Wall clock time and date at job start Mon Mar 30 2020 07:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47137 * 300.00380 * 3 2 1 6 6 H 1.48500 * 109.47151 * 60.00158 * 3 2 1 7 7 C 1.37875 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00150 * 185.10259 * 7 2 1 9 9 C 1.50700 * 120.00110 * 5.11289 * 7 2 1 10 10 H 1.08999 * 109.47334 * 24.75857 * 9 7 2 11 11 N 1.46894 * 109.47250 * 144.76274 * 9 7 2 12 12 C 1.46896 * 111.00232 * 274.99844 * 11 9 7 13 13 C 1.52999 * 109.47344 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46955 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46955 * 179.97438 * 14 13 12 16 16 O 1.42896 * 109.47603 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.46695 * 264.76506 * 9 7 2 18 18 C 1.38242 * 119.99885 * 285.39483 * 17 9 7 19 19 C 1.38231 * 120.00121 * 179.81225 * 18 17 9 20 20 C 1.38237 * 119.99943 * 0.39604 * 19 18 17 21 21 C 1.38235 * 119.99616 * 359.85943 * 20 19 18 22 22 C 1.38224 * 120.00370 * 105.67003 * 17 9 7 23 23 H 0.96997 * 120.00402 * 359.97438 * 1 2 3 24 24 H 1.00907 * 110.99664 * 151.04268 * 11 9 7 25 25 H 1.08999 * 109.47328 * 59.99497 * 12 11 9 26 26 H 1.09003 * 109.47168 * 299.99853 * 12 11 9 27 27 H 1.08997 * 109.47365 * 299.99910 * 13 12 11 28 28 H 1.09004 * 109.47431 * 59.99864 * 13 12 11 29 29 H 1.08994 * 109.46916 * 299.99457 * 14 13 12 30 30 H 1.08992 * 109.47007 * 60.00233 * 14 13 12 31 31 H 1.09007 * 109.47175 * 300.00039 * 15 14 13 32 32 H 1.08999 * 109.47502 * 59.99504 * 15 14 13 33 33 H 0.96698 * 114.00496 * 179.97438 * 16 15 14 34 34 H 1.08006 * 119.99482 * 359.97438 * 18 17 9 35 35 H 1.08001 * 119.99683 * 180.23142 * 19 18 17 36 36 H 1.07997 * 119.99841 * 179.83053 * 20 19 18 37 37 H 1.08002 * 119.99468 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.00391 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0826 9 6 1.2556 -2.4965 -0.1174 10 1 0.3017 -2.3237 -0.6156 11 7 2.0516 -3.4504 -0.9011 12 6 1.8276 -3.2651 -2.3410 13 6 2.6711 -4.2745 -3.1225 14 6 2.4372 -4.0819 -4.6222 15 6 3.2811 -5.0908 -5.4037 16 8 3.0633 -4.9106 -6.8044 17 6 1.0089 -3.0592 1.2587 18 6 2.0464 -3.6390 1.9646 19 6 1.8210 -4.1517 3.2284 20 6 0.5562 -4.0919 3.7830 21 6 -0.4825 -3.5169 3.0749 22 6 -0.2561 -3.0007 1.8127 23 1 -0.4850 0.8400 0.0004 24 1 1.8538 -4.4002 -0.6236 25 1 2.1148 -2.2531 -2.6261 26 1 0.7728 -3.4209 -2.5677 27 1 3.7259 -4.1192 -2.8960 28 1 2.3834 -5.2865 -2.8373 29 1 1.3824 -4.2376 -4.8483 30 1 2.7246 -3.0700 -4.9077 31 1 4.3360 -4.9347 -5.1774 32 1 2.9943 -6.1029 -5.1182 33 1 3.5681 -5.5180 -7.3623 34 1 3.0338 -3.6890 1.5296 35 1 2.6325 -4.6013 3.7813 36 1 0.3795 -4.4949 4.7693 37 1 -1.4707 -3.4706 3.5081 38 1 -1.0678 -2.5514 1.2596 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236504329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:48 Heat of formation + Delta-G solvation = -63.105200 kcal Electronic energy + Delta-G solvation = -17719.555303 eV Core-core repulsion = 14946.108847 eV Total energy + Delta-G solvation = -2773.446456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03507 -38.29797 -37.28537 -35.20437 -33.74927 -31.69054 -31.49216 -28.81678 -27.40408 -24.61359 -23.40603 -22.74004 -22.07321 -21.47551 -18.51225 -18.21444 -17.46376 -16.92406 -16.67078 -16.16104 -15.81784 -15.52581 -15.11233 -14.85205 -14.47555 -14.20281 -13.90849 -13.78174 -13.33016 -13.02194 -12.88343 -12.78396 -12.50660 -12.43261 -11.98477 -11.91925 -11.70690 -11.57999 -11.47197 -11.36862 -10.85106 -10.58274 -9.57656 -9.30879 -9.07743 -8.12126 -6.22805 0.74526 0.77716 1.36603 1.38773 1.50368 2.39534 3.04217 3.23331 3.27554 3.83459 4.00292 4.13307 4.28198 4.32378 4.38316 4.43479 4.46821 4.59026 4.65767 4.76911 4.84300 4.89871 4.96941 4.99237 5.10328 5.19997 5.36747 5.39418 5.42113 5.47638 5.71350 5.80446 5.83227 6.08528 6.16894 6.35936 6.46011 6.91348 6.93955 7.01307 7.43920 8.91053 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.006309 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.488607 B = 4436.731789 C = 5838.341453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.494 4.494 8 H 0.052 0.948 9 C 0.242 3.758 10 H -0.001 1.001 11 N -0.681 5.681 12 C 0.075 3.925 13 C -0.096 4.096 14 C -0.119 4.119 15 C 0.081 3.919 16 O -0.599 6.599 17 C -0.062 4.062 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.131 4.131 22 C -0.135 4.135 23 H 0.261 0.739 24 H 0.325 0.675 25 H 0.045 0.955 26 H 0.004 0.996 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.398 0.602 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -11.596 -2.215 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.533 4.533 8 H 0.070 0.930 9 C 0.134 3.866 10 H 0.017 0.983 11 N -0.311 5.311 12 C -0.055 4.055 13 C -0.134 4.134 14 C -0.157 4.157 15 C 0.003 3.997 16 O -0.408 6.408 17 C -0.063 4.063 18 C -0.139 4.139 19 C -0.145 4.145 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.154 4.154 23 H 0.070 0.930 24 H 0.142 0.858 25 H 0.064 0.936 26 H 0.022 0.978 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.576 -10.613 -2.003 11.730 hybrid contribution -0.574 0.699 -0.442 1.007 sum 4.002 -9.913 -2.445 10.967 Atomic orbital electron populations 1.70057 1.07099 1.27205 1.51340 1.25726 0.95659 1.02376 0.94887 0.85599 0.79267 0.79900 0.77488 1.19113 1.20634 1.20809 1.21218 0.93095 0.90385 1.48575 0.93020 1.18121 0.91489 0.89969 0.87010 0.98304 1.60671 1.60340 1.06766 1.03293 1.21723 0.96036 0.99276 0.88467 1.21323 1.00658 0.98740 0.92631 1.21444 1.00363 0.99652 0.94253 1.22164 0.98827 0.98325 0.80371 1.86435 1.72365 1.63975 1.17994 1.20561 0.93033 0.93851 0.98832 1.21039 0.98532 0.99082 0.95236 1.21398 0.97834 1.00194 0.95047 1.21300 0.92799 1.01254 1.00664 1.21286 1.00154 0.99269 0.94223 1.21055 0.96834 1.00527 0.97007 0.93050 0.85820 0.93599 0.97776 0.90842 0.90749 0.92384 0.92702 0.92387 0.92045 0.75255 0.86377 0.83882 0.83592 0.85072 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.79 12.84 21.45 0.28 -53.51 16 2 C 0.01 0.72 5.45 84.65 0.46 1.19 16 3 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.49 -27.50 8.31 25.60 0.21 -27.29 16 8 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 9 C 0.24 12.22 2.29 43.42 0.10 12.31 16 10 H 0.00 -0.05 6.83 -2.39 -0.02 -0.07 16 11 N -0.68 -28.78 5.83 -499.38 -2.91 -31.69 16 12 C 0.07 2.93 5.48 86.30 0.47 3.40 16 13 C -0.10 -2.74 5.47 30.60 0.17 -2.58 16 14 C -0.12 -3.20 5.58 30.60 0.17 -3.03 16 15 C 0.08 1.67 7.05 71.98 0.51 2.18 16 16 O -0.60 -13.02 13.66 -148.98 -2.03 -15.06 16 17 C -0.06 -2.84 4.65 -19.87 -0.09 -2.93 16 18 C -0.12 -4.82 9.08 22.27 0.20 -4.62 16 19 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 20 C -0.14 -4.48 10.05 22.27 0.22 -4.25 16 21 C -0.13 -4.75 10.05 22.27 0.22 -4.53 16 22 C -0.14 -6.05 9.67 22.27 0.22 -5.84 16 23 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.32 12.35 8.13 -89.69 -0.73 11.62 16 25 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 26 H 0.00 0.17 8.06 -2.39 -0.02 0.15 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.40 4.36 9.12 -74.06 -0.68 3.69 16 34 H 0.12 4.67 7.89 -2.91 -0.02 4.65 16 35 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 36 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.09 4.48 8.00 -2.91 -0.02 4.46 16 Total: -1.00 -66.15 321.53 0.08 -66.07 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.37 Total: 27.24 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.09 Total: -39.93 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -2.63 Total: -85.20 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -2.03 Total: -15.06 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.15 0.08 -66.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236504329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.960 kcal (2) G-P(sol) polarization free energy of solvation -66.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds