Wall clock time and date at job start Mon Mar 30 2020 07:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99991 * 2 1 4 4 H 1.48503 * 109.47043 * 269.99721 * 3 2 1 5 5 H 1.48504 * 109.46985 * 29.99398 * 3 2 1 6 6 H 1.48500 * 109.47312 * 149.99796 * 3 2 1 7 7 C 1.37884 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47271 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47277 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47277 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47413 * 179.97438 * 14 13 12 16 16 C 1.35633 * 125.46866 * 274.97811 * 15 14 13 17 17 C 1.39593 * 107.90582 * 180.02562 * 16 15 14 18 18 C 1.38435 * 106.93267 * 359.74058 * 17 16 15 19 19 C 1.41354 * 126.30588 * 180.25696 * 18 17 16 20 20 O 1.21443 * 119.99774 * 0.18552 * 19 18 17 21 21 N 1.34875 * 125.46708 * 95.00051 * 15 14 13 22 22 H 0.97001 * 125.64553 * 359.97438 * 21 15 14 23 23 H 0.96998 * 119.99940 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47415 * 59.99710 * 9 7 2 25 25 H 1.09003 * 109.46769 * 299.99527 * 9 7 2 26 26 H 1.09011 * 109.47139 * 59.99628 * 10 9 7 27 27 H 1.08995 * 109.47056 * 300.00127 * 10 9 7 28 28 H 1.09000 * 109.47495 * 60.00052 * 11 10 9 29 29 H 1.09004 * 109.47431 * 299.99976 * 11 10 9 30 30 H 1.08999 * 109.47534 * 59.99851 * 12 11 10 31 31 H 1.08994 * 109.47252 * 299.99910 * 12 11 10 32 32 H 1.08994 * 109.47167 * 59.99894 * 13 12 11 33 33 H 1.09003 * 109.46808 * 299.99839 * 13 12 11 34 34 H 1.09005 * 109.47244 * 59.99384 * 14 13 12 35 35 H 1.08995 * 109.47056 * 300.00303 * 14 13 12 36 36 H 1.08000 * 126.05131 * 0.03767 * 16 15 14 37 37 H 1.07998 * 126.53361 * 180.02562 * 17 16 15 38 38 H 1.07999 * 120.00205 * 180.18696 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0005 13 6 1.7096 -7.4750 0.0005 14 6 2.7038 -8.6380 0.0005 15 6 1.9504 -9.9431 0.0012 16 6 1.4743 -10.5764 1.1020 17 6 0.8409 -11.7477 0.6830 18 6 0.9472 -11.7922 -0.6966 19 6 0.4402 -12.8045 -1.5429 20 8 -0.1580 -13.7491 -1.0688 21 7 1.6417 -10.6690 -1.0928 22 1 1.8673 -10.4372 -2.0073 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8721 -3.6043 0.8906 27 1 2.8719 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8540 -5.0446 0.8914 30 1 3.1019 -6.0922 0.8900 31 1 3.1006 -6.0923 -0.8899 32 1 1.0826 -7.5326 -0.8892 33 1 1.0833 -7.5329 0.8908 34 1 3.3306 -8.5802 0.8905 35 1 3.3305 -8.5802 -0.8894 36 1 1.5683 -10.2349 2.1222 37 1 0.3560 -12.4775 1.3143 38 1 0.5847 -12.7379 -2.6111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238678481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:36 Heat of formation + Delta-G solvation = -52.805771 kcal Electronic energy + Delta-G solvation = -16551.063820 eV Core-core repulsion = 13778.063981 eV Total energy + Delta-G solvation = -2772.999839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38797 -39.59971 -37.49084 -35.58487 -33.95476 -32.20278 -31.49592 -29.35639 -27.07115 -24.93774 -23.57263 -21.95272 -21.72978 -21.50358 -20.79971 -18.65432 -18.39328 -16.72030 -16.53821 -16.40132 -15.95329 -15.73514 -15.13396 -14.76801 -14.71819 -14.43824 -14.09397 -13.88398 -13.63001 -13.48954 -13.24798 -12.80847 -12.68943 -12.45048 -12.16482 -12.12718 -11.77926 -11.49630 -11.27804 -11.23943 -10.93688 -10.84907 -10.55278 -10.01551 -9.10506 -8.19891 -6.31455 0.05051 1.39673 1.41357 1.52584 1.64760 2.19189 2.24633 2.41051 3.12717 3.56637 3.73351 4.04431 4.09837 4.22966 4.31883 4.38081 4.40323 4.63820 4.64942 4.76535 4.80790 4.94048 5.03126 5.05189 5.07370 5.13539 5.28299 5.32125 5.40043 5.46442 5.51062 5.62074 5.76544 5.81329 5.88621 5.90983 6.26752 6.51195 6.58918 6.86841 7.38022 8.91931 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.062876 B = 0.002480 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.216240 B =11289.278857 C =11432.785176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.114 4.114 12 C -0.109 4.109 13 C -0.108 4.108 14 C -0.054 4.054 15 C 0.086 3.914 16 C -0.234 4.234 17 C -0.114 4.114 18 C -0.136 4.136 19 C 0.410 3.590 20 O -0.516 6.516 21 N -0.510 5.510 22 H 0.435 0.565 23 H 0.263 0.737 24 H -0.012 1.012 25 H -0.013 1.013 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 -22.039 -3.129 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.152 4.152 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.092 4.092 15 C -0.035 4.035 16 C -0.257 4.257 17 C -0.140 4.140 18 C -0.245 4.245 19 C 0.275 3.725 20 O -0.394 6.394 21 N -0.107 5.107 22 H 0.276 0.724 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.005 0.995 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.326 -22.457 -3.086 23.534 hybrid contribution -0.073 1.256 -0.181 1.271 sum 6.253 -21.201 -3.268 22.344 Atomic orbital electron populations 1.70107 1.07894 1.27753 1.51870 1.26051 0.95814 1.03569 0.94801 0.85424 0.78667 0.78274 0.78548 1.19671 1.20789 1.18609 1.21770 0.93601 0.92553 1.50267 0.92114 1.19071 0.94673 0.93632 0.94423 1.21468 0.97896 0.93990 1.00415 1.21567 0.98379 0.94357 1.00898 1.21531 0.97659 0.92669 1.02784 1.21515 0.97835 0.92888 1.02341 1.20369 0.96614 0.86667 1.05510 1.20859 1.00815 0.95445 0.86419 1.21012 1.07629 0.97662 0.99413 1.21836 1.00113 0.98487 0.93610 1.20600 1.12232 0.95631 0.96078 1.22101 0.73824 0.80953 0.95586 1.90601 1.34894 1.32901 1.80964 1.41818 1.41952 1.17140 1.09821 0.72432 0.92805 0.99405 0.99460 0.93178 0.93059 0.93207 0.93304 0.91273 0.91136 0.92212 0.92105 0.88059 0.88796 0.83200 0.84193 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 2 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.02 4.97 29.85 0.15 1.17 16 10 C -0.10 -4.01 5.15 30.59 0.16 -3.85 16 11 C -0.11 -3.59 5.21 30.59 0.16 -3.43 16 12 C -0.11 -2.34 5.21 30.59 0.16 -2.18 16 13 C -0.11 -1.84 5.20 30.59 0.16 -1.68 16 14 C -0.05 -0.65 5.74 29.85 0.17 -0.48 16 15 C 0.09 1.28 6.36 41.49 0.26 1.54 16 16 C -0.23 -4.21 10.70 21.99 0.24 -3.98 16 17 C -0.11 -2.29 10.59 22.64 0.24 -2.05 16 18 C -0.14 -2.29 6.93 39.01 0.27 -2.02 16 19 C 0.41 6.38 11.52 68.59 0.79 7.17 16 20 O -0.52 -12.80 17.62 -3.54 -0.06 -12.87 16 21 N -0.51 -6.20 6.08 -176.11 -1.07 -7.27 16 22 H 0.43 2.25 8.96 -92.71 -0.83 1.42 16 23 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 24 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.14 0.80 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -73.36 326.90 4.82 -68.54 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 0.19 Total: 3.44 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 3.45 Total: -40.74 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.79 Total: -64.78 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.06 Total: -12.87 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -73.36 4.82 -68.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238678481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.732 kcal (2) G-P(sol) polarization free energy of solvation -73.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds