Wall clock time and date at job start Mon Mar 30 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47026 * 2 1 4 4 H 1.09003 * 109.46712 * 57.36833 * 3 2 1 5 5 C 1.50703 * 109.47458 * 177.35967 * 3 2 1 6 6 H 1.08000 * 119.99848 * 123.11745 * 5 3 2 7 7 C 1.37883 * 119.99980 * 303.12694 * 5 3 2 8 8 N 1.31520 * 119.99828 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99762 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47357 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47379 * 120.00263 * 9 7 5 12 12 H 1.48507 * 109.46869 * 239.99964 * 9 7 5 13 13 N 1.46893 * 109.47649 * 297.36291 * 3 2 1 14 14 C 1.47907 * 111.00011 * 301.12837 * 13 3 2 15 15 C 1.54593 * 102.62733 * 265.49456 * 14 13 3 16 16 C 1.51588 * 102.83700 * 334.45475 * 15 14 13 17 17 C 1.37932 * 131.53101 * 196.30045 * 16 15 14 18 18 C 1.38261 * 120.11122 * 179.31395 * 17 16 15 19 19 C 1.38533 * 119.86224 * 359.97438 * 18 17 16 20 20 F 1.35098 * 119.89973 * 180.12121 * 19 18 17 21 21 C 1.38129 * 120.20610 * 0.14436 * 19 18 17 22 22 C 1.38988 * 107.94242 * 15.94249 * 16 15 14 23 23 H 1.08995 * 109.47398 * 55.50549 * 1 2 3 24 24 H 1.08995 * 109.47053 * 295.50445 * 1 2 3 25 25 H 1.09001 * 109.47058 * 175.50752 * 1 2 3 26 26 H 1.08997 * 109.47285 * 120.00840 * 2 1 3 27 27 H 1.09005 * 109.47192 * 240.00578 * 2 1 3 28 28 H 0.96999 * 119.99577 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.77502 * 23.78463 * 14 13 3 30 30 H 1.09002 * 110.77685 * 147.21083 * 14 13 3 31 31 H 1.08995 * 110.74044 * 216.12156 * 15 14 13 32 32 H 1.08997 * 110.74043 * 92.79529 * 15 14 13 33 33 H 1.07997 * 119.94864 * 359.31984 * 17 16 15 34 34 H 1.08005 * 120.07423 * 180.02562 * 18 17 16 35 35 H 1.08001 * 119.91280 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6385 1.9697 0.8655 5 6 3.5456 1.4431 0.0655 6 1 4.1192 1.9422 -0.7015 7 6 4.1907 0.8062 1.1044 8 7 3.4921 0.1987 2.0385 9 14 6.0569 0.8064 1.1851 10 1 6.6026 1.5527 0.0230 11 1 6.4980 1.4586 2.4442 12 1 6.5539 -0.5926 1.1519 13 7 1.6031 2.1164 -1.2299 14 6 2.1077 1.4116 -2.4284 15 6 3.4112 2.1789 -2.7478 16 6 3.1539 3.5457 -2.1448 17 6 3.7801 4.7604 -2.3319 18 6 3.3339 5.8818 -1.6575 19 6 2.2557 5.7836 -0.7932 20 9 1.8175 6.8794 -0.1357 21 6 1.6274 4.5685 -0.6012 22 6 2.0755 3.4339 -1.2752 23 1 -0.3634 0.5820 -0.8469 24 1 -0.3633 0.4425 0.9275 25 1 -0.3633 -1.0245 -0.0805 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 3.9460 -0.2490 2.7695 29 1 2.3195 0.3667 -2.2019 30 1 1.3989 1.4938 -3.2524 31 1 3.5608 2.2542 -3.8248 32 1 4.2670 1.7013 -2.2706 33 1 4.6202 4.8356 -3.0063 34 1 3.8244 6.8328 -1.8047 35 1 0.7875 4.4972 0.0740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233866807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:41 Heat of formation + Delta-G solvation = -15.334735 kcal Electronic energy + Delta-G solvation = -18745.139574 eV Core-core repulsion = 15850.304296 eV Total energy + Delta-G solvation = -2894.835278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.85011 -41.76271 -37.98457 -35.26637 -33.57026 -32.52962 -30.07963 -29.34074 -28.41101 -24.93349 -24.04011 -22.89261 -22.19771 -20.65014 -18.68375 -18.35628 -17.54687 -16.87847 -16.58159 -16.50175 -16.14887 -15.22690 -14.99545 -14.75006 -14.53273 -14.32617 -13.87763 -13.43723 -13.15040 -12.99472 -12.97786 -12.81401 -12.69328 -12.53550 -12.16745 -12.00516 -11.76331 -11.56071 -11.19144 -10.92287 -10.43995 -10.08960 -9.56499 -8.70959 -8.01428 -6.23555 0.29257 0.40424 1.36538 1.40919 1.49017 2.40453 2.64495 2.97274 3.18062 3.53606 3.79692 4.03973 4.10396 4.26957 4.41573 4.45025 4.54385 4.68818 4.70985 4.87153 4.95170 4.96928 5.12682 5.15526 5.24298 5.30898 5.32342 5.40751 5.49837 5.60185 5.68998 5.75923 5.97105 6.05060 6.11358 6.41314 6.58073 6.93132 7.46857 8.93110 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.009682 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.169759 B = 2891.230886 C = 3396.462886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 C 0.227 3.773 4 H -0.005 1.005 5 C -0.555 4.555 6 H 0.082 0.918 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.942 3.058 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.280 1.280 13 N -0.501 5.501 14 C 0.052 3.948 15 C -0.099 4.099 16 C -0.151 4.151 17 C -0.065 4.065 18 C -0.173 4.173 19 C 0.096 3.904 20 F -0.147 7.147 21 C -0.179 4.179 22 C 0.137 3.863 23 H 0.056 0.944 24 H 0.028 0.972 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.259 0.741 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 5.214 -9.799 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C 0.123 3.877 4 H 0.013 0.987 5 C -0.593 4.593 6 H 0.099 0.901 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.769 3.231 10 H -0.188 1.188 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.218 5.218 14 C -0.074 4.074 15 C -0.136 4.136 16 C -0.154 4.154 17 C -0.083 4.083 18 C -0.192 4.192 19 C 0.077 3.923 20 F -0.126 7.126 21 C -0.200 4.200 22 C 0.039 3.961 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.640 5.061 -9.577 10.851 hybrid contribution 1.404 0.048 1.067 1.764 sum 0.763 5.110 -8.510 9.955 Atomic orbital electron populations 1.21628 0.96573 1.00243 1.00441 1.21632 0.94256 0.97521 1.01759 1.19161 0.92628 0.91175 0.84728 0.98693 1.22507 0.93158 1.33779 1.09880 0.90065 1.25596 1.01684 0.95087 0.95404 1.69991 1.36213 1.36198 1.12903 0.85745 0.81770 0.77736 0.77897 1.18808 1.21672 1.20561 1.60484 1.56596 0.99363 1.05321 1.23137 0.94197 0.98834 0.91253 1.21805 0.99742 0.90734 1.01338 1.21397 0.95825 0.96675 1.01511 1.20513 0.99320 0.89714 0.98773 1.21165 0.97618 1.01272 0.99190 1.17394 0.96753 0.82202 0.95990 1.91439 1.89279 1.52098 1.79764 1.20345 1.03701 0.91107 1.04879 1.19437 0.91832 0.90797 0.94000 0.92514 0.95231 0.93033 0.90772 0.93599 0.93120 0.89683 0.89069 0.87935 0.90224 0.82409 0.82113 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.84 71.98 0.71 -4.40 16 2 C -0.11 -5.16 5.00 30.59 0.15 -5.01 16 3 C 0.23 11.01 1.87 44.17 0.08 11.09 16 4 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 5 C -0.55 -28.32 7.17 25.60 0.18 -28.14 16 6 H 0.08 4.00 3.57 -2.91 -0.01 3.99 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -50.97 11.08 21.45 0.24 -50.73 16 9 Si 0.94 42.28 29.54 68.60 2.03 44.30 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.50 -20.76 4.40 -669.03 -2.94 -23.70 16 14 C 0.05 1.81 6.42 86.65 0.56 2.37 16 15 C -0.10 -3.19 6.15 30.67 0.19 -3.00 16 16 C -0.15 -5.33 5.29 -19.47 -0.10 -5.43 16 17 C -0.06 -1.91 10.03 22.20 0.22 -1.69 16 18 C -0.17 -5.11 10.04 22.35 0.22 -4.88 16 19 C 0.10 3.37 7.28 22.31 0.16 3.53 16 20 F -0.15 -5.01 17.26 44.97 0.78 -4.24 16 21 C -0.18 -7.10 10.05 22.52 0.23 -6.87 16 22 C 0.14 5.54 5.02 38.28 0.19 5.73 16 23 H 0.06 2.10 7.55 -2.39 -0.02 2.08 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 3.87 5.75 -2.39 -0.01 3.85 16 27 H 0.05 1.98 5.88 -2.38 -0.01 1.96 16 28 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.08 3.07 5.47 -2.39 -0.01 3.06 16 30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.08 2.90 6.13 -2.39 -0.01 2.89 16 33 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -58.21 280.58 4.44 -53.77 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.10 Total: 15.69 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.24 Total: -35.10 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -2.71 Total: -74.43 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.78 Total: -4.24 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -58.21 4.44 -53.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233866807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.433 kcal (2) G-P(sol) polarization free energy of solvation -58.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds