Wall clock time and date at job start Mon Mar 30 2020 07:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47137 * 300.00380 * 3 2 1 6 6 H 1.48500 * 109.47151 * 60.00158 * 3 2 1 7 7 C 1.37875 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00150 * 185.10259 * 7 2 1 9 9 C 1.50700 * 120.00110 * 5.11289 * 7 2 1 10 10 H 1.08999 * 109.47334 * 24.75857 * 9 7 2 11 11 N 1.46894 * 109.47250 * 144.76274 * 9 7 2 12 12 C 1.46896 * 111.00232 * 274.99844 * 11 9 7 13 13 C 1.52999 * 109.47344 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46955 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46955 * 179.97438 * 14 13 12 16 16 O 1.42896 * 109.47603 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.46695 * 264.76506 * 9 7 2 18 18 C 1.38242 * 119.99885 * 285.39483 * 17 9 7 19 19 C 1.38231 * 120.00121 * 179.81225 * 18 17 9 20 20 C 1.38237 * 119.99943 * 0.39604 * 19 18 17 21 21 C 1.38235 * 119.99616 * 359.85943 * 20 19 18 22 22 C 1.38224 * 120.00370 * 105.67003 * 17 9 7 23 23 H 0.96997 * 120.00402 * 359.97438 * 1 2 3 24 24 H 1.00907 * 110.99664 * 151.04268 * 11 9 7 25 25 H 1.08999 * 109.47328 * 59.99497 * 12 11 9 26 26 H 1.09003 * 109.47168 * 299.99853 * 12 11 9 27 27 H 1.08997 * 109.47365 * 299.99910 * 13 12 11 28 28 H 1.09004 * 109.47431 * 59.99864 * 13 12 11 29 29 H 1.08994 * 109.46916 * 299.99457 * 14 13 12 30 30 H 1.08992 * 109.47007 * 60.00233 * 14 13 12 31 31 H 1.09007 * 109.47175 * 300.00039 * 15 14 13 32 32 H 1.08999 * 109.47502 * 59.99504 * 15 14 13 33 33 H 0.96698 * 114.00496 * 179.97438 * 16 15 14 34 34 H 1.08006 * 119.99482 * 359.97438 * 18 17 9 35 35 H 1.08001 * 119.99683 * 180.23142 * 19 18 17 36 36 H 1.07997 * 119.99841 * 179.83053 * 20 19 18 37 37 H 1.08002 * 119.99468 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.00391 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0826 9 6 1.2556 -2.4965 -0.1174 10 1 0.3017 -2.3237 -0.6156 11 7 2.0516 -3.4504 -0.9011 12 6 1.8276 -3.2651 -2.3410 13 6 2.6711 -4.2745 -3.1225 14 6 2.4372 -4.0819 -4.6222 15 6 3.2811 -5.0908 -5.4037 16 8 3.0633 -4.9106 -6.8044 17 6 1.0089 -3.0592 1.2587 18 6 2.0464 -3.6390 1.9646 19 6 1.8210 -4.1517 3.2284 20 6 0.5562 -4.0919 3.7830 21 6 -0.4825 -3.5169 3.0749 22 6 -0.2561 -3.0007 1.8127 23 1 -0.4850 0.8400 0.0004 24 1 1.8538 -4.4002 -0.6236 25 1 2.1148 -2.2531 -2.6261 26 1 0.7728 -3.4209 -2.5677 27 1 3.7259 -4.1192 -2.8960 28 1 2.3834 -5.2865 -2.8373 29 1 1.3824 -4.2376 -4.8483 30 1 2.7246 -3.0700 -4.9077 31 1 4.3360 -4.9347 -5.1774 32 1 2.9943 -6.1029 -5.1182 33 1 3.5681 -5.5180 -7.3623 34 1 3.0338 -3.6890 1.5296 35 1 2.6325 -4.6013 3.7813 36 1 0.3795 -4.4949 4.7693 37 1 -1.4707 -3.4706 3.5081 38 1 -1.0678 -2.5514 1.2596 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236504329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:49 Heat of formation + Delta-G solvation = -43.049777 kcal Electronic energy + Delta-G solvation = -17718.685635 eV Core-core repulsion = 14946.108847 eV Total energy + Delta-G solvation = -2772.576788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.43810 -37.27714 -35.81003 -33.65186 -31.95739 -30.18155 -29.96163 -27.28740 -25.67689 -23.01027 -21.91317 -21.35833 -20.70379 -19.81495 -17.31423 -16.56608 -15.84582 -15.76376 -14.78669 -14.71018 -14.17573 -14.09415 -13.91216 -13.26651 -13.07581 -12.60476 -12.33419 -12.13195 -11.81040 -11.52194 -11.35843 -11.17568 -10.96491 -10.85818 -10.56280 -10.36067 -10.19413 -10.03201 -9.98269 -9.64737 -9.52172 -8.54163 -8.03219 -7.68361 -7.29341 -6.06797 -4.09813 2.30319 2.32684 3.28108 3.36250 3.41442 4.16499 4.38983 4.72551 5.04955 5.15036 5.23513 5.34342 5.41225 5.57687 5.66877 5.76985 5.85052 5.89073 5.96331 6.11619 6.21104 6.29447 6.39113 6.45659 6.55053 6.66557 6.80114 6.90601 6.99305 7.25957 7.33096 7.39921 7.54792 7.72027 7.84920 7.92007 8.16156 8.19673 8.69721 9.02715 9.53812 10.98506 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.006309 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.488607 B = 4436.731789 C = 5838.341453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.484 4.484 8 H 0.064 0.936 9 C 0.234 3.766 10 H 0.040 0.960 11 N -0.686 5.686 12 C 0.073 3.927 13 C -0.112 4.112 14 C -0.119 4.119 15 C 0.076 3.924 16 O -0.577 6.577 17 C -0.036 4.036 18 C -0.111 4.111 19 C -0.135 4.135 20 C -0.153 4.153 21 C -0.131 4.131 22 C -0.110 4.110 23 H 0.261 0.739 24 H 0.312 0.688 25 H 0.076 0.924 26 H 0.015 0.985 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.375 0.625 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -9.909 -3.514 11.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.523 4.523 8 H 0.082 0.918 9 C 0.127 3.873 10 H 0.058 0.942 11 N -0.315 5.315 12 C -0.057 4.057 13 C -0.151 4.151 14 C -0.157 4.157 15 C -0.002 4.002 16 O -0.382 6.382 17 C -0.037 4.037 18 C -0.129 4.129 19 C -0.153 4.153 20 C -0.171 4.171 21 C -0.149 4.149 22 C -0.129 4.129 23 H 0.071 0.929 24 H 0.128 0.872 25 H 0.095 0.905 26 H 0.033 0.967 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.221 0.779 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.243 -8.898 -3.285 10.024 hybrid contribution -0.146 0.268 -0.062 0.312 sum 3.096 -8.630 -3.347 9.761 Atomic orbital electron populations 1.69931 1.05959 1.26774 1.49986 1.25034 0.94915 0.99435 0.94800 0.86488 0.80326 0.83437 0.77513 1.19555 1.20991 1.21091 1.21037 0.93624 0.88752 1.48870 0.91799 1.18411 0.93520 0.89707 0.85621 0.94173 1.60780 1.61408 1.06631 1.02726 1.21730 0.95757 0.99397 0.88793 1.21499 1.01558 0.99363 0.92634 1.21496 1.00206 0.99462 0.94571 1.22258 0.98788 0.98502 0.80611 1.86500 1.71446 1.62687 1.17612 1.20688 0.91789 0.91725 0.99494 1.20991 0.99331 0.98605 0.94015 1.20991 0.96373 1.01719 0.96187 1.20823 0.93754 1.03131 0.99402 1.20988 0.98198 1.00238 0.95518 1.21104 0.97581 0.98844 0.95372 0.92889 0.87166 0.90546 0.96654 0.91261 0.92731 0.91550 0.91104 0.93682 0.93902 0.77877 0.86250 0.87604 0.87780 0.87608 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 12.84 55.43 0.71 -24.21 16 2 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.48 -12.99 8.31 -34.44 -0.29 -13.28 16 8 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.23 5.64 2.29 -70.02 -0.16 5.48 16 10 H 0.04 1.08 6.83 -51.93 -0.35 0.73 16 11 N -0.69 -14.08 5.83 -109.19 -0.64 -14.72 16 12 C 0.07 1.37 5.48 -3.83 -0.02 1.35 16 13 C -0.11 -1.64 5.47 -26.73 -0.15 -1.79 16 14 C -0.12 -1.62 5.58 -26.73 -0.15 -1.77 16 15 C 0.08 0.86 7.05 37.16 0.26 1.13 16 16 O -0.58 -6.76 13.66 -35.23 -0.48 -7.24 16 17 C -0.04 -0.81 4.65 -104.62 -0.49 -1.29 16 18 C -0.11 -2.28 9.08 -39.58 -0.36 -2.64 16 19 C -0.13 -2.45 10.05 -39.58 -0.40 -2.84 16 20 C -0.15 -2.71 10.05 -39.58 -0.40 -3.10 16 21 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 22 C -0.11 -2.41 9.67 -39.59 -0.38 -2.80 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.31 5.88 8.13 -39.29 -0.32 5.57 16 25 H 0.08 1.61 8.00 -51.93 -0.42 1.19 16 26 H 0.02 0.29 8.06 -51.93 -0.42 -0.12 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 2.46 9.12 45.56 0.42 2.88 16 34 H 0.12 2.41 7.89 -52.48 -0.41 2.00 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.12 2.70 8.00 -52.48 -0.42 2.28 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -29.50 321.53 -8.88 -38.38 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.28 Total: 9.50 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -3.02 Total: -22.89 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.08 Total: -38.93 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.48 Total: -7.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.50 -8.88 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236504329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.673 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds