Wall clock time and date at job start Mon Mar 30 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47373 * 2 1 4 4 H 1.08993 * 109.47293 * 301.81707 * 3 2 1 5 5 C 1.50699 * 109.47123 * 181.81412 * 3 2 1 6 6 H 1.08003 * 119.99845 * 241.96344 * 5 3 2 7 7 C 1.37876 * 120.00137 * 61.96012 * 5 3 2 8 8 N 1.31517 * 119.99649 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00419 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46774 * 90.00241 * 9 7 5 11 11 H 1.48489 * 109.47527 * 210.00338 * 9 7 5 12 12 H 1.48501 * 109.47130 * 330.00699 * 9 7 5 13 13 N 1.46899 * 109.46897 * 61.81821 * 3 2 1 14 14 C 1.47903 * 111.00510 * 57.25113 * 13 3 2 15 15 C 1.54600 * 102.62755 * 94.57007 * 14 13 3 16 16 C 1.51575 * 102.82838 * 25.57242 * 15 14 13 17 17 C 1.37942 * 131.52716 * 163.79429 * 16 15 14 18 18 C 1.38263 * 120.10976 * 180.15505 * 17 16 15 19 19 C 1.38533 * 119.85781 * 0.46632 * 18 17 16 20 20 F 1.35099 * 119.89734 * 179.65638 * 19 18 17 21 21 C 1.38130 * 120.21090 * 359.38722 * 19 18 17 22 22 C 1.38984 * 107.94613 * 343.95272 * 16 15 14 23 23 H 1.09000 * 109.47003 * 294.97901 * 1 2 3 24 24 H 1.08994 * 109.47189 * 54.97903 * 1 2 3 25 25 H 1.08992 * 109.47516 * 174.98105 * 1 2 3 26 26 H 1.08996 * 109.46980 * 239.99735 * 2 1 3 27 27 H 1.09006 * 109.47052 * 120.00186 * 2 1 3 28 28 H 0.96998 * 119.99671 * 179.97438 * 8 7 5 29 29 H 1.08998 * 110.78101 * 212.85377 * 14 13 3 30 30 H 1.09003 * 110.77548 * 336.28777 * 14 13 3 31 31 H 1.09009 * 110.73703 * 143.90736 * 15 14 13 32 32 H 1.09000 * 110.74128 * 267.05269 * 15 14 13 33 33 H 1.07997 * 119.94772 * 0.38782 * 17 16 15 34 34 H 1.08002 * 120.07562 * 180.23905 * 18 17 16 35 35 H 1.07994 * 119.91054 * 180.34159 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6504 1.9656 -0.8732 5 6 3.5464 1.4426 -0.0450 6 1 4.1108 1.8736 0.7687 7 6 4.2039 0.8926 -1.1248 8 7 3.5164 0.3682 -2.1158 9 14 6.0710 0.8934 -1.1810 10 1 6.5857 -0.3489 -0.5509 11 1 6.5238 0.9560 -2.5938 12 1 6.5879 2.0736 -0.4427 13 7 1.5866 2.1221 1.2208 14 6 2.0424 1.4014 2.4293 15 6 3.3538 2.1376 2.7873 16 6 3.1435 3.5123 2.1844 17 6 3.7926 4.7115 2.3929 18 6 3.3968 5.8433 1.7044 19 6 2.3401 5.7730 0.8113 20 9 1.9482 6.8800 0.1434 21 6 1.6894 4.5735 0.5974 22 6 2.0882 3.4280 1.2839 23 1 -0.3633 0.4340 0.9315 24 1 -0.3633 0.5897 -0.8415 25 1 -0.3634 -1.0236 -0.0899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.9790 -0.0185 -2.8757 29 1 1.3135 1.4964 3.2341 30 1 2.2367 0.3528 2.2038 31 1 3.4759 2.2048 3.8685 32 1 4.2115 1.6411 2.3336 33 1 4.6138 4.7655 3.0922 34 1 3.9079 6.7810 1.8652 35 1 0.8698 4.5231 -0.1040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234031760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:44 Heat of formation + Delta-G solvation = -16.412056 kcal Electronic energy + Delta-G solvation = -18752.128847 eV Core-core repulsion = 15857.246853 eV Total energy + Delta-G solvation = -2894.881994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.84923 -41.76160 -37.98109 -35.23020 -33.60469 -32.54784 -30.07113 -29.34508 -28.40773 -24.93490 -24.03650 -22.90436 -22.19686 -20.65561 -18.69498 -18.35654 -17.55168 -16.86947 -16.58030 -16.50337 -16.15253 -15.21543 -15.00986 -14.76063 -14.51745 -14.30991 -13.90632 -13.44284 -13.12340 -13.01139 -12.97909 -12.83391 -12.67739 -12.53166 -12.20549 -12.00634 -11.75046 -11.57868 -11.20694 -10.93539 -10.44404 -10.09044 -9.56152 -8.70223 -8.03433 -6.23388 0.29710 0.41107 1.37105 1.40535 1.47708 2.40618 2.64593 2.97998 3.18770 3.53838 3.79688 4.04243 4.10566 4.26961 4.41738 4.44865 4.53186 4.67485 4.69563 4.85349 4.94443 4.96494 5.12810 5.15771 5.24530 5.29755 5.32279 5.38860 5.48769 5.60222 5.68304 5.75283 5.96453 6.01792 6.09817 6.39272 6.57190 6.93711 7.46968 8.93691 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017445 B = 0.009886 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.672524 B = 2831.706324 C = 3356.097622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C 0.228 3.772 4 H -0.003 1.003 5 C -0.555 4.555 6 H 0.082 0.918 7 C 0.022 3.978 8 N -0.915 5.915 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.270 1.270 13 N -0.501 5.501 14 C 0.050 3.950 15 C -0.099 4.099 16 C -0.151 4.151 17 C -0.065 4.065 18 C -0.174 4.174 19 C 0.096 3.904 20 F -0.147 7.147 21 C -0.179 4.179 22 C 0.139 3.861 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.259 0.741 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 4.738 10.145 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C 0.124 3.876 4 H 0.015 0.985 5 C -0.594 4.594 6 H 0.100 0.900 7 C -0.178 4.178 8 N -0.555 5.555 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.195 1.195 13 N -0.218 5.218 14 C -0.076 4.076 15 C -0.136 4.136 16 C -0.154 4.154 17 C -0.083 4.083 18 C -0.193 4.193 19 C 0.076 3.924 20 F -0.126 7.126 21 C -0.200 4.200 22 C 0.042 3.958 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.807 4.615 9.891 10.944 hybrid contribution 1.446 0.076 -1.076 1.804 sum 0.640 4.691 8.815 10.006 Atomic orbital electron populations 1.21603 0.96329 0.99974 1.00756 1.21571 0.94448 0.97482 1.01182 1.19164 0.92498 0.90990 0.84995 0.98485 1.22483 0.93117 1.38024 1.05792 0.90011 1.25599 1.01683 0.95109 0.95391 1.70030 1.36451 1.39990 1.09006 0.85817 0.81844 0.78669 0.76984 1.19692 1.21755 1.19492 1.60484 1.56522 0.99528 1.05279 1.23175 0.94584 0.98869 0.90990 1.21800 0.99729 0.90706 1.01384 1.21386 0.95958 0.96732 1.01306 1.20516 0.99161 0.89791 0.98871 1.21163 0.98113 1.01233 0.98820 1.17401 0.97295 0.82047 0.95658 1.91437 1.90623 1.51189 1.79370 1.20340 1.03893 0.91246 1.04557 1.19411 0.91732 0.90815 0.93882 0.92401 0.95219 0.93100 0.91925 0.93175 0.93158 0.88993 0.89504 0.87868 0.90191 0.82393 0.82166 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.70 71.98 0.70 -4.25 16 2 C -0.11 -4.88 5.00 30.59 0.15 -4.73 16 3 C 0.23 11.01 1.82 44.17 0.08 11.09 16 4 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 5 C -0.56 -28.38 7.19 25.60 0.18 -28.20 16 6 H 0.08 4.01 3.51 -2.91 -0.01 4.00 16 7 C 0.02 1.16 5.31 84.65 0.45 1.61 16 8 N -0.92 -51.53 11.45 21.45 0.25 -51.29 16 9 Si 0.94 42.43 29.54 68.60 2.03 44.46 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.50 -20.70 4.55 -669.03 -3.04 -23.74 16 14 C 0.05 1.72 6.43 86.65 0.56 2.28 16 15 C -0.10 -3.15 6.14 30.67 0.19 -2.96 16 16 C -0.15 -5.32 5.31 -19.48 -0.10 -5.42 16 17 C -0.07 -1.93 10.03 22.21 0.22 -1.70 16 18 C -0.17 -5.20 10.04 22.35 0.22 -4.97 16 19 C 0.10 3.39 7.28 22.31 0.16 3.55 16 20 F -0.15 -5.09 17.26 44.97 0.78 -4.32 16 21 C -0.18 -7.17 10.05 22.52 0.23 -6.95 16 22 C 0.14 5.65 4.97 38.28 0.19 5.84 16 23 H 0.06 2.06 7.81 -2.39 -0.02 2.05 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 3.23 6.19 -2.39 -0.01 3.21 16 27 H 0.05 2.12 5.83 -2.38 -0.01 2.10 16 28 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.09 3.07 5.40 -2.39 -0.01 3.05 16 31 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.08 2.86 6.15 -2.39 -0.01 2.84 16 33 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -58.78 281.48 4.34 -54.44 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.10 Total: 15.27 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.23 Total: -34.82 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.80 Total: -75.03 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.78 Total: -4.32 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -58.78 4.34 -54.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234031760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.029 kcal (2) G-P(sol) polarization free energy of solvation -58.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds