Wall clock time and date at job start Mon Mar 30 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.64162 * 2 1 4 4 C 1.55162 * 110.72015 * 123.13784 * 2 1 3 5 5 C 1.54914 * 101.57980 * 82.85943 * 4 2 1 6 6 N 1.47429 * 104.83185 * 37.00977 * 5 4 2 7 7 C 1.36931 * 125.65038 * 155.83276 * 6 5 4 8 8 H 1.08002 * 120.00438 * 180.02562 * 7 6 5 9 9 C 1.38817 * 119.99680 * 359.74937 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 119.99997 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00044 * 11 9 7 15 15 C 1.47023 * 108.70139 * 336.09863 * 6 5 4 16 16 H 1.09003 * 109.88407 * 120.24862 * 15 6 5 17 17 C 1.50699 * 109.88192 * 241.41097 * 15 6 5 18 18 C 1.38272 * 119.98961 * 218.54590 * 17 15 6 19 19 C 1.38218 * 120.05269 * 180.02562 * 18 17 15 20 20 C 1.38220 * 120.02363 * 0.02562 * 19 18 17 21 21 C 1.38437 * 119.97841 * 0.02562 * 20 19 18 22 22 F 1.35091 * 120.02704 * 180.02562 * 21 20 19 23 23 C 1.38172 * 119.98586 * 38.27423 * 17 15 6 24 24 H 1.09003 * 109.47331 * 298.31754 * 1 2 3 25 25 H 1.09003 * 109.47102 * 58.31326 * 1 2 3 26 26 H 1.08994 * 109.47356 * 178.31474 * 1 2 3 27 27 H 1.09000 * 111.00438 * 324.78856 * 4 2 1 28 28 H 1.08997 * 111.03970 * 200.94784 * 4 2 1 29 29 H 1.09000 * 110.36812 * 278.17395 * 5 4 2 30 30 H 1.08994 * 110.45660 * 155.89251 * 5 4 2 31 31 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 32 32 H 1.08005 * 119.96924 * 0.02562 * 18 17 15 33 33 H 1.07996 * 119.98651 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.00861 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01627 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 2.0125 -2.2497 0.6915 6 7 2.3715 -2.1545 -0.7353 7 6 2.8944 -3.1659 -1.4959 8 1 3.1251 -2.9948 -2.5370 9 6 3.1333 -4.4096 -0.9274 10 7 2.8522 -4.6181 0.3414 11 14 3.8538 -5.7871 -1.9631 12 1 4.0777 -5.3000 -3.3480 13 1 5.1462 -6.2235 -1.3763 14 1 2.9097 -6.9330 -1.9885 15 6 2.0811 -0.7917 -1.2045 16 1 2.9944 -0.3235 -1.5716 17 6 1.0482 -0.8364 -2.3009 18 6 1.1525 0.0168 -3.3839 19 6 0.2056 -0.0228 -4.3900 20 6 -0.8472 -0.9151 -4.3142 21 6 -0.9534 -1.7692 -3.2299 22 9 -1.9816 -2.6421 -3.1550 23 6 0.0003 -1.7339 -2.2262 24 1 -0.3634 0.4875 0.9047 25 1 -0.3633 0.5398 -0.8745 26 1 -0.3634 -1.0271 -0.0302 27 1 1.4396 -0.6626 2.0883 28 1 3.1060 -0.5051 1.4391 29 1 1.0038 -2.6474 0.8031 30 1 2.7281 -2.8782 1.2215 31 1 3.0188 -5.4873 0.7386 32 1 1.9747 0.7147 -3.4437 33 1 0.2884 0.6439 -5.2357 34 1 -1.5867 -0.9461 -5.1007 35 1 -0.0785 -2.4036 -1.3826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245409835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:08 Heat of formation + Delta-G solvation = 2.945098 kcal Electronic energy + Delta-G solvation = -18767.095340 eV Core-core repulsion = 15873.052735 eV Total energy + Delta-G solvation = -2894.042605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.40858 -39.41836 -37.07310 -33.10073 -31.17943 -30.19551 -30.02314 -27.59466 -25.92885 -24.02582 -22.20419 -21.85518 -19.98133 -18.92568 -17.07940 -16.53120 -15.76479 -15.67193 -15.14360 -14.90920 -14.28210 -14.02393 -13.48899 -13.39940 -12.91564 -12.54550 -12.28147 -11.92310 -11.58961 -11.49983 -11.21950 -11.18593 -10.89405 -10.85716 -10.71298 -10.10567 -10.06117 -9.81299 -9.71176 -9.48538 -8.69816 -8.31811 -8.17342 -6.89708 -5.67246 -3.09965 1.64956 1.75288 3.39206 3.45769 3.47500 4.08467 4.47608 4.72699 5.14168 5.18746 5.34346 5.42839 5.46147 5.57839 5.58662 5.64549 5.89526 5.93540 6.13099 6.19907 6.22906 6.33851 6.44350 6.50873 6.54077 6.63392 6.67196 6.69678 6.78681 6.92971 7.23274 7.42609 7.51282 7.64573 7.85023 8.33974 9.20135 9.80263 10.43609 11.35827 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.009920 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.068292 B = 2822.038705 C = 3604.568443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.143 4.143 5 C 0.150 3.850 6 N -0.589 5.589 7 C -0.219 4.219 8 H 0.076 0.924 9 C -0.008 4.008 10 N -0.920 5.920 11 Si 0.910 3.090 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.194 3.806 16 H 0.048 0.952 17 C -0.039 4.039 18 C -0.137 4.137 19 C -0.102 4.102 20 C -0.172 4.172 21 C 0.084 3.916 22 F -0.148 7.148 23 C -0.109 4.109 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.108 0.892 31 H 0.251 0.749 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 10.002 -3.599 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.182 4.182 5 C 0.026 3.974 6 N -0.312 5.312 7 C -0.347 4.347 8 H 0.094 0.906 9 C -0.203 4.203 10 N -0.568 5.568 11 Si 0.741 3.259 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.085 3.915 16 H 0.065 0.935 17 C -0.042 4.042 18 C -0.156 4.156 19 C -0.120 4.120 20 C -0.191 4.191 21 C 0.065 3.935 22 F -0.127 7.127 23 C -0.128 4.128 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.761 9.710 -3.557 11.384 hybrid contribution 0.076 -0.990 -0.694 1.211 sum -4.685 8.721 -4.251 10.773 Atomic orbital electron populations 1.21916 0.95271 1.02255 1.00322 1.22059 0.95531 0.97963 0.95663 0.91415 1.23084 0.99631 0.99437 0.96004 1.21987 0.99503 0.91224 0.84680 1.44602 1.73073 1.06199 1.07368 1.19065 1.33482 0.89211 0.92923 0.90565 1.24750 1.01658 0.97602 0.96333 1.69808 1.53887 1.22344 1.10762 0.86055 0.78424 0.82203 0.79214 1.20513 1.21729 1.21760 1.20065 0.92623 0.88436 0.90345 0.93473 1.20757 0.94834 0.92492 0.96125 1.21073 0.99625 1.00391 0.94492 1.20805 0.94195 0.98330 0.98698 1.20925 1.01096 0.98800 0.98303 1.17813 0.87251 0.91410 0.97071 1.91447 1.57050 1.67706 1.96495 1.21104 0.93238 0.99769 0.98724 0.93537 0.93130 0.91812 0.92280 0.92168 0.97046 0.87478 0.93781 0.86154 0.86017 0.85891 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 7.71 37.16 0.29 -1.95 16 2 C -0.09 -1.59 3.53 -88.79 -0.31 -1.90 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.63 6.57 -24.58 -0.16 -2.79 16 5 C 0.15 3.51 5.59 -2.52 -0.01 3.50 16 6 N -0.59 -14.24 2.37 -163.88 -0.39 -14.63 16 7 C -0.22 -5.90 9.80 -15.06 -0.15 -6.04 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -26.26 10.08 55.49 0.56 -25.70 16 11 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 C 0.19 3.84 3.27 -68.11 -0.22 3.61 16 16 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 17 C -0.04 -0.73 3.41 -104.63 -0.36 -1.09 16 18 C -0.14 -2.17 9.68 -39.58 -0.38 -2.55 16 19 C -0.10 -1.46 10.04 -39.60 -0.40 -1.86 16 20 C -0.17 -2.67 10.03 -39.51 -0.40 -3.06 16 21 C 0.08 1.53 7.30 -39.42 -0.29 1.24 16 22 F -0.15 -2.77 17.27 2.25 0.04 -2.74 16 23 C -0.11 -2.17 7.04 -39.51 -0.28 -2.44 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.77 7.19 -51.93 -0.37 0.40 16 26 H 0.06 1.14 5.46 -51.93 -0.28 0.86 16 27 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.01 0.29 7.77 -51.93 -0.40 -0.12 16 30 H 0.11 2.85 5.85 -51.93 -0.30 2.54 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.12 1.65 8.05 -52.48 -0.42 1.22 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.14 3.12 6.83 -52.49 -0.36 2.76 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -28.46 283.97 -7.94 -36.40 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.64 Total: 0.91 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.77 Total: -15.66 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.17 Total: -40.33 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.46 -7.94 -36.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245409835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.344 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds