Wall clock time and date at job start Mon Mar 30 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99609 * 2 1 4 4 H 1.48496 * 109.47452 * 264.80578 * 3 2 1 5 5 H 1.48499 * 109.47493 * 24.80503 * 3 2 1 6 6 H 1.48503 * 109.47293 * 144.80356 * 3 2 1 7 7 C 1.37875 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99791 * 4.63453 * 7 2 1 9 9 C 1.50696 * 119.99764 * 184.64171 * 7 2 1 10 10 H 1.08995 * 109.45691 * 334.41399 * 9 7 2 11 11 C 1.53043 * 109.46596 * 94.38631 * 9 7 2 12 12 C 1.53201 * 109.30205 * 179.19224 * 11 9 7 13 13 C 1.53119 * 109.11546 * 302.37121 * 12 11 9 14 14 C 1.53037 * 109.31087 * 57.63536 * 13 12 11 15 15 N 1.46845 * 109.52761 * 300.80062 * 14 13 12 16 16 C 1.39841 * 111.00241 * 185.84132 * 15 14 13 17 17 C 1.38831 * 120.07786 * 107.97804 * 16 15 14 18 18 C 1.38161 * 119.94620 * 179.72339 * 17 16 15 19 19 C 1.38280 * 120.10731 * 0.57523 * 18 17 16 20 20 C 1.38281 * 120.16519 * 359.69874 * 19 18 17 21 21 C 1.38284 * 120.04697 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.05365 * 179.97438 * 21 20 19 23 23 H 0.96999 * 120.00456 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.50276 * 299.13818 * 11 9 7 25 25 H 1.09008 * 109.49709 * 59.21223 * 11 9 7 26 26 H 1.08997 * 109.57586 * 182.45970 * 12 11 9 27 27 H 1.09004 * 109.51296 * 62.24358 * 12 11 9 28 28 H 1.09001 * 109.50242 * 297.67402 * 13 12 11 29 29 H 1.09003 * 109.50124 * 177.59768 * 13 12 11 30 30 H 1.08998 * 109.46491 * 60.81897 * 14 13 12 31 31 H 1.09003 * 109.46440 * 180.78179 * 14 13 12 32 32 H 1.07999 * 120.02977 * 359.97438 * 17 16 15 33 33 H 1.07990 * 119.94629 * 180.29352 * 18 17 16 34 34 H 1.08003 * 119.91206 * 179.72205 * 19 18 17 35 35 H 1.07996 * 119.97650 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9832 -1.3943 5 1 1.3959 2.6819 0.5874 6 1 3.4874 1.4745 0.8070 7 6 2.0046 -1.1940 -0.0005 8 1 1.4673 -2.1278 -0.0765 9 6 3.5079 -1.1961 0.1051 10 1 3.8997 -0.2522 -0.2739 11 6 3.9160 -1.3659 1.5703 12 6 5.4445 -1.3877 1.6710 13 6 5.9884 -2.5217 0.7976 14 6 5.5203 -2.3183 -0.6452 15 7 4.0525 -2.3056 -0.6878 16 6 3.5898 -2.2538 -2.0065 17 6 3.0010 -3.3717 -2.5817 18 6 2.5396 -3.3157 -3.8828 19 6 2.6741 -2.1516 -4.6169 20 6 3.2650 -1.0372 -4.0504 21 6 3.7240 -1.0841 -2.7468 22 9 4.3018 0.0045 -2.1932 23 1 -0.4851 0.8400 -0.0004 24 1 3.5247 -0.5339 2.1558 25 1 3.5121 -2.3028 1.9542 26 1 5.7399 -1.5522 2.7072 27 1 5.8459 -0.4357 1.3235 28 1 5.6178 -3.4770 1.1692 29 1 7.0779 -2.5161 0.8309 30 1 5.9027 -1.3693 -1.0208 31 1 5.8946 -3.1319 -1.2666 32 1 2.9000 -4.2832 -2.0113 33 1 2.0774 -4.1838 -4.3287 34 1 2.3164 -2.1127 -5.6353 35 1 3.3681 -0.1295 -4.6264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259391789.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:45 Heat of formation + Delta-G solvation = -13.613671 kcal Electronic energy + Delta-G solvation = -19220.358007 eV Core-core repulsion = 16325.597360 eV Total energy + Delta-G solvation = -2894.760647 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.34487 -39.18418 -37.32694 -33.09002 -32.73737 -30.26144 -30.05565 -28.49794 -25.42822 -23.28099 -22.18148 -21.58569 -20.79527 -19.04585 -17.17961 -16.83182 -16.13698 -15.62491 -14.98344 -14.65108 -14.29937 -13.90796 -13.51769 -13.38799 -12.98033 -12.81825 -12.57806 -12.40272 -12.32302 -11.57994 -11.34267 -11.00683 -10.94992 -10.83466 -10.66154 -10.27016 -9.94880 -9.84126 -9.65245 -9.01897 -8.56796 -8.35002 -7.95685 -7.47551 -6.09214 -4.08025 1.76180 1.82149 3.29919 3.36637 3.41196 4.15557 4.41324 4.54822 4.90904 5.21555 5.28836 5.38601 5.41506 5.48003 5.63345 5.74037 5.90500 5.99329 6.04775 6.10770 6.24207 6.32992 6.46525 6.54397 6.55382 6.59700 6.74339 6.80199 6.88949 6.90993 6.95396 7.25938 7.38425 7.66379 7.85857 8.22777 8.60916 9.01712 9.55135 11.03526 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.013824 C = 0.009735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.941463 B = 2024.960324 C = 2875.421907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.080 3.920 3 Si 0.863 3.137 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.080 0.920 9 C 0.172 3.828 10 H 0.027 0.973 11 C -0.104 4.104 12 C -0.127 4.127 13 C -0.109 4.109 14 C 0.055 3.945 15 N -0.497 5.497 16 C 0.122 3.878 17 C -0.078 4.078 18 C -0.128 4.128 19 C -0.113 4.113 20 C -0.153 4.153 21 C 0.071 3.929 22 F -0.140 7.140 23 H 0.264 0.736 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.452 -4.437 -5.118 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.691 3.309 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.098 0.902 9 C 0.067 3.933 10 H 0.044 0.956 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.147 4.147 14 C -0.072 4.072 15 N -0.219 5.219 16 C 0.026 3.974 17 C -0.097 4.097 18 C -0.146 4.146 19 C -0.132 4.132 20 C -0.172 4.172 21 C 0.050 3.950 22 F -0.119 7.119 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.160 -4.704 -4.838 11.377 hybrid contribution 0.567 2.074 -0.216 2.161 sum 9.726 -2.629 -5.055 11.272 Atomic orbital electron populations 1.69884 1.06109 1.26871 1.50201 1.24915 0.94612 0.98496 0.94292 0.87084 0.80272 0.84330 0.79255 1.19759 1.21677 1.18943 1.20854 0.88245 0.94730 1.50264 0.90197 1.20024 0.96037 0.87726 0.89477 0.95560 1.21796 0.92093 1.01695 0.98679 1.21739 0.98392 0.97822 0.98563 1.21505 0.98671 0.99690 0.94788 1.22092 0.88197 0.99686 0.97200 1.59840 1.06157 1.48938 1.06921 1.18707 0.97747 0.91509 0.89388 1.20864 0.96549 0.97972 0.94315 1.21001 1.00968 0.98084 0.94580 1.20774 0.99893 0.92694 0.99792 1.20955 1.02169 0.99895 0.94188 1.18564 0.99382 0.84443 0.92626 1.91381 1.82069 1.53076 1.85359 0.92633 0.92504 0.91817 0.92867 0.93184 0.91294 0.92505 0.95215 0.91749 0.85119 0.85956 0.86005 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 3 Si 0.86 22.37 26.28 -169.99 -4.47 17.91 16 4 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.26 -6.61 6.84 56.52 0.39 -6.23 16 7 C -0.50 -14.13 7.90 -34.44 -0.27 -14.40 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.17 4.15 0.99 -68.87 -0.07 4.08 16 10 H 0.03 0.68 3.02 -51.93 -0.16 0.52 16 11 C -0.10 -2.25 5.36 -26.61 -0.14 -2.40 16 12 C -0.13 -2.25 6.01 -26.57 -0.16 -2.41 16 13 C -0.11 -1.73 6.09 -26.65 -0.16 -1.90 16 14 C 0.05 0.99 5.19 -3.83 -0.02 0.97 16 15 N -0.50 -10.60 4.46 -164.84 -0.73 -11.33 16 16 C 0.12 2.55 3.65 -83.67 -0.31 2.25 16 17 C -0.08 -1.43 9.97 -39.39 -0.39 -1.82 16 18 C -0.13 -2.01 10.04 -39.59 -0.40 -2.41 16 19 C -0.11 -1.79 10.04 -39.55 -0.40 -2.18 16 20 C -0.15 -2.78 10.02 -39.55 -0.40 -3.17 16 21 C 0.07 1.52 6.64 -39.25 -0.26 1.26 16 22 F -0.14 -3.20 12.89 2.25 0.03 -3.17 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.06 1.38 8.14 -51.92 -0.42 0.96 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.56 7.14 -51.93 -0.37 0.19 16 31 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 32 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 35 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 281.72 15.07 4.25 4.25 Total: -1.00 -30.97 281.72 -7.97 -38.95 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.75 Total: -0.05 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -3.07 Total: -19.92 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.04 Total: -37.96 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.03 Total: -3.17 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.47 Total: 17.91 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.97 -7.97 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259391789.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.331 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds