Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.63685 * 2 1 4 4 C 1.55155 * 110.72163 * 123.33091 * 2 1 3 5 5 C 1.54686 * 101.67961 * 153.70435 * 4 2 1 6 6 N 1.47430 * 104.94083 * 323.28042 * 5 4 2 7 7 C 1.36938 * 125.64765 * 204.07586 * 6 5 4 8 8 H 1.07997 * 120.00036 * 209.71412 * 7 6 5 9 9 C 1.38810 * 120.00132 * 29.72168 * 7 6 5 10 10 N 1.31615 * 119.99982 * 196.46576 * 9 7 6 11 11 Si 1.86796 * 120.00068 * 16.45718 * 9 7 6 12 12 H 1.48505 * 109.47166 * 273.51626 * 11 9 7 13 13 H 1.48501 * 109.47536 * 33.51660 * 11 9 7 14 14 H 1.48498 * 109.47405 * 153.51709 * 11 9 7 15 15 C 1.47024 * 108.70157 * 23.80556 * 6 5 4 16 16 H 1.08995 * 109.88231 * 239.59966 * 15 6 5 17 17 C 1.50697 * 109.88013 * 118.58840 * 15 6 5 18 18 C 1.38268 * 119.98500 * 141.45352 * 17 15 6 19 19 C 1.38230 * 120.04928 * 179.97438 * 18 17 15 20 20 C 1.38218 * 120.02702 * 0.02562 * 19 18 17 21 21 C 1.38437 * 119.97240 * 359.97438 * 20 19 18 22 22 F 1.35104 * 120.02513 * 180.02562 * 21 20 19 23 23 C 1.38178 * 119.98829 * 321.18051 * 17 15 6 24 24 H 1.09002 * 109.46378 * 183.14439 * 1 2 3 25 25 H 1.09000 * 109.47374 * 303.14123 * 1 2 3 26 26 H 1.08999 * 109.46980 * 63.14708 * 1 2 3 27 27 H 1.09005 * 111.00086 * 271.94325 * 4 2 1 28 28 H 1.09002 * 111.00714 * 35.79469 * 4 2 1 29 29 H 1.08995 * 110.39492 * 204.36452 * 5 4 2 30 30 H 1.09001 * 110.23805 * 82.10866 * 5 4 2 31 31 H 0.96998 * 119.99959 * 180.02562 * 10 9 7 32 32 H 1.08003 * 119.97780 * 0.02562 * 18 17 15 33 33 H 1.07999 * 119.98368 * 180.02562 * 19 18 17 34 34 H 1.07992 * 120.01277 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.01176 * 0.02562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0790 -0.7974 1.2125 5 6 3.4600 -1.2550 0.6870 6 7 3.2447 -1.5493 -0.7415 7 6 4.0037 -2.3954 -1.5053 8 1 4.1120 -2.2158 -2.5647 9 6 4.6337 -3.4839 -0.9179 10 7 5.6062 -4.1029 -1.5529 11 14 4.1014 -4.0700 0.7740 12 1 4.8330 -3.3052 1.8157 13 1 2.6410 -3.8545 0.9358 14 1 4.4070 -5.5163 0.9156 15 6 2.0761 -0.7891 -1.2085 16 1 1.3142 -1.4730 -1.5825 17 6 2.4882 0.1650 -2.2998 18 6 1.6553 0.3774 -3.3829 19 6 2.0318 1.2527 -4.3843 20 6 3.2416 1.9162 -4.3043 21 6 4.0763 1.7043 -3.2204 22 9 5.2588 2.3527 -3.1408 23 6 3.6956 0.8315 -2.2148 24 1 -0.3632 -1.0262 0.0564 25 1 -0.3634 0.5618 0.8605 26 1 -0.3633 0.4642 -0.9168 27 1 2.1849 -0.1551 2.0868 28 1 1.4453 -1.6559 1.4348 29 1 3.7890 -2.1508 1.2135 30 1 4.1916 -0.4553 0.8033 31 1 6.0462 -4.8637 -1.1426 32 1 0.7096 -0.1403 -3.4461 33 1 1.3802 1.4181 -5.2296 34 1 3.5353 2.6003 -5.0866 35 1 4.3441 0.6684 -1.3668 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175146523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -12.851928 kcal Electronic energy + Delta-G solvation = -18548.008918 eV Core-core repulsion = 15653.281302 eV Total energy + Delta-G solvation = -2894.727616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.85912 -40.77819 -38.74567 -35.02238 -32.88392 -32.73490 -31.36900 -29.77352 -27.57195 -25.10425 -23.87927 -23.20044 -22.12975 -20.76639 -19.10768 -18.11577 -17.69175 -17.05623 -16.92788 -16.56155 -16.29806 -15.40804 -14.89282 -14.78992 -14.55716 -14.43470 -14.14097 -13.94807 -13.26125 -13.23548 -13.04800 -12.82574 -12.70204 -12.52834 -12.24389 -12.00714 -11.78098 -11.58962 -11.47275 -11.18046 -10.67292 -9.76958 -9.54162 -8.91916 -8.19229 -5.55833 0.29022 0.39855 1.26409 1.36449 1.48545 2.39161 2.70638 3.05392 3.28137 3.42547 3.76102 3.82406 3.97732 4.00491 4.09586 4.22836 4.41529 4.48857 4.58396 4.63418 4.67749 4.79973 4.91433 5.01782 5.03952 5.14764 5.19303 5.21565 5.31002 5.36331 5.45604 5.54499 5.75413 5.78889 6.06852 6.14653 6.78155 7.52230 8.13190 9.01608 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.009178 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.307381 B = 3049.942026 C = 3775.950615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 H 0.081 0.919 4 C -0.122 4.122 5 C 0.099 3.901 6 N -0.615 5.615 7 C -0.223 4.223 8 H 0.045 0.955 9 C -0.037 4.037 10 N -0.960 5.960 11 Si 0.963 3.037 12 H -0.277 1.277 13 H -0.257 1.257 14 H -0.314 1.314 15 C 0.189 3.811 16 H 0.055 0.945 17 C -0.060 4.060 18 C -0.130 4.130 19 C -0.086 4.086 20 C -0.163 4.163 21 C 0.065 3.935 22 F -0.157 7.157 23 C -0.143 4.143 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 12.370 0.762 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.103 4.103 3 H 0.099 0.901 4 C -0.160 4.160 5 C -0.025 4.025 6 N -0.339 5.339 7 C -0.352 4.352 8 H 0.063 0.937 9 C -0.231 4.231 10 N -0.607 5.607 11 Si 0.794 3.206 12 H -0.205 1.205 13 H -0.182 1.182 14 H -0.243 1.243 15 C 0.083 3.917 16 H 0.073 0.927 17 C -0.062 4.062 18 C -0.149 4.149 19 C -0.103 4.103 20 C -0.182 4.182 21 C 0.046 3.954 22 F -0.135 7.135 23 C -0.162 4.162 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.166 0.834 33 H 0.187 0.813 34 H 0.172 0.828 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.568 12.212 0.726 17.539 hybrid contribution 1.183 -0.734 0.602 1.517 sum -11.384 11.478 1.329 16.221 Atomic orbital electron populations 1.21712 0.91812 1.02318 1.03102 1.22163 0.97590 0.98281 0.92301 0.90103 1.22840 0.94653 1.00237 0.98262 1.22165 0.97600 0.97231 0.85519 1.44787 1.31306 1.50596 1.07258 1.18351 1.22350 1.02258 0.92242 0.93716 1.25908 0.97951 0.96928 1.02330 1.69934 1.24886 1.24357 1.41487 0.85620 0.79815 0.74800 0.80326 1.20492 1.18166 1.24318 1.20331 0.88517 0.90450 0.92435 0.92712 1.20589 0.93252 0.95119 0.97270 1.21408 1.00715 0.99411 0.93344 1.21340 0.95356 0.94562 0.99064 1.21350 0.95545 1.03664 0.97603 1.18067 0.82906 0.96403 0.97991 1.91424 1.45523 1.80004 1.96595 1.20882 0.98402 0.97640 0.99264 0.92676 0.90515 0.91369 0.88157 0.91061 0.95427 0.95441 0.92924 0.83362 0.81347 0.82803 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.14 71.98 0.66 -2.10 16 2 C -0.08 -2.41 3.06 -9.61 -0.03 -2.44 16 3 H 0.08 2.25 7.80 -2.39 -0.02 2.23 16 4 C -0.12 -3.74 6.52 31.91 0.21 -3.53 16 5 C 0.10 4.13 6.21 86.78 0.54 4.67 16 6 N -0.61 -28.98 2.05 -672.84 -1.38 -30.36 16 7 C -0.22 -12.93 10.10 84.03 0.85 -12.08 16 8 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 9 C -0.04 -2.19 5.46 84.86 0.46 -1.72 16 10 N -0.96 -62.00 13.97 21.65 0.30 -61.70 16 11 Si 0.96 47.89 24.73 68.60 1.70 49.58 16 12 H -0.28 -13.19 6.61 99.48 0.66 -12.53 16 13 H -0.26 -11.90 7.10 99.48 0.71 -11.19 16 14 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 15 C 0.19 7.00 2.91 44.59 0.13 7.13 16 16 H 0.06 2.05 7.71 -2.39 -0.02 2.03 16 17 C -0.06 -2.15 4.55 -19.87 -0.09 -2.24 16 18 C -0.13 -3.68 9.67 22.27 0.22 -3.46 16 19 C -0.09 -2.07 10.04 22.26 0.22 -1.84 16 20 C -0.16 -4.53 10.03 22.31 0.22 -4.30 16 21 C 0.07 2.33 7.30 22.38 0.16 2.49 16 22 F -0.16 -5.82 17.27 44.97 0.78 -5.05 16 23 C -0.14 -5.61 9.13 22.31 0.20 -5.41 16 24 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.07 2.17 8.02 -2.39 -0.02 2.15 16 29 H 0.03 1.27 2.31 -2.39 -0.01 1.26 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.15 3.37 8.05 -2.91 -0.02 3.35 16 33 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.10 4.66 7.69 -2.91 -0.02 4.63 16 Total: -1.00 -70.43 287.71 6.18 -64.25 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.03 Total: 8.10 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.76 Total: -24.83 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -1.08 Total: -92.06 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.78 Total: -5.05 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.70 Total: 49.58 kcal Total: -70.43 6.18 -64.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175146523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.402 kcal (2) G-P(sol) polarization free energy of solvation -70.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds