Wall clock time and date at job start Mon Mar 30 2020 07:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86296 * 109.47277 * 2 1 4 4 C 1.86298 * 109.47044 * 239.99875 * 2 1 3 5 5 C 1.86301 * 109.46921 * 119.99740 * 2 1 3 6 6 N 1.46902 * 109.46990 * 59.99736 * 5 2 1 7 7 C 1.46903 * 110.99823 * 95.00167 * 6 5 2 8 8 C 1.50703 * 109.47446 * 84.99773 * 7 6 5 9 9 N 1.27938 * 119.99654 * 35.00063 * 8 7 6 10 10 Si 1.86794 * 119.99987 * 215.00190 * 8 7 6 11 11 H 1.48498 * 109.47302 * 90.00256 * 10 8 7 12 12 H 1.48500 * 109.47126 * 209.99808 * 10 8 7 13 13 H 1.48504 * 109.47243 * 329.99749 * 10 8 7 14 14 C 1.50701 * 109.47051 * 205.00047 * 7 6 5 15 15 C 1.38235 * 119.99808 * 139.99832 * 14 7 6 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 7 17 17 C 1.38232 * 120.00069 * 0.09581 * 16 15 14 18 18 C 1.38234 * 119.99866 * 359.86117 * 17 16 15 19 19 C 1.38230 * 119.99865 * 319.97577 * 14 7 6 20 20 H 1.08998 * 109.47261 * 300.00431 * 1 2 3 21 21 H 1.09000 * 109.47065 * 60.00007 * 1 2 3 22 22 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47501 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47067 * 299.99991 * 3 2 1 25 25 H 1.08998 * 109.47328 * 59.99610 * 3 2 1 26 26 H 1.09006 * 109.47074 * 300.00144 * 4 2 1 27 27 H 1.08991 * 109.47311 * 60.00245 * 4 2 1 28 28 H 1.08999 * 109.47022 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47014 * 299.99980 * 5 2 1 30 30 H 1.08999 * 109.47395 * 179.97438 * 5 2 1 31 31 H 1.00893 * 111.00467 * 331.04884 * 6 5 2 32 32 H 1.09004 * 109.46823 * 324.99845 * 7 6 5 33 33 H 0.97000 * 120.00350 * 180.02562 * 9 8 7 34 34 H 1.08000 * 120.00616 * 359.70324 * 15 14 7 35 35 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 36 36 H 1.07997 * 119.99666 * 179.97438 * 17 16 15 37 37 H 1.08000 * 119.99729 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.00371 * 0.02562 * 19 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 7 1.9942 -2.2631 1.5212 7 6 2.9906 -3.1739 0.9417 8 6 3.9718 -3.5891 2.0076 9 7 3.5753 -3.7534 3.2129 10 14 5.7666 -3.8637 1.5689 11 1 6.5149 -2.5908 1.7260 12 1 6.3447 -4.8922 2.4707 13 1 5.8670 -4.3267 0.1615 14 6 2.2970 -4.3947 0.3944 15 6 2.7108 -4.9456 -0.8040 16 6 2.0748 -6.0658 -1.3058 17 6 1.0239 -6.6338 -0.6103 18 6 0.6107 -6.0833 0.5885 19 6 1.2473 -4.9637 1.0909 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.5741 1.7564 -0.0005 24 1 2.1207 2.2702 -0.8900 25 1 2.1207 2.2703 0.8899 26 1 2.1206 -1.9060 -1.5211 27 1 2.1207 -0.3645 -2.4110 28 1 3.5740 -0.8786 -1.5209 29 1 2.1206 -0.3643 2.4111 30 1 3.5740 -0.8786 1.5210 31 1 1.1129 -2.3351 1.0354 32 1 3.5219 -2.6663 0.1366 33 1 4.2069 -4.0203 3.8990 34 1 3.5280 -4.4985 -1.3504 35 1 2.3979 -6.4961 -2.2423 36 1 0.5269 -7.5086 -1.0025 37 1 -0.2101 -6.5272 1.1322 38 1 0.9240 -4.5332 2.0271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238525834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:37 Heat of formation + Delta-G solvation = 14.683282 kcal Electronic energy + Delta-G solvation = -16691.456341 eV Core-core repulsion = 14270.933755 eV Total energy + Delta-G solvation = -2420.522586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51136 -37.87317 -35.01984 -32.29908 -31.70596 -29.61090 -28.58031 -28.48470 -27.77398 -25.04366 -23.25121 -22.89103 -20.29454 -18.04424 -17.80673 -16.56194 -15.97570 -15.71873 -15.50004 -14.84760 -14.40710 -14.29021 -14.22772 -14.11957 -14.01700 -13.84590 -13.70573 -13.35936 -13.31062 -13.23659 -13.13494 -12.97208 -12.87052 -12.33159 -12.02018 -11.89533 -11.42372 -11.23257 -10.91347 -10.86984 -9.93600 -9.75122 -9.46425 -8.82719 0.39524 0.56878 0.94611 1.07833 1.35678 1.66929 1.73943 1.75551 1.77442 1.82899 2.55607 2.90831 3.36628 3.71424 3.84285 4.06430 4.19217 4.32514 4.36526 4.54530 4.63858 4.64816 4.66558 4.70169 4.71000 4.72528 4.73747 4.79133 4.99091 5.13935 5.15924 5.24525 5.39748 5.47984 5.50609 5.59788 5.67343 5.70322 6.07633 6.15582 6.47251 7.08420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 0.949 3.051 3 C -0.444 4.444 4 C -0.450 4.450 5 C -0.226 4.226 6 N -0.643 5.643 7 C 0.157 3.843 8 C -0.001 4.001 9 N -0.585 5.585 10 Si 0.909 3.091 11 H -0.238 1.238 12 H -0.244 1.244 13 H -0.231 1.231 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.124 4.124 19 C -0.088 4.088 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.339 0.661 32 H 0.072 0.928 33 H 0.330 0.670 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 0.378 -2.084 2.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.148 2.852 3 C -0.552 4.552 4 C -0.558 4.558 5 C -0.404 4.404 6 N -0.275 5.275 7 C 0.046 3.954 8 C -0.253 4.253 9 N -0.197 5.197 10 Si 0.725 3.275 11 H -0.161 1.161 12 H -0.167 1.167 13 H -0.153 1.153 14 C -0.095 4.095 15 C -0.132 4.132 16 C -0.141 4.141 17 C -0.134 4.134 18 C -0.142 4.142 19 C -0.107 4.107 20 H 0.090 0.910 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.159 0.841 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.866 0.215 -1.122 1.433 hybrid contribution 0.521 0.069 -0.848 0.998 sum 1.387 0.284 -1.970 2.426 Atomic orbital electron populations 1.26065 1.20100 1.04484 1.04615 0.80415 0.68455 0.68138 0.68237 1.26033 1.06147 1.18545 1.04506 1.26169 1.06170 1.08088 1.15340 1.26759 1.04540 0.95123 1.13967 1.60050 1.04522 1.04411 1.58515 1.19735 0.91794 0.91079 0.92744 1.30137 1.04631 0.94996 0.95506 1.68131 1.42107 1.06653 1.02801 0.86047 0.75505 0.82464 0.83479 1.16076 1.16671 1.15276 1.19652 0.97353 0.97319 0.95138 1.21093 0.99953 0.96618 0.95551 1.21124 0.96531 0.96311 1.00126 1.21238 0.97016 0.99822 0.95321 1.21247 1.00208 0.96504 0.96253 1.21169 0.94743 0.94944 0.99813 0.90989 0.91219 0.91244 0.91270 0.91311 0.91118 0.91134 0.90986 0.91206 0.89688 0.90548 0.84112 0.91044 0.85331 0.85990 0.85965 0.86112 0.85962 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.64 8.62 101.05 0.87 1.51 16 2 Si 0.95 -2.57 11.85 -169.99 -2.01 -4.59 16 3 C -0.44 0.66 8.65 101.05 0.87 1.54 16 4 C -0.45 0.87 7.73 101.05 0.78 1.65 16 5 C -0.23 0.27 5.13 60.07 0.31 0.58 16 6 N -0.64 0.00 5.42 -52.48 -0.28 -0.29 16 7 C 0.16 0.01 1.92 -70.01 -0.13 -0.13 16 8 C 0.00 0.00 4.52 -13.90 -0.06 -0.06 16 9 N -0.59 -1.06 13.44 56.23 0.76 -0.30 16 10 Si 0.91 -0.28 29.47 -169.99 -5.01 -5.29 16 11 H -0.24 0.00 7.11 56.52 0.40 0.40 16 12 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 13 H -0.23 0.10 7.11 56.52 0.40 0.51 16 14 C -0.09 -0.06 4.70 -104.63 -0.49 -0.56 16 15 C -0.11 -0.03 9.67 -39.58 -0.38 -0.41 16 16 C -0.12 -0.04 10.05 -39.58 -0.40 -0.43 16 17 C -0.12 -0.06 10.05 -39.58 -0.40 -0.45 16 18 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 19 C -0.09 -0.11 9.00 -39.59 -0.36 -0.47 16 20 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 21 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 22 H 0.07 -0.10 7.45 -51.93 -0.39 -0.48 16 23 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.12 7.77 -51.93 -0.40 -0.52 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 29 H 0.08 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H 0.08 -0.10 7.36 -51.93 -0.38 -0.49 16 31 H 0.34 -0.27 6.32 -39.30 -0.25 -0.52 16 32 H 0.07 -0.11 5.83 -51.93 -0.30 -0.42 16 33 H 0.33 0.12 8.23 -40.82 -0.34 -0.22 16 34 H 0.12 -0.17 8.04 -52.49 -0.42 -0.59 16 35 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 36 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 37 H 0.12 -0.06 8.06 -52.49 -0.42 -0.49 16 38 H 0.14 0.22 7.72 -52.49 -0.41 -0.18 16 LS Contribution 318.16 15.07 4.79 4.79 Total: 0.00 -3.56 318.16 -7.80 -11.36 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -6.26 Total: -7.96 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 0.21 Total: 2.26 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: 0.47 Total: -0.59 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: -7.02 Total: -9.87 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -3.56 -7.80 -11.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238525834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.046 kcal (2) G-P(sol) polarization free energy of solvation -3.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds