Wall clock time and date at job start Mon Mar 30 2020 07:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86296 * 109.47277 * 2 1 4 4 C 1.86298 * 109.47044 * 239.99875 * 2 1 3 5 5 C 1.86301 * 109.46921 * 119.99740 * 2 1 3 6 6 N 1.46902 * 109.46990 * 59.99736 * 5 2 1 7 7 C 1.46903 * 110.99823 * 95.00167 * 6 5 2 8 8 C 1.50703 * 109.47446 * 84.99773 * 7 6 5 9 9 N 1.27938 * 119.99654 * 35.00063 * 8 7 6 10 10 Si 1.86794 * 119.99987 * 215.00190 * 8 7 6 11 11 H 1.48498 * 109.47302 * 90.00256 * 10 8 7 12 12 H 1.48500 * 109.47126 * 209.99808 * 10 8 7 13 13 H 1.48504 * 109.47243 * 329.99749 * 10 8 7 14 14 C 1.50701 * 109.47051 * 205.00047 * 7 6 5 15 15 C 1.38235 * 119.99808 * 139.99832 * 14 7 6 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 7 17 17 C 1.38232 * 120.00069 * 0.09581 * 16 15 14 18 18 C 1.38234 * 119.99866 * 359.86117 * 17 16 15 19 19 C 1.38230 * 119.99865 * 319.97577 * 14 7 6 20 20 H 1.08998 * 109.47261 * 300.00431 * 1 2 3 21 21 H 1.09000 * 109.47065 * 60.00007 * 1 2 3 22 22 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47501 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47067 * 299.99991 * 3 2 1 25 25 H 1.08998 * 109.47328 * 59.99610 * 3 2 1 26 26 H 1.09006 * 109.47074 * 300.00144 * 4 2 1 27 27 H 1.08991 * 109.47311 * 60.00245 * 4 2 1 28 28 H 1.08999 * 109.47022 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47014 * 299.99980 * 5 2 1 30 30 H 1.08999 * 109.47395 * 179.97438 * 5 2 1 31 31 H 1.00893 * 111.00467 * 331.04884 * 6 5 2 32 32 H 1.09004 * 109.46823 * 324.99845 * 7 6 5 33 33 H 0.97000 * 120.00350 * 180.02562 * 9 8 7 34 34 H 1.08000 * 120.00616 * 359.70324 * 15 14 7 35 35 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 36 36 H 1.07997 * 119.99666 * 179.97438 * 17 16 15 37 37 H 1.08000 * 119.99729 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.00371 * 0.02562 * 19 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 7 1.9942 -2.2631 1.5212 7 6 2.9906 -3.1739 0.9417 8 6 3.9718 -3.5891 2.0076 9 7 3.5753 -3.7534 3.2129 10 14 5.7666 -3.8637 1.5689 11 1 6.5149 -2.5908 1.7260 12 1 6.3447 -4.8922 2.4707 13 1 5.8670 -4.3267 0.1615 14 6 2.2970 -4.3947 0.3944 15 6 2.7108 -4.9456 -0.8040 16 6 2.0748 -6.0658 -1.3058 17 6 1.0239 -6.6338 -0.6103 18 6 0.6107 -6.0833 0.5885 19 6 1.2473 -4.9637 1.0909 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.5741 1.7564 -0.0005 24 1 2.1207 2.2702 -0.8900 25 1 2.1207 2.2703 0.8899 26 1 2.1206 -1.9060 -1.5211 27 1 2.1207 -0.3645 -2.4110 28 1 3.5740 -0.8786 -1.5209 29 1 2.1206 -0.3643 2.4111 30 1 3.5740 -0.8786 1.5210 31 1 1.1129 -2.3351 1.0354 32 1 3.5219 -2.6663 0.1366 33 1 4.2069 -4.0203 3.8990 34 1 3.5280 -4.4985 -1.3504 35 1 2.3979 -6.4961 -2.2423 36 1 0.5269 -7.5086 -1.0025 37 1 -0.2101 -6.5272 1.1322 38 1 0.9240 -4.5332 2.0271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238525834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:36 Heat of formation + Delta-G solvation = 25.750392 kcal Electronic energy + Delta-G solvation = -16690.976435 eV Core-core repulsion = 14270.933755 eV Total energy + Delta-G solvation = -2420.042680 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49581 -37.85511 -35.03689 -32.27766 -31.69810 -29.47043 -28.43395 -28.34596 -27.73804 -24.99188 -23.24803 -22.88784 -20.29858 -18.02152 -17.82048 -16.52908 -15.96653 -15.68756 -15.46757 -14.80880 -14.37227 -14.20173 -14.12434 -14.03729 -13.92269 -13.74825 -13.64960 -13.28182 -13.20526 -13.13038 -13.00381 -12.91138 -12.83083 -12.29782 -12.01081 -11.87326 -11.32894 -11.24758 -10.77254 -10.72804 -9.95532 -9.76127 -9.47511 -8.75232 0.39133 0.55760 0.93990 1.08852 1.38556 1.75239 1.82522 1.84006 1.93967 1.96528 2.69168 2.90299 3.43235 3.73463 3.86475 4.10380 4.23429 4.37250 4.41346 4.63072 4.68786 4.79230 4.79989 4.80520 4.83895 4.84460 4.85048 4.85599 4.99527 5.15710 5.23862 5.25958 5.54248 5.60550 5.62508 5.64256 5.68087 5.69757 6.12565 6.18070 6.55327 7.08310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.023 2.977 3 C -0.460 4.460 4 C -0.461 4.461 5 C -0.239 4.239 6 N -0.656 5.656 7 C 0.152 3.848 8 C -0.006 4.006 9 N -0.611 5.611 10 Si 0.939 3.061 11 H -0.240 1.240 12 H -0.260 1.260 13 H -0.222 1.222 14 C -0.096 4.096 15 C -0.120 4.120 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.100 4.100 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.341 0.659 32 H 0.090 0.910 33 H 0.334 0.666 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 0.377 -3.118 3.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.217 2.783 3 C -0.567 4.567 4 C -0.568 4.568 5 C -0.415 4.415 6 N -0.288 5.288 7 C 0.042 3.958 8 C -0.256 4.256 9 N -0.224 5.224 10 Si 0.755 3.245 11 H -0.163 1.163 12 H -0.184 1.184 13 H -0.143 1.143 14 C -0.097 4.097 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.119 4.119 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.107 0.893 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.433 0.223 -2.153 2.596 hybrid contribution 0.317 0.065 -0.494 0.591 sum 1.750 0.288 -2.647 3.186 Atomic orbital electron populations 1.26277 1.21865 1.04310 1.04321 0.79294 0.66319 0.66283 0.66416 1.26222 1.06458 1.19699 1.04294 1.26279 1.06775 1.08161 1.15585 1.26974 1.04848 0.94797 1.14909 1.60001 1.04796 1.05013 1.59033 1.19863 0.91878 0.91067 0.93024 1.30498 1.05708 0.94055 0.95326 1.68161 1.42868 1.07774 1.03550 0.85620 0.73916 0.81635 0.83334 1.16343 1.18417 1.14348 1.19738 0.97172 0.97494 0.95336 1.21345 1.00393 0.96656 0.95438 1.21404 0.96314 0.96298 1.00718 1.21467 0.97320 1.00336 0.95226 1.21418 1.00594 0.96597 0.96735 1.21165 0.95492 0.95464 0.99758 0.91420 0.91363 0.91375 0.91029 0.91464 0.91407 0.91168 0.91047 0.90489 0.90486 0.90266 0.83853 0.89252 0.84964 0.84222 0.84335 0.84826 0.85288 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.16 8.62 113.37 0.98 2.14 16 2 Si 1.02 -5.77 11.85 68.60 0.81 -4.95 16 3 C -0.46 1.47 8.65 113.37 0.98 2.45 16 4 C -0.46 2.22 7.73 113.37 0.88 3.10 16 5 C -0.24 0.51 5.13 127.69 0.66 1.17 16 6 N -0.66 -0.34 5.42 -319.95 -1.73 -2.08 16 7 C 0.15 0.01 1.92 43.42 0.08 0.09 16 8 C -0.01 -0.01 4.52 88.68 0.40 0.39 16 9 N -0.61 -2.79 13.44 24.11 0.32 -2.47 16 10 Si 0.94 -0.99 29.47 68.60 2.02 1.03 16 11 H -0.24 0.16 7.11 99.48 0.71 0.87 16 12 H -0.26 -0.40 7.11 99.48 0.71 0.31 16 13 H -0.22 0.55 7.11 99.48 0.71 1.26 16 14 C -0.10 -0.14 4.70 -19.87 -0.09 -0.23 16 15 C -0.12 0.03 9.67 22.27 0.22 0.24 16 16 C -0.13 0.02 10.05 22.27 0.22 0.25 16 17 C -0.13 -0.10 10.05 22.27 0.22 0.12 16 18 C -0.14 -0.31 10.05 22.27 0.22 -0.08 16 19 C -0.10 -0.34 9.00 22.27 0.20 -0.14 16 20 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 21 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 22 H 0.07 -0.15 7.45 -2.39 -0.02 -0.17 16 23 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 24 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 25 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 26 H 0.07 -0.30 7.77 -2.38 -0.02 -0.32 16 27 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 29 H 0.08 -0.05 7.96 -2.39 -0.02 -0.07 16 30 H 0.08 -0.23 7.36 -2.39 -0.02 -0.25 16 31 H 0.34 -0.31 6.32 -89.70 -0.57 -0.87 16 32 H 0.09 -0.37 5.83 -2.39 -0.01 -0.38 16 33 H 0.33 0.64 8.23 -92.71 -0.76 -0.12 16 34 H 0.14 -0.61 8.04 -2.91 -0.02 -0.63 16 35 H 0.14 -0.55 8.06 -2.91 -0.02 -0.58 16 36 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.13 -0.02 8.06 -2.91 -0.02 -0.05 16 38 H 0.13 0.63 7.72 -2.91 -0.02 0.61 16 Total: 0.00 -8.33 318.16 6.85 -1.49 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: 0.45 Total: -2.52 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.97 Total: 9.50 kcal Atomic # 7 Polarization: -3.13 SS G_CDS: -1.41 Total: -4.54 kcal Atomic # 14 Polarization: -6.76 SS G_CDS: 2.83 Total: -3.92 kcal Total: -8.33 6.85 -1.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238525834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.237 kcal (2) G-P(sol) polarization free energy of solvation -8.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds