Wall clock time and date at job start Mon Mar 30 2020 07:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00043 * 2 1 4 4 H 1.48497 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47642 * 300.00042 * 3 2 1 6 6 H 1.48505 * 109.47274 * 60.00035 * 3 2 1 7 7 C 1.37875 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99638 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47191 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47022 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46694 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46697 * 179.97438 * 12 11 10 14 14 O 1.42905 * 109.46914 * 180.02562 * 13 12 11 15 15 C 1.36006 * 117.00040 * 180.02562 * 14 13 12 16 16 C 1.38505 * 120.07916 * 359.97438 * 15 14 13 17 17 C 1.38285 * 120.01992 * 179.97438 * 16 15 14 18 18 C 1.38262 * 120.17968 * 0.02562 * 17 16 15 19 19 C 1.38221 * 120.15675 * 359.97438 * 18 17 16 20 20 C 1.38728 * 119.98329 * 0.02562 * 19 18 17 21 21 N 1.39963 * 120.09000 * 180.02562 * 20 19 18 22 22 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47482 * 60.00070 * 9 7 2 24 24 H 1.09003 * 109.47153 * 299.99306 * 9 7 2 25 25 H 1.08996 * 109.46950 * 59.99621 * 10 9 7 26 26 H 1.09003 * 109.46405 * 299.99642 * 10 9 7 27 27 H 1.08994 * 109.46905 * 60.00027 * 11 10 9 28 28 H 1.08993 * 109.47048 * 299.99583 * 11 10 9 29 29 H 1.09010 * 109.47038 * 60.00161 * 12 11 10 30 30 H 1.08993 * 109.47358 * 299.99792 * 12 11 10 31 31 H 1.09004 * 109.46934 * 60.00967 * 13 12 11 32 32 H 1.08993 * 109.47371 * 300.00182 * 13 12 11 33 33 H 1.08003 * 119.99369 * 359.96020 * 16 15 14 34 34 H 1.07997 * 119.91569 * 179.72615 * 17 16 15 35 35 H 1.07999 * 119.91895 * 179.97438 * 18 17 16 36 36 H 1.08003 * 120.01009 * 179.97438 * 19 18 17 37 37 H 0.96996 * 120.00132 * 179.97438 * 21 20 19 38 38 H 0.96999 * 119.99627 * 359.97177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 2.4744 -6.1501 -0.0024 13 6 1.7093 -7.4751 -0.0023 14 8 2.6379 -8.5613 -0.0020 15 6 2.1181 -9.8181 -0.0025 16 6 0.7452 -10.0014 -0.0026 17 6 0.2180 -11.2798 -0.0035 18 6 1.0579 -12.3781 -0.0039 19 6 2.4291 -12.2036 -0.0038 20 6 2.9651 -10.9241 -0.0028 21 7 4.3533 -10.7449 -0.0033 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8881 25 1 2.8712 -3.6048 0.8890 26 1 2.8725 -3.6039 -0.8910 27 1 0.8539 -5.0447 -0.8922 28 1 0.8532 -5.0450 0.8877 29 1 3.1010 -6.0926 0.8877 30 1 3.1011 -6.0920 -0.8923 31 1 1.0825 -7.5327 -0.8922 32 1 1.0829 -7.5329 0.8878 33 1 0.0862 -9.1457 -0.0016 34 1 -0.8527 -11.4208 0.0009 35 1 0.6416 -13.3746 -0.0042 36 1 3.0830 -13.0632 -0.0036 37 1 4.7267 -9.8497 -0.0030 38 1 4.9418 -11.5159 -0.0038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238644182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:28 Heat of formation + Delta-G solvation = -45.044802 kcal Electronic energy + Delta-G solvation = -16906.041417 eV Core-core repulsion = 14133.378119 eV Total energy + Delta-G solvation = -2772.663298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23894 -37.68378 -35.35167 -34.56585 -32.91414 -30.72673 -29.96596 -28.43904 -26.62831 -24.04454 -22.35544 -22.07249 -20.83296 -20.07122 -18.15996 -17.04389 -16.76161 -16.25884 -16.17977 -15.03817 -14.67858 -14.63206 -14.44742 -14.02294 -13.39503 -13.31281 -12.64248 -12.32292 -12.27403 -11.71905 -11.67379 -11.35876 -11.13551 -10.95686 -10.82778 -10.80142 -10.45974 -10.41223 -10.36411 -9.65497 -9.27329 -9.00891 -8.65208 -8.33591 -7.40232 -5.98608 -4.00697 1.29063 1.48317 3.16029 3.31672 3.39041 3.43465 3.74698 3.76923 4.47202 4.71158 4.88120 5.01619 5.09158 5.14230 5.26669 5.37156 5.38300 5.44251 5.65300 5.68781 5.75172 5.95849 6.04173 6.21417 6.26044 6.34802 6.47510 6.48839 6.67679 6.78712 6.92813 7.10989 7.16640 7.56237 7.66416 7.70203 7.85155 8.02293 8.45375 9.07032 9.63353 11.12859 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.057078 B = 0.002825 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.441425 B = 9908.201221 C =10362.289821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.063 3.937 14 O -0.322 6.322 15 C 0.060 3.940 16 C -0.164 4.164 17 C -0.141 4.141 18 C -0.112 4.112 19 C -0.172 4.172 20 C 0.190 3.810 21 N -0.876 5.876 22 H 0.259 0.741 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.404 0.596 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -24.309 -0.007 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.012 4.012 14 O -0.236 6.236 15 C 0.011 3.989 16 C -0.183 4.183 17 C -0.161 4.161 18 C -0.130 4.130 19 C -0.196 4.196 20 C 0.086 3.914 21 N -0.417 5.417 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.233 0.767 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.993 -24.110 -0.006 24.438 hybrid contribution 0.466 1.037 0.000 1.137 sum 4.459 -23.073 -0.006 23.500 Atomic orbital electron populations 1.69979 1.06058 1.26437 1.51147 1.25041 0.94858 0.99283 0.95418 0.86546 0.80126 0.83832 0.77563 1.19752 1.21022 1.21026 1.21326 0.93084 0.91176 1.50178 0.92676 1.19117 0.94067 0.91446 0.97151 1.21614 0.99070 0.93645 1.00351 1.21589 0.97678 0.94244 1.01798 1.21632 0.99222 0.91300 1.03220 1.22934 0.92051 0.85021 1.01155 1.85957 1.36476 1.11785 1.89392 1.18495 0.91604 0.84082 1.04716 1.21116 0.93263 0.98713 1.05257 1.20723 0.99584 0.91763 1.04049 1.20767 0.92681 0.98613 1.00979 1.20409 0.95699 0.94083 1.09374 1.17175 0.84073 0.91401 0.98710 1.42314 1.02732 1.10936 1.85685 0.93094 0.96658 0.96663 0.93363 0.93361 0.92244 0.92237 0.91218 0.91211 0.92218 0.92223 0.85384 0.86220 0.86204 0.85860 0.76740 0.77666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.12 -1.90 5.21 -26.73 -0.14 -2.04 16 12 C -0.12 -1.61 5.58 -26.73 -0.15 -1.76 16 13 C 0.06 0.80 4.74 37.16 0.18 0.97 16 14 O -0.32 -4.27 9.38 -19.76 -0.19 -4.46 16 15 C 0.06 0.75 6.70 -39.08 -0.26 0.49 16 16 C -0.16 -1.90 9.04 -39.47 -0.36 -2.25 16 17 C -0.14 -1.43 10.04 -39.56 -0.40 -1.83 16 18 C -0.11 -1.04 10.04 -39.58 -0.40 -1.44 16 19 C -0.17 -1.66 9.89 -39.41 -0.39 -2.05 16 20 C 0.19 2.13 6.77 -83.56 -0.57 1.56 16 21 N -0.88 -7.85 9.09 32.51 0.30 -7.56 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 32 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 33 H 0.13 1.35 6.30 -52.48 -0.33 1.02 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.40 3.70 8.19 -40.82 -0.33 3.37 16 38 H 0.40 2.50 8.85 -40.82 -0.36 2.14 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -31.52 319.36 -8.54 -40.07 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.01 Total: 0.95 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -3.17 Total: -24.12 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 1.03 Total: -34.10 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.19 Total: -4.46 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.52 -8.54 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238644182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.977 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds