Wall clock time and date at job start Mon Mar 30 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.64162 * 2 1 4 4 C 1.55162 * 110.72015 * 123.13784 * 2 1 3 5 5 C 1.54914 * 101.57980 * 82.85943 * 4 2 1 6 6 N 1.47429 * 104.83185 * 37.00977 * 5 4 2 7 7 C 1.36931 * 125.65038 * 155.83276 * 6 5 4 8 8 H 1.08002 * 120.00438 * 180.02562 * 7 6 5 9 9 C 1.38817 * 119.99680 * 359.74937 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 119.99997 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00044 * 11 9 7 15 15 C 1.47023 * 108.70139 * 336.09863 * 6 5 4 16 16 H 1.09003 * 109.88407 * 120.24862 * 15 6 5 17 17 C 1.50699 * 109.88192 * 241.41097 * 15 6 5 18 18 C 1.38272 * 119.98961 * 218.54590 * 17 15 6 19 19 C 1.38218 * 120.05269 * 180.02562 * 18 17 15 20 20 C 1.38220 * 120.02363 * 0.02562 * 19 18 17 21 21 C 1.38437 * 119.97841 * 0.02562 * 20 19 18 22 22 F 1.35091 * 120.02704 * 180.02562 * 21 20 19 23 23 C 1.38172 * 119.98586 * 38.27423 * 17 15 6 24 24 H 1.09003 * 109.47331 * 298.31754 * 1 2 3 25 25 H 1.09003 * 109.47102 * 58.31326 * 1 2 3 26 26 H 1.08994 * 109.47356 * 178.31474 * 1 2 3 27 27 H 1.09000 * 111.00438 * 324.78856 * 4 2 1 28 28 H 1.08997 * 111.03970 * 200.94784 * 4 2 1 29 29 H 1.09000 * 110.36812 * 278.17395 * 5 4 2 30 30 H 1.08994 * 110.45660 * 155.89251 * 5 4 2 31 31 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 32 32 H 1.08005 * 119.96924 * 0.02562 * 18 17 15 33 33 H 1.07996 * 119.98651 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.00861 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01627 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 2.0125 -2.2497 0.6915 6 7 2.3715 -2.1545 -0.7353 7 6 2.8944 -3.1659 -1.4959 8 1 3.1251 -2.9948 -2.5370 9 6 3.1333 -4.4096 -0.9274 10 7 2.8522 -4.6181 0.3414 11 14 3.8538 -5.7871 -1.9631 12 1 4.0777 -5.3000 -3.3480 13 1 5.1462 -6.2235 -1.3763 14 1 2.9097 -6.9330 -1.9885 15 6 2.0811 -0.7917 -1.2045 16 1 2.9944 -0.3235 -1.5716 17 6 1.0482 -0.8364 -2.3009 18 6 1.1525 0.0168 -3.3839 19 6 0.2056 -0.0228 -4.3900 20 6 -0.8472 -0.9151 -4.3142 21 6 -0.9534 -1.7692 -3.2299 22 9 -1.9816 -2.6421 -3.1550 23 6 0.0003 -1.7339 -2.2262 24 1 -0.3634 0.4875 0.9047 25 1 -0.3633 0.5398 -0.8745 26 1 -0.3634 -1.0271 -0.0302 27 1 1.4396 -0.6626 2.0883 28 1 3.1060 -0.5051 1.4391 29 1 1.0038 -2.6474 0.8031 30 1 2.7281 -2.8782 1.2215 31 1 3.0188 -5.4873 0.7386 32 1 1.9747 0.7147 -3.4437 33 1 0.2884 0.6439 -5.2357 34 1 -1.5867 -0.9461 -5.1007 35 1 -0.0785 -2.4036 -1.3826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245409835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:07 Heat of formation + Delta-G solvation = -11.352506 kcal Electronic energy + Delta-G solvation = -18767.715330 eV Core-core repulsion = 15873.052735 eV Total energy + Delta-G solvation = -2894.662596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.83601 -40.86888 -38.54147 -34.98522 -32.59588 -31.97898 -31.38513 -29.17418 -27.53145 -25.82592 -23.57984 -23.25084 -21.72840 -20.38016 -18.90059 -18.00293 -17.31116 -17.01559 -16.64478 -16.53969 -15.99061 -15.70065 -14.97009 -14.75970 -14.34708 -14.14082 -13.78112 -13.52233 -13.24635 -13.00752 -12.85075 -12.73896 -12.53008 -12.48595 -12.23408 -11.95695 -11.70567 -11.48675 -11.25039 -11.15845 -10.73211 -9.69204 -9.50602 -8.85315 -7.75511 -5.18656 0.32569 0.45035 1.42677 1.43978 1.53034 2.47904 2.77481 3.32641 3.39585 3.75269 3.84420 3.94486 4.04718 4.11396 4.21435 4.36447 4.52703 4.56723 4.71709 4.74372 4.81125 4.96179 5.06669 5.13788 5.21637 5.24859 5.28292 5.32849 5.45852 5.51303 5.57649 5.69742 5.82244 5.88952 6.10558 6.34291 7.13499 7.81486 8.44627 9.25703 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.009920 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.068292 B = 2822.038705 C = 3604.568443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 H 0.104 0.896 4 C -0.130 4.130 5 C 0.155 3.845 6 N -0.606 5.606 7 C -0.216 4.216 8 H 0.074 0.926 9 C -0.066 4.066 10 N -0.947 5.947 11 Si 0.967 3.033 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.299 1.299 15 C 0.185 3.815 16 H 0.053 0.947 17 C -0.054 4.054 18 C -0.132 4.132 19 C -0.086 4.086 20 C -0.163 4.163 21 C 0.060 3.940 22 F -0.159 7.159 23 C -0.130 4.130 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.066 0.934 29 H -0.020 1.020 30 H 0.071 0.929 31 H 0.244 0.756 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 12.896 -5.691 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.122 0.878 4 C -0.169 4.169 5 C 0.030 3.970 6 N -0.329 5.329 7 C -0.346 4.346 8 H 0.092 0.908 9 C -0.258 4.258 10 N -0.597 5.597 11 Si 0.796 3.204 12 H -0.193 1.193 13 H -0.216 1.216 14 H -0.226 1.226 15 C 0.079 3.921 16 H 0.070 0.930 17 C -0.057 4.057 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.181 4.181 21 C 0.041 3.959 22 F -0.138 7.138 23 C -0.149 4.149 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.085 0.915 29 H -0.002 1.002 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.171 0.829 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.728 12.643 -5.668 14.640 hybrid contribution 0.016 -1.825 -0.103 1.828 sum -4.712 10.818 -5.770 13.135 Atomic orbital electron populations 1.21829 0.94556 1.00733 1.01834 1.22097 0.96038 0.98917 0.93212 0.87830 1.22950 1.00741 0.95830 0.97362 1.21717 0.96477 0.94061 0.84762 1.44766 1.72940 1.07525 1.07661 1.19276 1.32153 0.90119 0.93005 0.90826 1.25469 1.03159 0.99790 0.97419 1.70055 1.55501 1.22148 1.12042 0.85164 0.77349 0.79452 0.78407 1.19348 1.21645 1.22628 1.20309 0.93363 0.86373 0.92104 0.92957 1.20584 0.94365 0.93717 0.97018 1.21407 1.00621 0.99691 0.93353 1.21306 0.92344 0.97620 0.99118 1.21313 1.01924 0.97423 0.97458 1.18085 0.87125 0.92546 0.98106 1.91413 1.57428 1.68312 1.96642 1.20823 0.95162 1.00430 0.98474 0.91277 0.92255 0.94890 0.90223 0.91499 1.00179 0.91137 0.94613 0.83323 0.81402 0.82930 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 7.71 71.98 0.56 -3.49 16 2 C -0.08 -2.69 3.53 -9.61 -0.03 -2.72 16 3 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 4 C -0.13 -4.72 6.57 31.99 0.21 -4.51 16 5 C 0.15 7.57 5.59 86.86 0.49 8.05 16 6 N -0.61 -30.07 2.37 -672.39 -1.59 -31.66 16 7 C -0.22 -11.98 9.80 84.04 0.82 -11.16 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 10 N -0.95 -56.93 10.08 21.65 0.22 -56.71 16 11 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 14 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 15 C 0.19 7.18 3.27 44.59 0.15 7.32 16 16 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 17 C -0.05 -1.96 3.41 -19.87 -0.07 -2.03 16 18 C -0.13 -3.67 9.68 22.27 0.22 -3.46 16 19 C -0.09 -2.04 10.04 22.26 0.22 -1.81 16 20 C -0.16 -4.48 10.03 22.31 0.22 -4.25 16 21 C 0.06 2.18 7.30 22.38 0.16 2.34 16 22 F -0.16 -6.06 17.27 44.97 0.78 -5.28 16 23 C -0.13 -5.23 7.04 22.31 0.16 -5.07 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.69 7.19 -2.39 -0.02 1.68 16 26 H 0.03 1.21 5.46 -2.39 -0.01 1.19 16 27 H 0.08 2.54 8.04 -2.39 -0.02 2.52 16 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 29 H -0.02 -1.06 7.77 -2.39 -0.02 -1.08 16 30 H 0.07 3.97 5.85 -2.39 -0.01 3.96 16 31 H 0.24 14.35 8.31 -92.70 -0.77 13.58 16 32 H 0.15 3.29 8.05 -2.91 -0.02 3.27 16 33 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 35 H 0.10 4.67 6.83 -2.91 -0.02 4.65 16 Total: -1.00 -65.65 283.97 6.08 -59.58 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.08 Total: 9.33 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 3.57 Total: -24.10 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -1.37 Total: -88.37 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.78 Total: -5.28 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -65.65 6.08 -59.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245409835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.223 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds