Wall clock time and date at job start Mon Mar 30 2020 06:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09007 * 110.64528 * 2 1 4 4 C 1.55160 * 110.72286 * 236.85261 * 2 1 3 5 5 C 1.54908 * 101.58344 * 206.13587 * 4 2 1 6 6 N 1.47425 * 104.92961 * 36.95575 * 5 4 2 7 7 C 1.36933 * 125.65072 * 155.88958 * 6 5 4 8 8 H 1.08005 * 120.00164 * 180.02562 * 7 6 5 9 9 C 1.38816 * 119.99960 * 0.02638 * 7 6 5 10 10 N 1.31612 * 119.99651 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00031 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47326 * 89.99870 * 11 9 7 13 13 H 1.48499 * 109.47240 * 210.00098 * 11 9 7 14 14 H 1.48508 * 109.47142 * 329.99605 * 11 9 7 15 15 C 1.47192 * 108.61291 * 336.00613 * 6 5 4 16 16 H 1.08999 * 109.93981 * 120.37961 * 15 6 5 17 17 C 1.50700 * 109.92111 * 241.45212 * 15 6 5 18 18 C 1.38269 * 119.98639 * 217.86024 * 17 15 6 19 19 C 1.38220 * 120.04928 * 180.02562 * 18 17 15 20 20 C 1.38217 * 120.02870 * 0.02562 * 19 18 17 21 21 C 1.38436 * 119.97260 * 359.97438 * 20 19 18 22 22 F 1.35106 * 120.02711 * 180.02562 * 21 20 19 23 23 C 1.38170 * 119.98472 * 37.59446 * 17 15 6 24 24 H 1.09003 * 109.47762 * 181.68861 * 1 2 3 25 25 H 1.09000 * 109.47854 * 301.69206 * 1 2 3 26 26 H 1.08999 * 109.47204 * 61.69163 * 1 2 3 27 27 H 1.08995 * 110.99972 * 88.06218 * 4 2 1 28 28 H 1.09001 * 111.00142 * 324.21075 * 4 2 1 29 29 H 1.09002 * 110.36632 * 155.84970 * 5 4 2 30 30 H 1.08995 * 110.36781 * 278.06207 * 5 4 2 31 31 H 0.97008 * 120.00010 * 180.02562 * 10 9 7 32 32 H 1.08003 * 119.97252 * 0.02562 * 18 17 15 33 33 H 1.07998 * 119.98670 * 180.02562 * 19 18 17 34 34 H 1.08003 * 120.01637 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.01715 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7935 -1.2151 5 6 3.4632 -1.2487 -0.6895 6 7 3.2471 -1.5513 0.7371 7 6 4.0081 -2.3986 1.4974 8 1 3.7664 -2.5542 2.5385 9 6 5.0903 -3.0574 0.9301 10 7 5.3844 -2.8681 -0.3387 11 14 6.1280 -4.2138 1.9671 12 1 5.5680 -5.5869 1.8881 13 1 7.5230 -4.2181 1.4580 14 1 6.1180 -3.7556 3.3797 15 6 2.0759 -0.7931 1.2060 16 1 1.3129 -1.4784 1.5752 17 6 2.4845 0.1571 2.3019 18 6 1.6429 0.3749 3.3772 19 6 2.0161 1.2466 4.3828 20 6 3.2311 1.9021 4.3144 21 6 4.0745 1.6848 3.2384 22 9 5.2626 2.3245 3.1707 23 6 3.7024 0.8062 2.2346 24 1 -0.3635 -1.0272 0.0303 25 1 -0.3635 0.5399 0.8744 26 1 -0.3633 0.4873 -0.9048 27 1 2.1849 -0.1485 -2.0872 28 1 1.4451 -1.6513 -1.4401 29 1 3.7960 -2.1407 -1.2203 30 1 4.1935 -0.4473 -0.8009 31 1 6.1404 -3.3288 -0.7353 32 1 0.6931 -0.1365 3.4312 33 1 1.3581 1.4156 5.2224 34 1 3.5223 2.5835 5.1001 35 1 4.3616 0.6324 1.3971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245409836.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:11 Heat of formation + Delta-G solvation = -16.605996 kcal Electronic energy + Delta-G solvation = -18528.518108 eV Core-core repulsion = 15633.627704 eV Total energy + Delta-G solvation = -2894.890404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.85917 -40.63643 -38.57840 -35.01564 -32.71266 -32.05266 -31.33947 -29.62606 -27.27802 -25.35309 -23.69109 -23.02759 -21.85021 -20.69279 -18.96431 -18.15766 -17.25656 -17.00023 -16.66504 -16.55554 -16.11749 -15.58987 -14.75675 -14.48766 -14.33993 -14.17387 -13.92409 -13.47949 -13.28758 -13.11024 -12.91606 -12.76235 -12.57882 -12.39809 -12.27731 -12.00743 -11.66793 -11.49719 -11.41505 -11.16454 -10.74606 -9.76044 -9.52981 -8.87152 -7.76263 -5.19830 0.29687 0.41486 1.42651 1.44073 1.51964 2.47313 2.74664 3.31350 3.36960 3.71980 3.83652 3.93618 4.03505 4.15234 4.22231 4.31662 4.49797 4.55514 4.70488 4.77726 4.78941 4.98071 5.07083 5.12854 5.22129 5.23018 5.25637 5.35107 5.45484 5.49275 5.57715 5.67360 5.80517 5.86500 6.08203 6.32358 7.12022 7.79900 8.43561 9.24926 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.010081 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.166753 B = 2776.807344 C = 3779.601354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.129 4.129 5 C 0.152 3.848 6 N -0.608 5.608 7 C -0.218 4.218 8 H 0.074 0.926 9 C -0.066 4.066 10 N -0.947 5.947 11 Si 0.968 3.032 12 H -0.282 1.282 13 H -0.297 1.297 14 H -0.276 1.276 15 C 0.190 3.810 16 H 0.055 0.945 17 C -0.062 4.062 18 C -0.129 4.129 19 C -0.085 4.085 20 C -0.162 4.162 21 C 0.064 3.936 22 F -0.158 7.158 23 C -0.141 4.141 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.073 0.927 30 H -0.022 1.022 31 H 0.245 0.755 32 H 0.151 0.849 33 H 0.171 0.829 34 H 0.155 0.845 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 8.503 5.830 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.167 4.167 5 C 0.027 3.973 6 N -0.331 5.331 7 C -0.348 4.348 8 H 0.091 0.909 9 C -0.258 4.258 10 N -0.598 5.598 11 Si 0.798 3.202 12 H -0.209 1.209 13 H -0.224 1.224 14 H -0.201 1.201 15 C 0.083 3.917 16 H 0.072 0.928 17 C -0.064 4.064 18 C -0.147 4.147 19 C -0.102 4.102 20 C -0.180 4.180 21 C 0.045 3.955 22 F -0.137 7.137 23 C -0.161 4.161 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.091 0.909 30 H -0.004 1.004 31 H 0.054 0.946 32 H 0.169 0.831 33 H 0.189 0.811 34 H 0.173 0.827 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.970 8.375 5.802 14.972 hybrid contribution 1.786 -0.602 0.071 1.886 sum -9.184 7.773 5.872 13.389 Atomic orbital electron populations 1.21689 0.91859 1.02289 1.02801 1.22128 0.97416 0.97742 0.93220 0.91551 1.22959 0.96955 0.99489 0.97318 1.21741 0.92609 0.98060 0.84929 1.44814 1.31386 1.49252 1.07614 1.19236 1.06317 1.16139 0.93063 0.90851 1.25489 1.00227 1.02645 0.97475 1.70049 1.30336 1.47286 1.12096 0.85215 0.77773 0.79237 0.78017 1.20872 1.22362 1.20145 1.20344 0.89265 0.90193 0.91899 0.92755 1.20733 0.93008 0.95261 0.97442 1.21415 1.00554 0.99512 0.93266 1.21351 0.95267 0.94549 0.99049 1.21342 0.95441 1.03710 0.97539 1.18087 0.82799 0.96479 0.98143 1.91419 1.45196 1.80442 1.96653 1.20847 0.98478 0.97729 0.99011 0.92439 0.91340 0.91061 0.90368 0.91340 0.90928 1.00403 0.94561 0.83141 0.81136 0.82702 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.14 71.98 0.66 -2.41 16 2 C -0.09 -2.83 3.06 -9.61 -0.03 -2.86 16 3 H 0.07 2.24 7.84 -2.38 -0.02 2.22 16 4 C -0.13 -4.75 6.53 31.99 0.21 -4.54 16 5 C 0.15 7.54 5.88 86.85 0.51 8.05 16 6 N -0.61 -30.62 2.36 -671.98 -1.58 -32.20 16 7 C -0.22 -12.20 9.79 84.04 0.82 -11.38 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 10 N -0.95 -57.24 10.09 21.65 0.22 -57.02 16 11 Si 0.97 46.97 29.55 68.60 2.03 48.99 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 C 0.19 7.45 2.92 44.56 0.13 7.58 16 16 H 0.05 2.08 7.68 -2.39 -0.02 2.06 16 17 C -0.06 -2.29 4.56 -19.87 -0.09 -2.38 16 18 C -0.13 -3.62 9.67 22.27 0.22 -3.40 16 19 C -0.08 -2.00 10.04 22.26 0.22 -1.78 16 20 C -0.16 -4.49 10.03 22.31 0.22 -4.27 16 21 C 0.06 2.35 7.30 22.38 0.16 2.51 16 22 F -0.16 -6.10 17.27 44.97 0.78 -5.32 16 23 C -0.14 -5.89 9.14 22.31 0.20 -5.68 16 24 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 29 H 0.07 4.12 5.87 -2.39 -0.01 4.11 16 30 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 31 H 0.24 14.46 8.31 -92.70 -0.77 13.69 16 32 H 0.15 3.32 8.05 -2.91 -0.02 3.30 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.09 4.70 7.66 -2.91 -0.02 4.68 16 Total: -1.00 -66.65 292.22 6.21 -60.44 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.07 Total: 9.01 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 3.71 Total: -23.90 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -1.37 Total: -89.22 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.78 Total: -5.32 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -66.65 6.21 -60.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245409836.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.833 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds