Wall clock time and date at job start Mon Mar 30 2020 07:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48503 * 109.46621 * 269.99826 * 3 2 1 5 5 H 1.48495 * 109.46862 * 29.99947 * 3 2 1 6 6 H 1.48497 * 109.46866 * 150.00300 * 3 2 1 7 7 C 1.37878 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00256 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47277 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47222 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47222 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47192 * 180.02562 * 12 11 10 14 14 C 1.42903 * 114.00038 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47064 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46818 * 179.97438 * 15 14 13 17 17 C 1.38227 * 119.61686 * 125.02645 * 16 15 14 18 18 C 1.38627 * 119.15663 * 179.70253 * 17 16 15 19 19 C 1.38669 * 118.42388 * 0.51169 * 18 17 16 20 20 C 1.38186 * 119.16143 * 359.50231 * 19 18 17 21 21 N 1.31856 * 119.61480 * 304.99563 * 16 15 14 22 22 H 0.97000 * 120.00274 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.47066 * 59.99515 * 9 7 2 24 24 H 1.08999 * 109.47125 * 300.00241 * 9 7 2 25 25 H 1.08997 * 109.46915 * 60.00079 * 10 9 7 26 26 H 1.08996 * 109.46924 * 300.00315 * 10 9 7 27 27 H 1.08997 * 109.47019 * 60.00256 * 11 10 9 28 28 H 1.08999 * 109.47244 * 300.00502 * 11 10 9 29 29 H 1.08997 * 109.46915 * 60.00192 * 12 11 10 30 30 H 1.08999 * 109.47421 * 300.00393 * 12 11 10 31 31 H 1.08994 * 109.47197 * 59.99326 * 14 13 12 32 32 H 1.09003 * 109.46715 * 299.99885 * 14 13 12 33 33 H 1.08998 * 109.47200 * 59.99966 * 15 14 13 34 34 H 1.08994 * 109.47201 * 299.99745 * 15 14 13 35 35 H 1.07998 * 120.41947 * 359.94797 * 17 16 15 36 36 H 1.08008 * 120.78691 * 180.26734 * 18 17 16 37 37 H 1.08002 * 120.42244 * 179.78749 * 19 18 17 38 38 H 1.07996 * 119.61757 * 180.25243 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6364 -0.0022 12 6 6.0617 -4.0788 -0.0028 13 8 7.4907 -4.0788 -0.0033 14 6 8.0720 -5.3842 -0.0044 15 6 9.5972 -5.2633 -0.0056 16 6 10.2102 -6.6401 -0.0061 17 6 11.1174 -6.9835 -0.9908 18 6 11.6801 -8.2504 -0.9786 19 6 11.2996 -9.1320 0.0218 20 6 10.3864 -8.7179 0.9728 21 7 9.8754 -7.5028 0.9332 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6802 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 3.6580 -3.1504 -0.8907 26 1 3.6587 -3.1501 0.8892 27 1 5.9157 -2.1222 0.8873 28 1 5.9143 -2.1228 -0.8926 29 1 5.6977 -4.5926 -0.8925 30 1 5.6991 -4.5928 0.8874 31 1 7.7500 -5.9246 -0.8945 32 1 7.7507 -5.9257 0.8854 33 1 9.9195 -4.7228 0.8844 34 1 9.9181 -4.7220 -0.8955 35 1 11.3874 -6.2726 -1.7577 36 1 12.3950 -8.5451 -1.7327 37 1 11.7151 -10.1282 0.0601 38 1 10.0880 -9.3971 1.7576 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196250183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:00 Heat of formation + Delta-G solvation = -59.261223 kcal Electronic energy + Delta-G solvation = -16594.414019 eV Core-core repulsion = 13821.134250 eV Total energy + Delta-G solvation = -2773.279769 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14361 -39.12398 -36.53056 -34.78329 -34.09783 -33.25574 -31.21349 -29.77545 -26.59662 -24.98770 -24.27998 -23.14247 -22.34355 -21.68526 -18.85783 -17.98156 -17.53478 -17.19660 -17.01938 -16.37656 -16.18838 -15.94207 -15.55586 -14.84149 -14.71233 -14.34934 -14.21385 -13.88721 -13.72232 -13.21393 -13.15801 -12.69406 -12.55482 -12.52227 -12.10855 -11.97595 -11.74573 -11.44532 -11.38369 -11.28163 -10.81532 -10.75909 -10.58547 -10.34565 -9.91117 -8.29227 -6.33430 0.15358 0.37076 1.36719 1.38761 1.51500 2.37222 2.55007 2.89600 3.05971 3.39112 3.84303 4.01436 4.05328 4.09291 4.13395 4.25170 4.25743 4.36152 4.43038 4.47435 4.54655 4.56675 4.71190 4.83414 4.86499 4.92153 5.00702 5.12495 5.13382 5.19046 5.26955 5.28704 5.54214 5.62612 5.67692 5.80706 6.23031 6.29549 6.74552 7.05384 7.31276 8.87585 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.066827 B = 0.002582 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.890157 B =10840.706929 C =11066.193712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.013 4.013 10 C -0.094 4.094 11 C -0.109 4.109 12 C 0.068 3.932 13 O -0.405 6.405 14 C 0.072 3.928 15 C -0.063 4.063 16 C 0.110 3.890 17 C -0.172 4.172 18 C -0.076 4.076 19 C -0.175 4.175 20 C 0.084 3.916 21 N -0.517 5.517 22 H 0.266 0.734 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.026 -17.349 -2.070 33.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.050 0.950 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.147 4.147 12 C -0.008 4.008 13 O -0.325 6.325 14 C -0.004 4.004 15 C -0.101 4.101 16 C -0.027 4.027 17 C -0.191 4.191 18 C -0.102 4.102 19 C -0.194 4.194 20 C -0.073 4.073 21 N -0.227 5.227 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.181 0.819 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 27.391 -16.828 -1.431 32.179 hybrid contribution -0.072 0.154 -0.477 0.507 sum 27.319 -16.674 -1.908 32.062 Atomic orbital electron populations 1.70075 1.08317 1.28185 1.52757 1.26082 0.95697 1.03734 0.94120 0.85602 0.79451 0.77978 0.79288 1.19018 1.20901 1.17021 1.21546 0.92277 0.93131 1.50320 0.95031 1.19545 0.93737 0.95158 0.96622 1.21250 0.93513 0.97373 1.00993 1.21478 0.94804 0.95497 1.02902 1.22503 0.79919 0.97741 1.00614 1.87794 1.20375 1.28709 1.95580 1.22351 0.93463 0.84171 1.00454 1.20367 0.92865 0.91988 1.04864 1.21176 0.94883 0.95171 0.91457 1.22276 0.98152 0.98808 0.99909 1.22034 0.97629 0.92576 0.97956 1.22517 0.98882 1.02386 0.95660 1.23201 0.93469 0.92129 0.98525 1.67440 1.26103 1.04377 1.24762 0.92493 0.96201 0.96180 0.92895 0.93064 0.91607 0.91286 0.92689 0.93064 0.93373 0.93235 0.89769 0.87997 0.82727 0.81794 0.81905 0.81081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 2 C 0.00 0.00 5.47 84.65 0.46 0.47 16 3 Si 0.95 45.39 27.47 68.60 1.88 47.27 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 7 C -0.53 -31.87 9.66 25.60 0.25 -31.62 16 8 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 9 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 10 C -0.09 -3.74 5.15 30.59 0.16 -3.58 16 11 C -0.11 -3.58 5.58 30.59 0.17 -3.41 16 12 C 0.07 1.97 5.94 71.98 0.43 2.40 16 13 O -0.40 -11.52 10.34 -148.98 -1.54 -13.06 16 14 C 0.07 1.71 5.80 71.98 0.42 2.13 16 15 C -0.06 -1.22 5.98 29.85 0.18 -1.05 16 16 C 0.11 2.09 6.18 42.55 0.26 2.35 16 17 C -0.17 -2.34 9.71 22.36 0.22 -2.12 16 18 C -0.08 -0.78 10.18 22.47 0.23 -0.55 16 19 C -0.17 -1.84 10.11 22.36 0.23 -1.61 16 20 C 0.08 1.27 11.18 84.67 0.95 2.22 16 21 N -0.52 -10.94 9.88 -183.88 -1.82 -12.76 16 22 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 23 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 24 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.25 7.95 -2.39 -0.02 1.23 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 1.62 7.87 -2.39 -0.02 1.60 16 35 H 0.16 1.39 7.95 -2.91 -0.02 1.37 16 36 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 37 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 38 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -71.94 321.53 3.84 -68.10 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.95 Total: 6.18 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 4.06 Total: -34.90 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.52 Total: -73.60 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.54 Total: -13.06 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Total: -71.94 3.84 -68.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196250183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.842 kcal (2) G-P(sol) polarization free energy of solvation -71.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds