Wall clock time and date at job start Mon Mar 30 2020 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47373 * 2 1 4 4 H 1.08993 * 109.47293 * 301.81707 * 3 2 1 5 5 C 1.50699 * 109.47123 * 181.81412 * 3 2 1 6 6 H 1.08003 * 119.99845 * 241.96344 * 5 3 2 7 7 C 1.37876 * 120.00137 * 61.96012 * 5 3 2 8 8 N 1.31517 * 119.99649 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00419 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46774 * 90.00241 * 9 7 5 11 11 H 1.48489 * 109.47527 * 210.00338 * 9 7 5 12 12 H 1.48501 * 109.47130 * 330.00699 * 9 7 5 13 13 N 1.46899 * 109.46897 * 61.81821 * 3 2 1 14 14 C 1.47903 * 111.00510 * 57.25113 * 13 3 2 15 15 C 1.54600 * 102.62755 * 94.57007 * 14 13 3 16 16 C 1.51575 * 102.82838 * 25.57242 * 15 14 13 17 17 C 1.37942 * 131.52716 * 163.79429 * 16 15 14 18 18 C 1.38263 * 120.10976 * 180.15505 * 17 16 15 19 19 C 1.38533 * 119.85781 * 0.46632 * 18 17 16 20 20 F 1.35099 * 119.89734 * 179.65638 * 19 18 17 21 21 C 1.38130 * 120.21090 * 359.38722 * 19 18 17 22 22 C 1.38984 * 107.94613 * 343.95272 * 16 15 14 23 23 H 1.09000 * 109.47003 * 294.97901 * 1 2 3 24 24 H 1.08994 * 109.47189 * 54.97903 * 1 2 3 25 25 H 1.08992 * 109.47516 * 174.98105 * 1 2 3 26 26 H 1.08996 * 109.46980 * 239.99735 * 2 1 3 27 27 H 1.09006 * 109.47052 * 120.00186 * 2 1 3 28 28 H 0.96998 * 119.99671 * 179.97438 * 8 7 5 29 29 H 1.08998 * 110.78101 * 212.85377 * 14 13 3 30 30 H 1.09003 * 110.77548 * 336.28777 * 14 13 3 31 31 H 1.09009 * 110.73703 * 143.90736 * 15 14 13 32 32 H 1.09000 * 110.74128 * 267.05269 * 15 14 13 33 33 H 1.07997 * 119.94772 * 0.38782 * 17 16 15 34 34 H 1.08002 * 120.07562 * 180.23905 * 18 17 16 35 35 H 1.07994 * 119.91054 * 180.34159 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6504 1.9656 -0.8732 5 6 3.5464 1.4426 -0.0450 6 1 4.1108 1.8736 0.7687 7 6 4.2039 0.8926 -1.1248 8 7 3.5164 0.3682 -2.1158 9 14 6.0710 0.8934 -1.1810 10 1 6.5857 -0.3489 -0.5509 11 1 6.5238 0.9560 -2.5938 12 1 6.5879 2.0736 -0.4427 13 7 1.5866 2.1221 1.2208 14 6 2.0424 1.4014 2.4293 15 6 3.3538 2.1376 2.7873 16 6 3.1435 3.5123 2.1844 17 6 3.7926 4.7115 2.3929 18 6 3.3968 5.8433 1.7044 19 6 2.3401 5.7730 0.8113 20 9 1.9482 6.8800 0.1434 21 6 1.6894 4.5735 0.5974 22 6 2.0882 3.4280 1.2839 23 1 -0.3633 0.4340 0.9315 24 1 -0.3633 0.5897 -0.8415 25 1 -0.3634 -1.0236 -0.0899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.9790 -0.0185 -2.8757 29 1 1.3135 1.4964 3.2341 30 1 2.2367 0.3528 2.2038 31 1 3.4759 2.2048 3.8685 32 1 4.2115 1.6411 2.3336 33 1 4.6138 4.7655 3.0922 34 1 3.9079 6.7810 1.8652 35 1 0.8698 4.5231 -0.1040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234031760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:45 Heat of formation + Delta-G solvation = -2.683414 kcal Electronic energy + Delta-G solvation = -18751.533529 eV Core-core repulsion = 15857.246853 eV Total energy + Delta-G solvation = -2894.286676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.43567 -40.27036 -36.45754 -33.50814 -31.80453 -31.06772 -28.55495 -27.91592 -26.59175 -23.20529 -22.54633 -21.36230 -20.78004 -18.97937 -16.86780 -16.83695 -16.03644 -15.30428 -15.16952 -15.04486 -14.31551 -13.68884 -13.46447 -13.25687 -12.98665 -12.73760 -12.34710 -11.89830 -11.54674 -11.46814 -11.25979 -11.11766 -11.03159 -10.95602 -10.58576 -10.43832 -10.04620 -9.85862 -9.50417 -9.25459 -8.52178 -8.45502 -8.09866 -7.12510 -6.08268 -4.19875 1.72672 1.83370 3.22051 3.30495 3.33498 4.08020 4.34554 4.42870 4.91777 5.19701 5.19974 5.41144 5.49029 5.61049 5.78981 5.86034 6.06453 6.15676 6.28175 6.31905 6.41065 6.48466 6.54343 6.60718 6.69837 6.76116 6.92295 7.02541 7.05129 7.11517 7.31804 7.54305 7.62860 7.80326 7.96401 8.17400 8.26023 8.87476 9.47951 10.93393 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017445 B = 0.009886 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.672524 B = 2831.706324 C = 3356.097622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.218 3.782 4 H 0.045 0.955 5 C -0.556 4.556 6 H 0.076 0.924 7 C 0.071 3.929 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.496 5.496 14 C 0.052 3.948 15 C -0.104 4.104 16 C -0.142 4.142 17 C -0.068 4.068 18 C -0.187 4.187 19 C 0.107 3.893 20 F -0.148 7.148 21 C -0.159 4.159 22 C 0.173 3.827 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.029 0.971 26 H 0.094 0.906 27 H 0.040 0.960 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 4.055 7.850 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.116 3.884 4 H 0.063 0.937 5 C -0.594 4.594 6 H 0.093 0.907 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.212 5.212 14 C -0.075 4.075 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.087 4.087 18 C -0.206 4.206 19 C 0.088 3.912 20 F -0.126 7.126 21 C -0.180 4.180 22 C 0.075 3.925 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.011 3.921 7.573 8.762 hybrid contribution 1.849 0.192 -0.390 1.899 sum -0.162 4.113 7.183 8.279 Atomic orbital electron populations 1.21730 0.98542 0.98781 1.00751 1.21737 0.92492 0.98700 1.02339 1.19489 0.93429 0.90598 0.84927 0.93734 1.22134 0.91982 1.39274 1.06023 0.90658 1.24895 0.98066 0.94859 0.95360 1.69887 1.35211 1.38741 1.08460 0.86684 0.86085 0.78447 0.77464 1.20602 1.21139 1.19823 1.60589 1.55921 0.99141 1.05562 1.23054 0.93323 0.99534 0.91557 1.21850 1.01123 0.91945 0.99288 1.21070 0.96404 0.95309 1.01706 1.20065 0.98913 0.90840 0.98904 1.20735 0.99485 0.99733 1.00653 1.17227 0.96593 0.82513 0.94908 1.91439 1.90512 1.51446 1.79248 1.20200 1.03417 0.90189 1.04166 1.19208 0.90039 0.91015 0.92271 0.93538 0.93917 0.95202 0.88768 0.94160 0.92799 0.91506 0.88808 0.91619 0.88456 0.86150 0.85574 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.70 37.16 0.36 -2.34 16 2 C -0.11 -2.53 5.00 -26.73 -0.13 -2.67 16 3 C 0.22 5.15 1.82 -68.87 -0.13 5.02 16 4 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 5 C -0.56 -14.07 7.19 -34.44 -0.25 -14.32 16 6 H 0.08 1.87 3.51 -52.48 -0.18 1.69 16 7 C 0.07 1.87 5.31 -17.82 -0.09 1.78 16 8 N -0.89 -24.17 11.45 55.43 0.63 -23.54 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.50 -10.25 4.55 -162.82 -0.74 -10.99 16 14 C 0.05 0.94 6.43 -2.43 -0.02 0.93 16 15 C -0.10 -1.81 6.14 -26.61 -0.16 -1.97 16 16 C -0.14 -2.67 5.31 -104.02 -0.55 -3.22 16 17 C -0.07 -1.14 10.03 -39.68 -0.40 -1.54 16 18 C -0.19 -3.09 10.04 -39.46 -0.40 -3.48 16 19 C 0.11 1.96 7.28 -39.51 -0.29 1.67 16 20 F -0.15 -2.62 17.26 2.25 0.04 -2.58 16 21 C -0.16 -3.13 10.05 -39.20 -0.39 -3.53 16 22 C 0.17 3.54 4.97 -83.41 -0.41 3.12 16 23 H 0.05 0.85 7.81 -51.93 -0.41 0.44 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 2.35 6.19 -51.93 -0.32 2.03 16 27 H 0.04 0.85 5.83 -51.93 -0.30 0.55 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.72 5.40 -51.93 -0.28 1.44 16 31 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.10 1.85 6.15 -51.93 -0.32 1.53 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 281.48 15.07 4.24 4.24 Total: -1.00 -26.83 281.48 -8.04 -34.87 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.33 Total: 2.90 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.86 Total: -20.54 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.11 Total: -34.53 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.83 -8.04 -34.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234031760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.184 kcal (2) G-P(sol) polarization free energy of solvation -26.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds