Wall clock time and date at job start Mon Mar 30 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99609 * 2 1 4 4 H 1.48496 * 109.47452 * 264.80578 * 3 2 1 5 5 H 1.48499 * 109.47493 * 24.80503 * 3 2 1 6 6 H 1.48503 * 109.47293 * 144.80356 * 3 2 1 7 7 C 1.37875 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99791 * 4.63453 * 7 2 1 9 9 C 1.50696 * 119.99764 * 184.64171 * 7 2 1 10 10 H 1.08995 * 109.45691 * 334.41399 * 9 7 2 11 11 C 1.53043 * 109.46596 * 94.38631 * 9 7 2 12 12 C 1.53201 * 109.30205 * 179.19224 * 11 9 7 13 13 C 1.53119 * 109.11546 * 302.37121 * 12 11 9 14 14 C 1.53037 * 109.31087 * 57.63536 * 13 12 11 15 15 N 1.46845 * 109.52761 * 300.80062 * 14 13 12 16 16 C 1.39841 * 111.00241 * 185.84132 * 15 14 13 17 17 C 1.38831 * 120.07786 * 107.97804 * 16 15 14 18 18 C 1.38161 * 119.94620 * 179.72339 * 17 16 15 19 19 C 1.38280 * 120.10731 * 0.57523 * 18 17 16 20 20 C 1.38281 * 120.16519 * 359.69874 * 19 18 17 21 21 C 1.38284 * 120.04697 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.05365 * 179.97438 * 21 20 19 23 23 H 0.96999 * 120.00456 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.50276 * 299.13818 * 11 9 7 25 25 H 1.09008 * 109.49709 * 59.21223 * 11 9 7 26 26 H 1.08997 * 109.57586 * 182.45970 * 12 11 9 27 27 H 1.09004 * 109.51296 * 62.24358 * 12 11 9 28 28 H 1.09001 * 109.50242 * 297.67402 * 13 12 11 29 29 H 1.09003 * 109.50124 * 177.59768 * 13 12 11 30 30 H 1.08998 * 109.46491 * 60.81897 * 14 13 12 31 31 H 1.09003 * 109.46440 * 180.78179 * 14 13 12 32 32 H 1.07999 * 120.02977 * 359.97438 * 17 16 15 33 33 H 1.07990 * 119.94629 * 180.29352 * 18 17 16 34 34 H 1.08003 * 119.91206 * 179.72205 * 19 18 17 35 35 H 1.07996 * 119.97650 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9832 -1.3943 5 1 1.3959 2.6819 0.5874 6 1 3.4874 1.4745 0.8070 7 6 2.0046 -1.1940 -0.0005 8 1 1.4673 -2.1278 -0.0765 9 6 3.5079 -1.1961 0.1051 10 1 3.8997 -0.2522 -0.2739 11 6 3.9160 -1.3659 1.5703 12 6 5.4445 -1.3877 1.6710 13 6 5.9884 -2.5217 0.7976 14 6 5.5203 -2.3183 -0.6452 15 7 4.0525 -2.3056 -0.6878 16 6 3.5898 -2.2538 -2.0065 17 6 3.0010 -3.3717 -2.5817 18 6 2.5396 -3.3157 -3.8828 19 6 2.6741 -2.1516 -4.6169 20 6 3.2650 -1.0372 -4.0504 21 6 3.7240 -1.0841 -2.7468 22 9 4.3018 0.0045 -2.1932 23 1 -0.4851 0.8400 -0.0004 24 1 3.5247 -0.5339 2.1558 25 1 3.5121 -2.3028 1.9542 26 1 5.7399 -1.5522 2.7072 27 1 5.8459 -0.4357 1.3235 28 1 5.6178 -3.4770 1.1692 29 1 7.0779 -2.5161 0.8309 30 1 5.9027 -1.3693 -1.0208 31 1 5.8946 -3.1319 -1.2666 32 1 2.9000 -4.2832 -2.0113 33 1 2.0774 -4.1838 -4.3287 34 1 2.3164 -2.1127 -5.6353 35 1 3.3681 -0.1295 -4.6264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259391789.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:44 Heat of formation + Delta-G solvation = -32.692268 kcal Electronic energy + Delta-G solvation = -19221.185317 eV Core-core repulsion = 16325.597360 eV Total energy + Delta-G solvation = -2895.587957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.95795 -40.70534 -38.77629 -34.89492 -34.49870 -32.05857 -31.44240 -29.94070 -27.33038 -24.80387 -23.62700 -23.22450 -22.31736 -20.63736 -19.12483 -18.50250 -17.67450 -17.18598 -16.60567 -16.37986 -15.85196 -15.61795 -15.01192 -14.86138 -14.65434 -14.36687 -14.26724 -14.06298 -13.95363 -13.10864 -12.81633 -12.72492 -12.63613 -12.53756 -12.18947 -11.95521 -11.74285 -11.56684 -11.29366 -10.90824 -10.74728 -9.76793 -9.44233 -9.09695 -8.34504 -6.34386 0.34149 0.42647 1.20929 1.25181 1.32470 2.25131 2.76414 2.90313 3.17073 3.46957 3.92643 4.00394 4.07648 4.19844 4.22600 4.45959 4.47749 4.53991 4.62856 4.68500 4.77282 4.84407 4.97593 5.09847 5.15531 5.17222 5.21872 5.31579 5.34495 5.49497 5.52548 5.56507 5.69363 5.99298 6.00758 6.52564 6.60300 6.76950 7.31637 8.82322 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.013824 C = 0.009735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.941463 B = 2024.960324 C = 2875.421907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.031 3.969 3 Si 0.914 3.086 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.490 4.490 8 H 0.038 0.962 9 C 0.175 3.825 10 H 0.015 0.985 11 C -0.106 4.106 12 C -0.122 4.122 13 C -0.103 4.103 14 C 0.052 3.948 15 N -0.502 5.502 16 C 0.090 3.910 17 C -0.093 4.093 18 C -0.117 4.117 19 C -0.105 4.105 20 C -0.162 4.162 21 C 0.032 3.968 22 F -0.158 7.158 23 H 0.265 0.735 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.018 0.982 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.085 -5.249 -6.089 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.168 4.168 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.069 3.931 10 H 0.032 0.968 11 C -0.145 4.145 12 C -0.159 4.159 13 C -0.141 4.141 14 C -0.074 4.074 15 N -0.224 5.224 16 C -0.005 4.005 17 C -0.112 4.112 18 C -0.136 4.136 19 C -0.123 4.123 20 C -0.182 4.182 21 C 0.010 3.990 22 F -0.137 7.137 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.181 0.819 34 H 0.182 0.818 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.820 -5.528 -5.809 13.468 hybrid contribution 0.025 2.181 -0.019 2.182 sum 10.845 -3.347 -5.829 12.759 Atomic orbital electron populations 1.70002 1.07564 1.27602 1.52753 1.25529 0.95155 1.01475 0.94610 0.86259 0.79649 0.80954 0.79180 1.20032 1.21139 1.17626 1.20974 0.90571 0.92804 1.48537 0.94333 1.19848 0.93325 0.88488 0.91407 0.96762 1.21715 0.95542 1.00678 0.96563 1.21692 0.94848 0.98542 1.00861 1.21529 1.00780 0.99012 0.92742 1.22246 0.86081 0.99890 0.99155 1.59749 1.08184 1.47124 1.07312 1.19029 0.99390 0.92596 0.89483 1.21149 0.96611 0.97648 0.95754 1.21499 0.99167 0.99509 0.93405 1.21301 0.97967 0.91508 1.01500 1.21325 1.01906 1.01603 0.93325 1.18962 1.01491 0.84343 0.94171 1.91317 1.82637 1.53886 1.85842 0.92619 0.94052 0.92448 0.89971 0.93555 0.90770 0.88889 0.96366 0.89700 0.84372 0.81929 0.81795 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 2 C 0.03 1.83 5.47 84.65 0.46 2.29 16 3 Si 0.91 47.09 26.28 68.60 1.80 48.89 16 4 H -0.27 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.25 -12.33 6.84 99.48 0.68 -11.65 16 7 C -0.49 -28.43 7.90 25.60 0.20 -28.23 16 8 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 9 C 0.18 8.53 0.99 44.19 0.04 8.57 16 10 H 0.01 0.76 3.02 -2.39 -0.01 0.75 16 11 C -0.11 -4.58 5.36 30.68 0.16 -4.42 16 12 C -0.12 -4.03 6.01 30.70 0.18 -3.85 16 13 C -0.10 -2.99 6.09 30.65 0.19 -2.80 16 14 C 0.05 1.81 5.19 86.33 0.45 2.25 16 15 N -0.50 -21.36 4.46 -675.44 -3.01 -24.37 16 16 C 0.09 3.77 3.65 38.21 0.14 3.91 16 17 C -0.09 -3.29 9.97 22.39 0.22 -3.07 16 18 C -0.12 -3.37 10.04 22.26 0.22 -3.15 16 19 C -0.10 -2.99 10.04 22.29 0.22 -2.76 16 20 C -0.16 -5.70 10.02 22.29 0.22 -5.47 16 21 C 0.03 1.34 6.64 22.48 0.15 1.49 16 22 F -0.16 -7.29 12.89 44.97 0.58 -6.71 16 23 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.02 0.67 7.14 -2.39 -0.02 0.65 16 31 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 32 H 0.14 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.16 3.32 8.06 -2.92 -0.02 3.29 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -69.87 281.72 3.59 -66.27 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.05 Total: 10.29 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 2.88 Total: -35.24 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.71 Total: -83.51 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.58 Total: -6.71 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.80 Total: 48.89 kcal Total: -69.87 3.59 -66.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259391789.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.580 kcal (2) G-P(sol) polarization free energy of solvation -69.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds