Wall clock time and date at job start Mon Mar 30 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99754 * 2 1 4 4 H 1.48495 * 109.47145 * 240.00062 * 3 2 1 5 5 H 1.48498 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46723 * 119.99670 * 3 2 1 7 7 C 1.37875 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99839 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.50601 * 59.92893 * 9 7 2 11 11 C 1.53126 * 109.50795 * 299.80375 * 9 7 2 12 12 C 1.53120 * 109.15777 * 182.40405 * 11 9 7 13 13 C 1.53033 * 109.28033 * 57.65965 * 12 11 9 14 14 N 1.46845 * 109.52281 * 300.81816 * 13 12 11 15 15 C 1.39845 * 110.99809 * 185.84341 * 14 13 12 16 16 C 1.38833 * 120.07730 * 175.79095 * 15 14 13 17 17 C 1.38149 * 119.95018 * 180.02562 * 16 15 14 18 18 C 1.38275 * 120.11230 * 0.02562 * 17 16 15 19 19 C 1.38290 * 120.15830 * 359.97438 * 18 17 16 20 20 C 1.38279 * 120.04921 * 0.02562 * 19 18 17 21 21 F 1.35100 * 120.05415 * 179.97438 * 20 19 18 22 22 C 1.46838 * 111.20160 * 61.74046 * 14 13 12 23 23 H 0.96994 * 120.00147 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.52309 * 302.30996 * 11 9 7 25 25 H 1.08997 * 109.51665 * 62.50539 * 11 9 7 26 26 H 1.09007 * 109.49442 * 177.59944 * 12 11 9 27 27 H 1.08998 * 109.50980 * 297.71390 * 12 11 9 28 28 H 1.08994 * 109.46362 * 180.79871 * 13 12 11 29 29 H 1.09003 * 109.46665 * 60.83215 * 13 12 11 30 30 H 1.07999 * 120.02686 * 0.03778 * 16 15 14 31 31 H 1.07997 * 119.94894 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.92038 * 179.70028 * 18 17 16 33 33 H 1.08007 * 119.97178 * 180.02562 * 19 18 17 34 34 H 1.08998 * 109.46594 * 58.27477 * 22 14 13 35 35 H 1.09006 * 109.46497 * 178.24704 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6230 -2.5566 -0.8895 11 6 0.3747 -2.5835 1.2522 12 6 -0.3408 -3.9370 1.2746 13 6 0.6991 -5.0590 1.2371 14 7 1.5114 -4.9347 0.0201 15 6 2.3844 -6.0192 -0.1127 16 6 3.1801 -6.1374 -1.2442 17 6 4.0412 -7.2100 -1.3728 18 6 4.1115 -8.1665 -0.3768 19 6 3.3210 -8.0533 0.7522 20 6 2.4568 -6.9823 0.8879 21 9 1.6841 -6.8719 1.9906 22 6 2.2450 -3.6629 -0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 0.9987 -2.4866 2.1406 25 1 -0.3633 -1.7816 1.2350 26 1 -0.9333 -4.0203 2.1858 27 1 -0.9946 -4.0176 0.4062 28 1 0.1925 -6.0241 1.2386 29 1 1.3438 -4.9862 2.1130 30 1 3.1262 -5.3912 -2.0231 31 1 4.6605 -7.3017 -2.2529 32 1 4.7822 -9.0063 -0.4828 33 1 3.3787 -8.8019 1.5286 34 1 2.8824 -3.5965 0.8805 35 1 2.8611 -3.6139 -0.8991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259205274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:03 Heat of formation + Delta-G solvation = -4.452721 kcal Electronic energy + Delta-G solvation = -18385.021412 eV Core-core repulsion = 15490.658013 eV Total energy + Delta-G solvation = -2894.363399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.97638 -39.50330 -37.48981 -33.90436 -32.00574 -30.51746 -29.94073 -28.63540 -25.15343 -23.65722 -22.76345 -21.40629 -21.17848 -18.89044 -17.51085 -16.77553 -16.02114 -15.77230 -15.66896 -14.79713 -14.40439 -14.08005 -13.99400 -13.43896 -13.03018 -12.71317 -12.51443 -12.46709 -12.09286 -11.92983 -11.41957 -11.15602 -10.95062 -10.76942 -10.53203 -10.12640 -9.85907 -9.75766 -9.37266 -8.95006 -8.78210 -8.69957 -8.31656 -7.40559 -6.01076 -4.08128 1.30661 1.40319 3.30668 3.35560 3.37710 3.70928 4.20597 4.42367 4.45069 4.84430 5.02395 5.28920 5.33071 5.46085 5.54663 5.73386 5.83846 5.98790 6.08643 6.18744 6.21432 6.30912 6.39537 6.43415 6.53686 6.64662 6.67281 6.82481 6.94947 7.12736 7.36030 7.45698 7.70432 7.75530 7.99686 8.10811 8.40503 8.94947 9.56482 11.04952 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032734 B = 0.006125 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.161442 B = 4570.187755 C = 5138.630297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.036 0.964 11 C -0.112 4.112 12 C -0.124 4.124 13 C 0.049 3.951 14 N -0.488 5.488 15 C 0.104 3.896 16 C -0.119 4.119 17 C -0.104 4.104 18 C -0.135 4.135 19 C -0.130 4.130 20 C 0.037 3.963 21 F -0.138 7.138 22 C 0.070 3.930 23 H 0.261 0.739 24 H 0.032 0.968 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.031 0.969 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -13.652 0.243 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.162 4.162 13 C -0.077 4.077 14 N -0.202 5.202 15 C 0.003 3.997 16 C -0.140 4.140 17 C -0.123 4.123 18 C -0.154 4.154 19 C -0.150 4.150 20 C 0.014 3.986 21 F -0.116 7.116 22 C -0.054 4.054 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.049 0.951 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.580 -13.411 -0.094 14.172 hybrid contribution 0.725 0.868 0.837 1.407 sum 5.306 -12.543 0.743 13.639 Atomic orbital electron populations 1.69879 1.05871 1.26581 1.50255 1.24926 0.94836 0.98993 0.94947 0.86658 0.79604 0.83132 0.78602 1.20244 1.21259 1.20331 1.21051 0.92816 0.90456 1.51318 0.92756 1.18714 0.92540 0.90088 0.95132 0.94574 1.21684 1.00107 0.94824 0.98428 1.21810 0.97387 0.96487 1.00521 1.22886 0.95746 0.99665 0.89438 1.59264 1.21209 1.02001 1.37677 1.19371 0.93353 0.93579 0.93367 1.20803 0.96895 0.99519 0.96750 1.21049 0.98323 0.93940 0.98965 1.20813 1.00585 1.00026 0.93998 1.20979 0.96985 0.97363 0.99629 1.17858 0.96464 0.99748 0.84493 1.91464 1.72869 1.95925 1.51379 1.22558 0.96460 0.86496 0.99860 0.92898 0.94933 0.88879 0.92990 0.92133 0.90623 0.93362 0.84630 0.85528 0.85657 0.85328 0.95092 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 11.36 55.43 0.63 -24.51 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.05 8.56 -34.44 -0.29 -14.35 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.35 2.26 -91.69 -0.21 1.14 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.68 5.03 -26.60 -0.13 -2.81 16 12 C -0.12 -2.51 6.09 -26.65 -0.16 -2.67 16 13 C 0.05 0.93 3.83 -3.84 -0.01 0.92 16 14 N -0.49 -9.54 4.69 -171.07 -0.80 -10.34 16 15 C 0.10 1.78 5.57 -83.67 -0.47 1.31 16 16 C -0.12 -1.76 9.18 -39.39 -0.36 -2.13 16 17 C -0.10 -1.24 10.04 -39.60 -0.40 -1.64 16 18 C -0.13 -1.53 10.04 -39.55 -0.40 -1.92 16 19 C -0.13 -1.67 10.02 -39.55 -0.40 -2.07 16 20 C 0.04 0.58 6.96 -39.26 -0.27 0.31 16 21 F -0.14 -2.29 12.24 2.25 0.03 -2.26 16 22 C 0.07 1.50 4.52 -3.83 -0.02 1.48 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.35 6.49 -51.93 -0.34 1.02 16 29 H 0.05 0.94 6.79 -51.93 -0.35 0.59 16 30 H 0.14 1.96 7.41 -52.49 -0.39 1.57 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.40 6.94 -51.93 -0.36 1.04 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -28.29 281.28 -8.83 -37.11 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.68 Total: 0.44 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -3.22 Total: -20.75 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.17 Total: -34.85 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.03 Total: -2.26 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.29 -8.83 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259205274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.661 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds