Wall clock time and date at job start Mon Mar 30 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47026 * 2 1 4 4 H 1.09003 * 109.46712 * 57.36833 * 3 2 1 5 5 C 1.50703 * 109.47458 * 177.35967 * 3 2 1 6 6 H 1.08000 * 119.99848 * 123.11745 * 5 3 2 7 7 C 1.37883 * 119.99980 * 303.12694 * 5 3 2 8 8 N 1.31520 * 119.99828 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99762 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47357 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47379 * 120.00263 * 9 7 5 12 12 H 1.48507 * 109.46869 * 239.99964 * 9 7 5 13 13 N 1.46893 * 109.47649 * 297.36291 * 3 2 1 14 14 C 1.47907 * 111.00011 * 301.12837 * 13 3 2 15 15 C 1.54593 * 102.62733 * 265.49456 * 14 13 3 16 16 C 1.51588 * 102.83700 * 334.45475 * 15 14 13 17 17 C 1.37932 * 131.53101 * 196.30045 * 16 15 14 18 18 C 1.38261 * 120.11122 * 179.31395 * 17 16 15 19 19 C 1.38533 * 119.86224 * 359.97438 * 18 17 16 20 20 F 1.35098 * 119.89973 * 180.12121 * 19 18 17 21 21 C 1.38129 * 120.20610 * 0.14436 * 19 18 17 22 22 C 1.38988 * 107.94242 * 15.94249 * 16 15 14 23 23 H 1.08995 * 109.47398 * 55.50549 * 1 2 3 24 24 H 1.08995 * 109.47053 * 295.50445 * 1 2 3 25 25 H 1.09001 * 109.47058 * 175.50752 * 1 2 3 26 26 H 1.08997 * 109.47285 * 120.00840 * 2 1 3 27 27 H 1.09005 * 109.47192 * 240.00578 * 2 1 3 28 28 H 0.96999 * 119.99577 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.77502 * 23.78463 * 14 13 3 30 30 H 1.09002 * 110.77685 * 147.21083 * 14 13 3 31 31 H 1.08995 * 110.74044 * 216.12156 * 15 14 13 32 32 H 1.08997 * 110.74043 * 92.79529 * 15 14 13 33 33 H 1.07997 * 119.94864 * 359.31984 * 17 16 15 34 34 H 1.08005 * 120.07423 * 180.02562 * 18 17 16 35 35 H 1.08001 * 119.91280 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6385 1.9697 0.8655 5 6 3.5456 1.4431 0.0655 6 1 4.1192 1.9422 -0.7015 7 6 4.1907 0.8062 1.1044 8 7 3.4921 0.1987 2.0385 9 14 6.0569 0.8064 1.1851 10 1 6.6026 1.5527 0.0230 11 1 6.4980 1.4586 2.4442 12 1 6.5539 -0.5926 1.1519 13 7 1.6031 2.1164 -1.2299 14 6 2.1077 1.4116 -2.4284 15 6 3.4112 2.1789 -2.7478 16 6 3.1539 3.5457 -2.1448 17 6 3.7801 4.7604 -2.3319 18 6 3.3339 5.8818 -1.6575 19 6 2.2557 5.7836 -0.7932 20 9 1.8175 6.8794 -0.1357 21 6 1.6274 4.5685 -0.6012 22 6 2.0755 3.4339 -1.2752 23 1 -0.3634 0.5820 -0.8469 24 1 -0.3633 0.4425 0.9275 25 1 -0.3633 -1.0245 -0.0805 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 3.9460 -0.2490 2.7695 29 1 2.3195 0.3667 -2.2019 30 1 1.3989 1.4938 -3.2524 31 1 3.5608 2.2542 -3.8248 32 1 4.2670 1.7013 -2.2706 33 1 4.6202 4.8356 -3.0063 34 1 3.8244 6.8328 -1.8047 35 1 0.7875 4.4972 0.0740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233866807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:41 Heat of formation + Delta-G solvation = -1.900681 kcal Electronic energy + Delta-G solvation = -18744.557030 eV Core-core repulsion = 15850.304296 eV Total energy + Delta-G solvation = -2894.252734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.44899 -40.27242 -36.46199 -33.54213 -31.78528 -31.03941 -28.56257 -27.91240 -26.59470 -23.20325 -22.55043 -21.34745 -20.78612 -18.96735 -16.88231 -16.82287 -16.02970 -15.31699 -15.17973 -15.05395 -14.32163 -13.69533 -13.45658 -13.24872 -12.98716 -12.76184 -12.30189 -11.89480 -11.56427 -11.47001 -11.24000 -11.12151 -11.02563 -10.96127 -10.58496 -10.42261 -10.07257 -9.81793 -9.46627 -9.24991 -8.52965 -8.44908 -8.10702 -7.13379 -6.07334 -4.20819 1.71412 1.81822 3.21019 3.30405 3.32773 4.07153 4.33447 4.41788 4.90895 5.18103 5.20345 5.39974 5.48698 5.61007 5.79778 5.85848 6.06167 6.17651 6.30692 6.34140 6.42845 6.49843 6.57506 6.60013 6.69152 6.77485 6.94102 7.05073 7.05705 7.13233 7.32126 7.56093 7.64893 7.79003 8.00206 8.19139 8.29019 8.86464 9.47099 10.91801 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.009682 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.169759 B = 2891.230886 C = 3396.462886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.218 3.782 4 H 0.041 0.959 5 C -0.554 4.554 6 H 0.076 0.924 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.495 5.495 14 C 0.054 3.946 15 C -0.105 4.105 16 C -0.142 4.142 17 C -0.069 4.069 18 C -0.187 4.187 19 C 0.107 3.893 20 F -0.148 7.148 21 C -0.160 4.160 22 C 0.171 3.829 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.028 0.972 26 H 0.105 0.895 27 H 0.038 0.962 28 H 0.261 0.739 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 4.374 -7.635 8.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C 0.115 3.885 4 H 0.059 0.941 5 C -0.592 4.592 6 H 0.094 0.906 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.212 5.212 14 C -0.073 4.073 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.087 4.087 18 C -0.206 4.206 19 C 0.088 3.912 20 F -0.126 7.126 21 C -0.181 4.181 22 C 0.073 3.927 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.123 0.877 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.856 4.208 -7.390 8.704 hybrid contribution 1.810 0.215 0.415 1.869 sum -0.046 4.423 -6.975 8.259 Atomic orbital electron populations 1.21756 0.98745 0.98814 1.00705 1.21800 0.92332 0.98602 1.02970 1.19480 0.93555 0.90885 0.84559 0.94084 1.22184 0.92080 1.34785 1.10189 0.90592 1.24898 0.98103 0.94890 0.95359 1.69845 1.34956 1.35168 1.12329 0.86606 0.85964 0.77717 0.78206 1.19739 1.20950 1.20949 1.60588 1.55932 0.98927 1.05725 1.23027 0.93002 0.99540 0.91711 1.21865 1.01196 0.91861 0.99316 1.21098 0.96247 0.95289 1.01856 1.20069 0.98971 0.90780 0.98911 1.20739 0.99031 0.99737 1.01105 1.17226 0.96049 0.82687 0.95281 1.91440 1.89164 1.52375 1.79656 1.20207 1.03283 0.90086 1.04495 1.19240 0.90147 0.91028 0.92332 0.93285 0.94144 0.95238 0.87742 0.94359 0.92842 0.88807 0.91552 0.91628 0.88344 0.86128 0.85558 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.84 37.16 0.37 -2.41 16 2 C -0.12 -2.66 5.00 -26.73 -0.13 -2.79 16 3 C 0.22 5.15 1.87 -68.87 -0.13 5.02 16 4 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 5 C -0.55 -14.01 7.17 -34.44 -0.25 -14.26 16 6 H 0.08 1.89 3.57 -52.49 -0.19 1.71 16 7 C 0.07 1.84 5.29 -17.81 -0.09 1.74 16 8 N -0.88 -23.99 11.08 55.43 0.61 -23.37 16 9 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.50 -10.26 4.40 -162.82 -0.72 -10.98 16 14 C 0.05 0.98 6.42 -2.43 -0.02 0.97 16 15 C -0.10 -1.83 6.15 -26.61 -0.16 -1.99 16 16 C -0.14 -2.66 5.29 -104.02 -0.55 -3.21 16 17 C -0.07 -1.14 10.03 -39.68 -0.40 -1.54 16 18 C -0.19 -3.06 10.04 -39.46 -0.40 -3.46 16 19 C 0.11 1.94 7.28 -39.51 -0.29 1.65 16 20 F -0.15 -2.59 17.26 2.25 0.04 -2.55 16 21 C -0.16 -3.13 10.05 -39.20 -0.39 -3.52 16 22 C 0.17 3.49 5.02 -83.41 -0.42 3.07 16 23 H 0.05 0.92 7.55 -51.93 -0.39 0.53 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.10 2.63 5.75 -51.93 -0.30 2.34 16 27 H 0.04 0.82 5.88 -51.93 -0.31 0.52 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.09 1.75 5.47 -51.93 -0.28 1.46 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.89 6.13 -51.93 -0.32 1.57 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -26.64 280.58 -8.02 -34.66 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.30 Total: 3.17 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -2.86 Total: -20.72 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.10 Total: -34.35 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.64 -8.02 -34.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233866807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.762 kcal (2) G-P(sol) polarization free energy of solvation -26.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds