Wall clock time and date at job start Mon Mar 30 2020 07:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47089 * 270.00366 * 3 2 1 5 5 H 1.48503 * 109.47019 * 30.00698 * 3 2 1 6 6 H 1.48499 * 109.46759 * 150.00317 * 3 2 1 7 7 C 1.37875 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47128 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.46889 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99778 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46728 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 16 16 C 1.38119 * 120.03688 * 265.00227 * 15 14 13 17 17 C 1.38267 * 120.07397 * 179.97438 * 16 15 14 18 18 C 1.38303 * 120.15294 * 0.04436 * 17 16 15 19 19 C 1.38088 * 120.07106 * 359.97438 * 18 17 16 20 20 C 1.38888 * 120.03801 * 84.72504 * 15 14 13 21 21 N 1.39677 * 120.07236 * 0.02562 * 20 15 14 22 22 H 0.97007 * 119.99648 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46851 * 60.00336 * 9 7 2 24 24 H 1.08999 * 109.47356 * 300.00276 * 9 7 2 25 25 H 1.08997 * 109.47213 * 59.99916 * 10 9 7 26 26 H 1.09008 * 109.46725 * 300.00032 * 10 9 7 27 27 H 1.08997 * 109.47286 * 59.99785 * 11 10 9 28 28 H 1.08997 * 109.46848 * 299.99883 * 11 10 9 29 29 H 1.09000 * 109.47187 * 300.00233 * 13 12 11 30 30 H 1.09001 * 109.46558 * 60.00281 * 13 12 11 31 31 H 1.09000 * 109.47486 * 300.00062 * 14 13 12 32 32 H 1.09001 * 109.47362 * 60.00784 * 14 13 12 33 33 H 1.08006 * 119.96741 * 359.97438 * 16 15 14 34 34 H 1.08002 * 119.92445 * 180.02562 * 17 16 15 35 35 H 1.07994 * 119.96913 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.03622 * 180.02562 * 19 18 17 37 37 H 0.97002 * 120.00365 * 0.02562 * 21 20 15 38 38 H 0.97000 * 120.00075 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4087 -6.0733 -0.0018 13 6 1.7941 -7.3634 -0.0018 14 6 2.8770 -8.4441 -0.0031 15 6 2.2289 -9.8047 -0.0038 16 6 2.0262 -10.4745 1.1869 17 6 1.4311 -11.7226 1.1872 18 6 1.0378 -12.3050 -0.0039 19 6 1.2379 -11.6410 -1.1980 20 6 1.8295 -10.3839 -1.2013 21 7 2.0283 -9.7070 -2.4068 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8537 -5.0446 -0.8913 28 1 0.8532 -5.0450 0.8886 29 1 1.1742 -7.4706 0.8883 30 1 1.1736 -7.4701 -0.8917 31 1 3.4965 -8.3368 -0.8935 32 1 3.4978 -8.3376 0.8865 33 1 2.3328 -10.0230 2.1189 34 1 1.2734 -12.2441 2.1198 35 1 0.5737 -13.2801 -0.0003 36 1 0.9301 -12.0961 -2.1278 37 1 2.4460 -8.8315 -2.4084 38 1 1.7493 -10.1127 -3.2426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229489147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:44 Heat of formation + Delta-G solvation = -68.203048 kcal Electronic energy + Delta-G solvation = -16972.126010 eV Core-core repulsion = 14198.458495 eV Total energy + Delta-G solvation = -2773.667515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56159 -38.99335 -36.00998 -35.41885 -34.27962 -33.22593 -30.20718 -29.16586 -28.16416 -24.97212 -24.26323 -23.19220 -22.16195 -21.51847 -18.60282 -18.10895 -17.89611 -17.44715 -17.08303 -16.49228 -16.15241 -15.57981 -15.40888 -14.86308 -14.68696 -14.37511 -14.10948 -13.86121 -13.72744 -13.52125 -12.87058 -12.69705 -12.52298 -12.39691 -12.07288 -11.97914 -11.80315 -11.64426 -11.49804 -11.48010 -11.20306 -10.57546 -10.55227 -9.66281 -8.37667 -8.22046 -6.33257 0.50577 0.76129 1.40356 1.41925 1.53354 2.39453 2.66684 3.02167 3.07927 3.11353 3.89852 4.00742 4.13013 4.16413 4.19049 4.35730 4.43011 4.44500 4.57924 4.59818 4.67558 4.79317 4.88421 4.93439 4.97491 5.12442 5.15989 5.23874 5.45732 5.48398 5.68420 5.69095 5.78802 5.81454 6.06843 6.16900 6.30233 6.61249 6.82561 6.96207 7.36032 8.90099 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.055233 B = 0.002881 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.818199 B = 9715.523066 C = 9809.911358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.073 3.927 12 O -0.404 6.404 13 C 0.064 3.936 14 C -0.061 4.061 15 C -0.179 4.179 16 C -0.078 4.078 17 C -0.190 4.190 18 C -0.078 4.078 19 C -0.210 4.210 20 C 0.212 3.788 21 N -0.873 5.873 22 H 0.265 0.735 23 H -0.003 1.003 24 H -0.004 1.004 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.400 0.600 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -24.721 -1.845 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.134 4.134 11 C -0.003 4.003 12 O -0.324 6.324 13 C -0.012 4.012 14 C -0.098 4.098 15 C -0.184 4.184 16 C -0.096 4.096 17 C -0.210 4.210 18 C -0.096 4.096 19 C -0.232 4.232 20 C 0.106 3.894 21 N -0.413 5.413 22 H 0.074 0.926 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.230 0.770 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.138 -24.599 -1.831 24.865 hybrid contribution -0.182 1.179 -0.311 1.233 sum 2.956 -23.419 -2.142 23.702 Atomic orbital electron populations 1.70093 1.07789 1.27907 1.51529 1.25996 0.95826 1.03430 0.94583 0.85408 0.78624 0.78206 0.78584 1.19631 1.20570 1.18797 1.21658 0.93605 0.92236 1.50825 0.92178 1.18930 0.94248 0.92563 0.95266 1.21396 0.98592 0.92025 1.01365 1.22476 0.91711 0.86174 0.99921 1.87825 1.34634 1.14406 1.95523 1.22575 0.95879 0.82346 1.00398 1.20177 0.96607 0.89229 1.03836 1.19259 1.08746 0.97462 0.92890 1.21080 0.96655 0.94885 0.97013 1.21158 1.04216 0.96570 0.99014 1.21212 0.96832 0.99820 0.91768 1.20848 1.07622 0.94985 0.99782 1.17843 0.93195 0.91849 0.86521 1.42640 1.70026 1.22955 1.05713 0.92644 0.98492 0.98568 0.92717 0.92572 0.93386 0.93552 0.93412 0.93332 0.90647 0.90210 0.85380 0.84788 0.84055 0.84690 0.77019 0.76396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.10 -4.21 5.52 30.59 0.17 -4.04 16 11 C 0.07 2.71 5.94 71.98 0.43 3.14 16 12 O -0.40 -13.57 10.34 -148.98 -1.54 -15.11 16 13 C 0.06 1.70 5.92 71.98 0.43 2.13 16 14 C -0.06 -1.36 5.14 29.85 0.15 -1.21 16 15 C -0.18 -3.78 5.15 -19.73 -0.10 -3.88 16 16 C -0.08 -1.53 9.68 22.25 0.22 -1.31 16 17 C -0.19 -3.27 10.04 22.29 0.22 -3.04 16 18 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 19 C -0.21 -3.58 9.90 22.40 0.22 -3.36 16 20 C 0.21 4.11 6.73 38.21 0.26 4.37 16 21 N -0.87 -13.73 8.99 -51.37 -0.46 -14.19 16 22 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 23 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 24 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.60 6.83 -2.39 -0.02 1.59 16 32 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 33 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.40 6.47 6.94 -92.71 -0.64 5.83 16 38 H 0.41 4.57 8.84 -92.71 -0.82 3.75 16 Total: -1.00 -66.40 321.17 2.95 -63.45 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -0.42 Total: 13.74 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.06 Total: -37.67 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.18 Total: -71.08 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -1.54 Total: -15.11 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.40 2.95 -63.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229489147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.754 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds