Wall clock time and date at job start Mon Mar 30 2020 07:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99903 * 2 1 4 4 H 1.48501 * 109.47184 * 264.75239 * 3 2 1 5 5 H 1.48502 * 109.47297 * 24.75040 * 3 2 1 6 6 H 1.48500 * 109.47359 * 144.75199 * 3 2 1 7 7 C 1.37875 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00278 * 354.86569 * 7 2 1 9 9 C 1.50706 * 120.00046 * 174.87100 * 7 2 1 10 10 H 1.09000 * 109.46985 * 0.77836 * 9 7 2 11 11 N 1.46897 * 109.46926 * 240.77983 * 9 7 2 12 12 C 1.46897 * 111.00187 * 84.28533 * 11 9 7 13 13 C 1.52999 * 109.46854 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47269 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47621 * 179.97438 * 14 13 12 16 16 O 1.42897 * 109.47138 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47200 * 120.77559 * 9 7 2 18 18 C 1.38240 * 119.99794 * 253.72259 * 17 9 7 19 19 C 1.38230 * 119.99447 * 179.97438 * 18 17 9 20 20 C 1.38236 * 120.00451 * 359.95989 * 19 18 17 21 21 C 1.38234 * 119.99821 * 359.97438 * 20 19 18 22 22 C 1.38230 * 119.99957 * 73.70072 * 17 9 7 23 23 H 0.96993 * 120.00092 * 359.97438 * 1 2 3 24 24 H 1.00898 * 111.00183 * 320.32672 * 11 9 7 25 25 H 1.08998 * 109.47280 * 299.99858 * 12 11 9 26 26 H 1.08999 * 109.46839 * 59.99804 * 12 11 9 27 27 H 1.09007 * 109.47359 * 299.99885 * 13 12 11 28 28 H 1.08999 * 109.47412 * 60.00333 * 13 12 11 29 29 H 1.09007 * 109.46786 * 300.00174 * 14 13 12 30 30 H 1.09006 * 109.46995 * 59.99631 * 14 13 12 31 31 H 1.08998 * 109.47110 * 300.00176 * 15 14 13 32 32 H 1.09001 * 109.46818 * 59.99520 * 15 14 13 33 33 H 0.96703 * 113.99874 * 180.02562 * 16 15 14 34 34 H 1.07997 * 120.00274 * 359.97438 * 18 17 9 35 35 H 1.08001 * 119.99745 * 179.97438 * 19 18 17 36 36 H 1.07995 * 120.00231 * 179.72113 * 20 19 18 37 37 H 1.07996 * 120.00098 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.99951 * 0.02562 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6075 1.9824 -1.3942 5 1 1.3955 2.6821 0.5862 6 1 3.4869 1.4748 0.8080 7 6 2.0046 -1.1940 0.0005 8 1 1.4678 -2.1275 0.0847 9 6 3.5071 -1.1967 -0.1161 10 1 3.8686 -0.1702 -0.1768 11 7 3.9028 -1.9276 -1.3274 12 6 3.8596 -1.0536 -2.5073 13 6 4.2778 -1.8483 -3.7461 14 6 4.2334 -0.9379 -4.9750 15 6 4.6522 -1.7324 -6.2137 16 8 4.6113 -0.8819 -7.3613 17 6 4.1037 -1.8688 1.0936 18 6 4.7291 -1.1118 2.0667 19 6 5.2758 -1.7282 3.1766 20 6 5.1966 -3.1015 3.3139 21 6 4.5700 -3.8582 2.3414 22 6 4.0253 -3.2421 1.2304 23 1 -0.4850 0.8400 0.0004 24 1 3.3262 -2.7447 -1.4613 25 1 2.8463 -0.6757 -2.6426 26 1 4.5435 -0.2169 -2.3649 27 1 5.2913 -2.2259 -3.6105 28 1 3.5942 -2.6853 -3.8887 29 1 3.2201 -0.5599 -5.1107 30 1 4.9172 -0.1011 -4.8322 31 1 5.6656 -2.1100 -6.0777 32 1 3.9687 -2.5694 -6.3566 33 1 4.8651 -1.3203 -8.1850 34 1 4.7904 -0.0389 1.9599 35 1 5.7647 -1.1369 3.9367 36 1 5.6277 -3.5835 4.1788 37 1 4.5085 -4.9311 2.4484 38 1 3.5368 -3.8334 0.4701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236503367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:45 Heat of formation + Delta-G solvation = -65.156311 kcal Electronic energy + Delta-G solvation = -17814.423333 eV Core-core repulsion = 15040.887934 eV Total energy + Delta-G solvation = -2773.535399 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10280 -38.33825 -37.41795 -35.20580 -33.94245 -31.88351 -31.54742 -29.11803 -27.38005 -24.54231 -23.60659 -22.80818 -22.07763 -21.29897 -19.27336 -18.21656 -17.59812 -17.01502 -16.65020 -16.20313 -15.88106 -15.45950 -15.15950 -14.89762 -14.50126 -14.49582 -14.05275 -13.78579 -13.59600 -13.25952 -12.92735 -12.86508 -12.57673 -12.39598 -12.10609 -11.90136 -11.87474 -11.63511 -11.56161 -11.29907 -10.86430 -10.81975 -9.63281 -9.44599 -9.03686 -8.40988 -6.45346 0.68872 0.75006 1.23565 1.25448 1.33681 2.21817 2.90250 3.16121 3.24061 3.77404 3.97912 4.11293 4.15939 4.29341 4.34038 4.39966 4.43960 4.52929 4.58682 4.63348 4.76078 4.86908 4.88800 4.92844 4.98732 5.04224 5.29023 5.32766 5.37913 5.39872 5.44283 5.75832 5.80122 5.97755 6.04164 6.31830 6.40615 6.61346 6.74907 6.92580 7.22317 8.75172 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.006499 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.843805 B = 4307.339987 C = 5416.124389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.026 3.974 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.528 4.528 8 H 0.039 0.961 9 C 0.210 3.790 10 H 0.041 0.959 11 N -0.674 5.674 12 C 0.062 3.938 13 C -0.097 4.097 14 C -0.121 4.121 15 C 0.081 3.919 16 O -0.599 6.599 17 C -0.048 4.048 18 C -0.155 4.155 19 C -0.122 4.122 20 C -0.142 4.142 21 C -0.124 4.124 22 C -0.120 4.120 23 H 0.267 0.733 24 H 0.334 0.666 25 H 0.005 0.995 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.398 0.602 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.651 -5.129 -4.470 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.174 4.174 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.567 4.567 8 H 0.057 0.943 9 C 0.101 3.899 10 H 0.059 0.941 11 N -0.303 5.303 12 C -0.068 4.068 13 C -0.134 4.134 14 C -0.159 4.159 15 C 0.003 3.997 16 O -0.408 6.408 17 C -0.049 4.049 18 C -0.174 4.174 19 C -0.140 4.140 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.139 4.139 23 H 0.076 0.924 24 H 0.150 0.850 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.989 -4.488 -3.933 14.294 hybrid contribution -1.354 0.752 -0.508 1.630 sum 11.634 -3.736 -4.441 13.001 Atomic orbital electron populations 1.70029 1.07995 1.28102 1.51512 1.25852 0.95359 1.02444 0.93726 0.86104 0.79662 0.79718 0.79683 1.18995 1.21066 1.17047 1.21685 0.91437 0.93341 1.50249 0.94295 1.18490 0.91351 0.93194 0.86846 0.94064 1.61078 1.57817 1.09269 1.02149 1.21820 0.97954 0.96066 0.90969 1.21314 1.02776 0.97771 0.91584 1.21467 1.01539 0.99141 0.93742 1.22160 1.00667 0.92079 0.84780 1.86436 1.92372 1.42414 1.19548 1.20224 0.93839 0.94588 0.96283 1.21140 1.00823 0.99381 0.96037 1.21310 0.99770 0.95697 0.97209 1.21339 1.00967 0.93746 0.99980 1.21399 0.98182 1.00748 0.93874 1.20937 1.00350 0.94035 0.98566 0.92409 0.84952 0.97646 0.92698 0.89948 0.91491 0.93142 0.91928 0.91837 0.92570 0.75245 0.87709 0.84151 0.83437 0.84108 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 2 C 0.03 1.48 5.47 84.65 0.46 1.95 16 3 Si 0.92 44.11 27.02 68.60 1.85 45.96 16 4 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.25 -11.01 6.33 99.48 0.63 -10.37 16 7 C -0.53 -29.33 8.55 25.60 0.22 -29.11 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 9 C 0.21 9.78 2.15 43.43 0.09 9.87 16 10 H 0.04 1.98 4.15 -2.39 -0.01 1.97 16 11 N -0.67 -27.41 5.85 -499.36 -2.92 -30.33 16 12 C 0.06 2.34 5.48 86.30 0.47 2.82 16 13 C -0.10 -2.76 5.47 30.60 0.17 -2.59 16 14 C -0.12 -3.27 5.58 30.59 0.17 -3.10 16 15 C 0.08 1.70 7.05 71.98 0.51 2.20 16 16 O -0.60 -13.20 13.66 -148.98 -2.03 -15.23 16 17 C -0.05 -2.07 4.93 -19.86 -0.10 -2.17 16 18 C -0.16 -6.10 9.67 22.27 0.22 -5.89 16 19 C -0.12 -3.88 10.05 22.27 0.22 -3.66 16 20 C -0.14 -4.11 10.05 22.27 0.22 -3.89 16 21 C -0.12 -3.91 10.05 22.27 0.22 -3.68 16 22 C -0.12 -4.63 9.27 22.27 0.21 -4.43 16 23 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 24 H 0.33 13.48 7.90 -89.70 -0.71 12.77 16 25 H 0.01 0.23 7.97 -2.39 -0.02 0.21 16 26 H 0.05 2.08 8.06 -2.39 -0.02 2.06 16 27 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.40 4.48 9.12 -74.06 -0.68 3.81 16 34 H 0.10 4.11 7.64 -2.91 -0.02 4.09 16 35 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 36 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.11 4.20 7.45 -2.91 -0.02 4.18 16 Total: -1.00 -67.76 316.48 -0.13 -67.89 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.41 Total: 30.90 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 3.09 Total: -41.68 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.62 Total: -87.83 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -2.03 Total: -15.23 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.85 Total: 45.96 kcal Total: -67.76 -0.13 -67.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236503367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.730 kcal (2) G-P(sol) polarization free energy of solvation -67.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds