Wall clock time and date at job start Mon Mar 30 2020 07:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47089 * 270.00366 * 3 2 1 5 5 H 1.48503 * 109.47019 * 30.00698 * 3 2 1 6 6 H 1.48499 * 109.46759 * 150.00317 * 3 2 1 7 7 C 1.37875 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47128 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.46889 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99778 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46728 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 16 16 C 1.38119 * 120.03688 * 265.00227 * 15 14 13 17 17 C 1.38267 * 120.07397 * 179.97438 * 16 15 14 18 18 C 1.38303 * 120.15294 * 0.04436 * 17 16 15 19 19 C 1.38088 * 120.07106 * 359.97438 * 18 17 16 20 20 C 1.38888 * 120.03801 * 84.72504 * 15 14 13 21 21 N 1.39677 * 120.07236 * 0.02562 * 20 15 14 22 22 H 0.97007 * 119.99648 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46851 * 60.00336 * 9 7 2 24 24 H 1.08999 * 109.47356 * 300.00276 * 9 7 2 25 25 H 1.08997 * 109.47213 * 59.99916 * 10 9 7 26 26 H 1.09008 * 109.46725 * 300.00032 * 10 9 7 27 27 H 1.08997 * 109.47286 * 59.99785 * 11 10 9 28 28 H 1.08997 * 109.46848 * 299.99883 * 11 10 9 29 29 H 1.09000 * 109.47187 * 300.00233 * 13 12 11 30 30 H 1.09001 * 109.46558 * 60.00281 * 13 12 11 31 31 H 1.09000 * 109.47486 * 300.00062 * 14 13 12 32 32 H 1.09001 * 109.47362 * 60.00784 * 14 13 12 33 33 H 1.08006 * 119.96741 * 359.97438 * 16 15 14 34 34 H 1.08002 * 119.92445 * 180.02562 * 17 16 15 35 35 H 1.07994 * 119.96913 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.03622 * 180.02562 * 19 18 17 37 37 H 0.97002 * 120.00365 * 0.02562 * 21 20 15 38 38 H 0.97000 * 120.00075 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4087 -6.0733 -0.0018 13 6 1.7941 -7.3634 -0.0018 14 6 2.8770 -8.4441 -0.0031 15 6 2.2289 -9.8047 -0.0038 16 6 2.0262 -10.4745 1.1869 17 6 1.4311 -11.7226 1.1872 18 6 1.0378 -12.3050 -0.0039 19 6 1.2379 -11.6410 -1.1980 20 6 1.8295 -10.3839 -1.2013 21 7 2.0283 -9.7070 -2.4068 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8537 -5.0446 -0.8913 28 1 0.8532 -5.0450 0.8886 29 1 1.1742 -7.4706 0.8883 30 1 1.1736 -7.4701 -0.8917 31 1 3.4965 -8.3368 -0.8935 32 1 3.4978 -8.3376 0.8865 33 1 2.3328 -10.0230 2.1189 34 1 1.2734 -12.2441 2.1198 35 1 0.5737 -13.2801 -0.0003 36 1 0.9301 -12.0961 -2.1278 37 1 2.4460 -8.8315 -2.4084 38 1 1.7493 -10.1127 -3.2426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229489147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:44 Heat of formation + Delta-G solvation = -49.537738 kcal Electronic energy + Delta-G solvation = -16971.316622 eV Core-core repulsion = 14198.458495 eV Total energy + Delta-G solvation = -2772.858127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80498 -37.67424 -34.78325 -34.05640 -33.08405 -31.42609 -29.34194 -28.17279 -26.43076 -23.55483 -22.78992 -22.45154 -20.95488 -20.05953 -17.37601 -17.17629 -16.59732 -16.01436 -15.77892 -15.36716 -14.42408 -14.35942 -14.24378 -13.99227 -13.74339 -13.22770 -13.09674 -12.32457 -12.27805 -11.72000 -11.54924 -11.30445 -11.11608 -11.06576 -10.86902 -10.76705 -10.55472 -10.35731 -9.81391 -9.44448 -9.19365 -9.10322 -8.90617 -8.35111 -7.66811 -6.00354 -4.02564 1.24709 1.48644 3.32784 3.38658 3.42694 3.65469 3.70409 4.04600 4.47324 4.70018 4.79315 4.98631 5.07714 5.30273 5.34551 5.35632 5.38678 5.46300 5.62184 5.72961 5.83541 5.86477 5.87279 6.06670 6.17639 6.21872 6.41069 6.51475 6.69909 6.73408 6.75308 7.10367 7.30987 7.56648 7.58688 7.67424 7.79423 7.99356 8.42349 9.04167 9.61457 11.11239 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.055233 B = 0.002881 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.818199 B = 9715.523066 C = 9809.911358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.063 3.937 12 O -0.393 6.393 13 C 0.066 3.934 14 C -0.070 4.070 15 C -0.159 4.159 16 C -0.066 4.066 17 C -0.180 4.180 18 C -0.075 4.075 19 C -0.201 4.201 20 C 0.223 3.777 21 N -0.877 5.877 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.401 0.599 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -23.961 -1.641 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.013 4.013 12 O -0.313 6.313 13 C -0.011 4.011 14 C -0.108 4.108 15 C -0.164 4.164 16 C -0.085 4.085 17 C -0.200 4.200 18 C -0.094 4.094 19 C -0.224 4.224 20 C 0.118 3.882 21 N -0.417 5.417 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.231 0.769 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.520 -23.815 -1.612 24.003 hybrid contribution 0.046 1.039 -0.371 1.104 sum 2.566 -22.776 -1.984 23.006 Atomic orbital electron populations 1.69969 1.06083 1.26638 1.50918 1.25033 0.94874 0.99324 0.95309 0.86562 0.79851 0.83305 0.78109 1.20646 1.21212 1.19816 1.21226 0.93136 0.90864 1.50521 0.92520 1.19051 0.93930 0.91092 0.97324 1.21652 0.99633 0.91755 1.01469 1.22775 0.92130 0.86902 0.99451 1.87865 1.34553 1.13476 1.95428 1.22394 0.95013 0.83611 1.00123 1.20277 0.97278 0.89490 1.03723 1.19242 1.07424 0.97599 0.92144 1.20874 0.96433 0.94297 0.96861 1.20883 1.04483 0.96746 0.97936 1.20860 0.97516 0.98946 0.92094 1.20556 1.07868 0.95217 0.98719 1.17647 0.93050 0.91280 0.86243 1.42647 1.70312 1.23077 1.05652 0.92982 0.96517 0.96475 0.92571 0.92641 0.93948 0.93842 0.93500 0.93871 0.90964 0.90090 0.86017 0.86466 0.86370 0.86411 0.76881 0.77536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.34 5.52 -26.73 -0.15 -2.49 16 11 C 0.06 1.18 5.94 37.16 0.22 1.40 16 12 O -0.39 -6.76 10.34 -35.23 -0.36 -7.12 16 13 C 0.07 0.89 5.92 37.16 0.22 1.11 16 14 C -0.07 -0.81 5.14 -27.88 -0.14 -0.95 16 15 C -0.16 -1.75 5.15 -104.42 -0.54 -2.29 16 16 C -0.07 -0.68 9.68 -39.61 -0.38 -1.06 16 17 C -0.18 -1.70 10.04 -39.55 -0.40 -2.10 16 18 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 19 C -0.20 -1.89 9.90 -39.38 -0.39 -2.28 16 20 C 0.22 2.30 6.73 -83.79 -0.56 1.74 16 21 N -0.88 -7.41 8.99 32.41 0.29 -7.12 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.80 6.83 -51.93 -0.35 0.44 16 32 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.40 3.44 6.94 -40.82 -0.28 3.15 16 38 H 0.40 2.50 8.84 -40.82 -0.36 2.14 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -31.52 321.17 -8.62 -40.14 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.03 Total: 0.20 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -3.07 Total: -21.32 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 1.03 Total: -33.60 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.36 Total: -7.12 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.52 -8.62 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229489147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.397 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds