Wall clock time and date at job start Mon Mar 30 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09007 * 110.64528 * 2 1 4 4 C 1.55160 * 110.72286 * 236.85261 * 2 1 3 5 5 C 1.54908 * 101.58344 * 206.13587 * 4 2 1 6 6 N 1.47425 * 104.92961 * 36.95575 * 5 4 2 7 7 C 1.36933 * 125.65072 * 155.88958 * 6 5 4 8 8 H 1.08005 * 120.00164 * 180.02562 * 7 6 5 9 9 C 1.38816 * 119.99960 * 0.02638 * 7 6 5 10 10 N 1.31612 * 119.99651 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00031 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47326 * 89.99870 * 11 9 7 13 13 H 1.48499 * 109.47240 * 210.00098 * 11 9 7 14 14 H 1.48508 * 109.47142 * 329.99605 * 11 9 7 15 15 C 1.47192 * 108.61291 * 336.00613 * 6 5 4 16 16 H 1.08999 * 109.93981 * 120.37961 * 15 6 5 17 17 C 1.50700 * 109.92111 * 241.45212 * 15 6 5 18 18 C 1.38269 * 119.98639 * 217.86024 * 17 15 6 19 19 C 1.38220 * 120.04928 * 180.02562 * 18 17 15 20 20 C 1.38217 * 120.02870 * 0.02562 * 19 18 17 21 21 C 1.38436 * 119.97260 * 359.97438 * 20 19 18 22 22 F 1.35106 * 120.02711 * 180.02562 * 21 20 19 23 23 C 1.38170 * 119.98472 * 37.59446 * 17 15 6 24 24 H 1.09003 * 109.47762 * 181.68861 * 1 2 3 25 25 H 1.09000 * 109.47854 * 301.69206 * 1 2 3 26 26 H 1.08999 * 109.47204 * 61.69163 * 1 2 3 27 27 H 1.08995 * 110.99972 * 88.06218 * 4 2 1 28 28 H 1.09001 * 111.00142 * 324.21075 * 4 2 1 29 29 H 1.09002 * 110.36632 * 155.84970 * 5 4 2 30 30 H 1.08995 * 110.36781 * 278.06207 * 5 4 2 31 31 H 0.97008 * 120.00010 * 180.02562 * 10 9 7 32 32 H 1.08003 * 119.97252 * 0.02562 * 18 17 15 33 33 H 1.07998 * 119.98670 * 180.02562 * 19 18 17 34 34 H 1.08003 * 120.01637 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.01715 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7935 -1.2151 5 6 3.4632 -1.2487 -0.6895 6 7 3.2471 -1.5513 0.7371 7 6 4.0081 -2.3986 1.4974 8 1 3.7664 -2.5542 2.5385 9 6 5.0903 -3.0574 0.9301 10 7 5.3844 -2.8681 -0.3387 11 14 6.1280 -4.2138 1.9671 12 1 5.5680 -5.5869 1.8881 13 1 7.5230 -4.2181 1.4580 14 1 6.1180 -3.7556 3.3797 15 6 2.0759 -0.7931 1.2060 16 1 1.3129 -1.4784 1.5752 17 6 2.4845 0.1571 2.3019 18 6 1.6429 0.3749 3.3772 19 6 2.0161 1.2466 4.3828 20 6 3.2311 1.9021 4.3144 21 6 4.0745 1.6848 3.2384 22 9 5.2626 2.3245 3.1707 23 6 3.7024 0.8062 2.2346 24 1 -0.3635 -1.0272 0.0303 25 1 -0.3635 0.5399 0.8744 26 1 -0.3633 0.4873 -0.9048 27 1 2.1849 -0.1485 -2.0872 28 1 1.4451 -1.6513 -1.4401 29 1 3.7960 -2.1407 -1.2203 30 1 4.1935 -0.4473 -0.8009 31 1 6.1404 -3.3288 -0.7353 32 1 0.6931 -0.1365 3.4312 33 1 1.3581 1.4156 5.2224 34 1 3.5223 2.5835 5.1001 35 1 4.3616 0.6324 1.3971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245409836.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:12 Heat of formation + Delta-G solvation = -2.285769 kcal Electronic energy + Delta-G solvation = -18527.897136 eV Core-core repulsion = 15633.627704 eV Total energy + Delta-G solvation = -2894.269433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.40994 -39.17428 -37.08701 -33.15821 -31.27433 -30.33008 -29.95521 -28.01663 -25.64683 -23.62354 -22.32739 -21.60537 -20.12061 -19.21109 -17.23106 -16.54139 -15.74710 -15.61996 -15.11380 -14.92676 -14.47664 -13.76067 -13.37380 -13.10373 -12.81338 -12.72510 -12.53357 -11.95512 -11.74312 -11.55474 -11.27308 -11.11096 -11.01022 -10.83702 -10.70614 -10.11336 -10.04582 -9.98868 -9.72148 -9.47575 -8.71086 -8.35296 -8.18022 -6.89559 -5.66856 -3.09624 1.63931 1.74393 3.39670 3.45610 3.47189 4.07730 4.47452 4.71961 5.13151 5.16583 5.32717 5.42207 5.47179 5.53903 5.58177 5.65068 5.82614 5.94331 6.09473 6.14199 6.18786 6.31432 6.34281 6.44615 6.51310 6.62850 6.66376 6.69013 6.76167 6.93530 7.23835 7.42440 7.51187 7.64040 7.84785 8.33828 9.20207 9.80335 10.43931 11.36239 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.010081 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.166753 B = 2776.807344 C = 3779.601354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.141 4.141 5 C 0.149 3.851 6 N -0.590 5.590 7 C -0.219 4.219 8 H 0.076 0.924 9 C -0.008 4.008 10 N -0.920 5.920 11 Si 0.911 3.089 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.196 3.804 16 H 0.049 0.951 17 C -0.045 4.045 18 C -0.135 4.135 19 C -0.102 4.102 20 C -0.172 4.172 21 C 0.086 3.914 22 F -0.148 7.148 23 C -0.114 4.114 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.011 0.989 31 H 0.252 0.748 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 7.602 3.590 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.180 4.180 5 C 0.025 3.975 6 N -0.313 5.313 7 C -0.347 4.347 8 H 0.094 0.906 9 C -0.203 4.203 10 N -0.568 5.568 11 Si 0.741 3.259 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.087 3.913 16 H 0.067 0.933 17 C -0.048 4.048 18 C -0.153 4.153 19 C -0.120 4.120 20 C -0.191 4.191 21 C 0.067 3.933 22 F -0.127 7.127 23 C -0.132 4.132 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.126 7.455 3.544 11.583 hybrid contribution 0.945 -0.394 0.709 1.245 sum -7.181 7.061 4.253 10.932 Atomic orbital electron populations 1.21743 0.95335 1.01544 1.00890 1.22149 0.94758 0.98900 0.95627 0.91129 1.23094 1.00311 0.98658 0.95947 1.21986 0.90138 1.00669 0.84748 1.44630 1.30479 1.48879 1.07330 1.19013 1.06228 1.16521 0.92964 0.90631 1.24749 0.98659 1.00554 0.96364 1.69799 1.30080 1.46157 1.10791 0.86125 0.79675 0.80787 0.79287 1.21562 1.21645 1.20725 1.20113 0.90938 0.89975 0.90237 0.93306 1.20857 0.92728 0.94774 0.96419 1.21077 1.00157 0.99631 0.94483 1.20819 0.95653 0.96856 0.98681 1.20934 0.95823 1.03917 0.98428 1.17823 0.82296 0.96020 0.97149 1.91453 1.44433 1.80267 1.96511 1.21093 0.97869 0.95238 0.99046 0.92647 0.93133 0.93018 0.92414 0.92043 0.87442 0.97094 0.93724 0.86122 0.85964 0.85834 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.14 37.15 0.34 -1.54 16 2 C -0.10 -1.63 3.06 -88.79 -0.27 -1.90 16 3 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16 4 C -0.14 -2.61 6.53 -24.58 -0.16 -2.77 16 5 C 0.15 3.51 5.88 -2.53 -0.01 3.50 16 6 N -0.59 -14.38 2.36 -163.75 -0.39 -14.76 16 7 C -0.22 -5.94 9.79 -15.06 -0.15 -6.09 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 11 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 C 0.20 3.89 2.92 -68.01 -0.20 3.69 16 16 H 0.05 0.98 7.68 -51.93 -0.40 0.58 16 17 C -0.04 -0.85 4.56 -104.64 -0.48 -1.33 16 18 C -0.13 -2.15 9.67 -39.58 -0.38 -2.53 16 19 C -0.10 -1.47 10.04 -39.60 -0.40 -1.86 16 20 C -0.17 -2.68 10.03 -39.52 -0.40 -3.08 16 21 C 0.09 1.60 7.30 -39.42 -0.29 1.31 16 22 F -0.15 -2.80 17.27 2.25 0.04 -2.76 16 23 C -0.11 -2.30 9.14 -39.51 -0.36 -2.66 16 24 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 29 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.12 1.65 8.05 -52.48 -0.42 1.23 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.14 3.17 7.66 -52.49 -0.40 2.77 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -28.69 292.22 -8.12 -36.80 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.86 Total: 0.50 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.85 Total: -15.57 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.17 Total: -40.56 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.69 -8.12 -36.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245409836.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.518 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds