Wall clock time and date at job start Mon Mar 30 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48502 * 109.47162 * 270.00313 * 3 2 1 5 5 H 1.48492 * 109.47316 * 30.00226 * 3 2 1 6 6 H 1.48497 * 109.46881 * 150.00736 * 3 2 1 7 7 C 1.37870 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99897 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00232 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.45897 * 54.56291 * 9 7 2 11 11 C 1.53039 * 109.46022 * 294.58565 * 9 7 2 12 12 C 1.53121 * 109.27546 * 180.81282 * 11 9 7 13 13 C 1.53118 * 109.15852 * 57.65557 * 12 11 9 14 14 C 1.53041 * 109.28128 * 302.34487 * 13 12 11 15 15 N 1.46840 * 109.52280 * 59.17949 * 14 13 12 16 16 C 1.39841 * 110.99971 * 174.16759 * 15 14 13 17 17 C 1.38838 * 120.07605 * 232.27235 * 16 15 14 18 18 C 1.38158 * 119.94261 * 179.69847 * 17 16 15 19 19 C 1.38265 * 120.11608 * 0.57075 * 18 17 16 20 20 C 1.38292 * 120.15913 * 359.72707 * 19 18 17 21 21 C 1.38274 * 120.04962 * 359.97270 * 20 19 18 22 22 F 1.35105 * 120.05461 * 180.02562 * 21 20 19 23 23 H 0.97000 * 119.99694 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.50628 * 60.87486 * 11 9 7 25 25 H 1.09001 * 109.53168 * 300.77016 * 11 9 7 26 26 H 1.08994 * 109.52161 * 297.75184 * 12 11 9 27 27 H 1.08997 * 109.57457 * 177.58673 * 12 11 9 28 28 H 1.09003 * 109.50629 * 62.28560 * 13 12 11 29 29 H 1.09005 * 109.50373 * 182.40121 * 13 12 11 30 30 H 1.08997 * 109.46586 * 179.20034 * 14 13 12 31 31 H 1.09006 * 109.45400 * 299.16538 * 14 13 12 32 32 H 1.07997 * 120.02731 * 359.97117 * 17 16 15 33 33 H 1.08006 * 119.93900 * 180.31973 * 18 17 16 34 34 H 1.07999 * 119.91965 * 179.74294 * 19 18 17 35 35 H 1.08000 * 119.97341 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8750 -0.5983 0.8362 11 6 4.0209 -0.5934 -1.3133 12 6 5.5520 -0.6141 -1.3180 13 6 6.0356 -2.0549 -1.1313 14 6 5.4678 -2.6132 0.1756 15 7 4.0007 -2.5725 0.1302 16 6 3.4470 -3.1958 1.2529 17 6 2.4878 -4.1872 1.0962 18 6 1.9473 -4.8056 2.2071 19 6 2.3512 -4.4305 3.4751 20 6 3.3018 -3.4392 3.6367 21 6 3.8518 -2.8202 2.5294 22 9 4.7809 -1.8521 2.6871 23 1 -0.4850 0.8401 0.0004 24 1 3.6707 0.4349 -1.4031 25 1 3.6465 -1.1800 -2.1522 26 1 5.9271 0.0045 -0.5028 27 1 5.9195 -0.2268 -2.2682 28 1 5.6928 -2.6650 -1.9670 29 1 7.1248 -2.0708 -1.0911 30 1 5.7987 -3.6437 0.3045 31 1 5.8222 -2.0108 1.0121 32 1 2.1678 -4.4779 0.1065 33 1 1.2048 -5.5804 2.0849 34 1 1.9235 -4.9131 4.3415 35 1 3.6148 -3.1483 4.6286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259391793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:48 Heat of formation + Delta-G solvation = -10.873239 kcal Electronic energy + Delta-G solvation = -19058.333932 eV Core-core repulsion = 16163.692118 eV Total energy + Delta-G solvation = -2894.641813 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.45020 -39.26158 -37.38031 -33.13091 -32.83023 -30.29662 -30.09726 -28.53590 -25.40683 -23.29228 -22.23906 -21.77919 -20.75516 -19.10333 -17.22275 -16.72430 -16.21310 -15.74811 -15.07290 -14.74499 -14.32183 -13.89984 -13.56825 -13.49300 -12.94888 -12.85773 -12.72737 -12.67734 -12.13559 -11.56006 -11.43842 -11.18549 -10.93106 -10.88067 -10.52492 -10.32416 -10.03766 -9.96241 -9.44169 -9.04181 -8.56814 -8.32360 -8.03763 -7.56215 -6.08544 -4.06994 1.69784 1.79007 3.24971 3.35923 3.37890 4.11640 4.38842 4.53601 4.80615 5.20444 5.22991 5.37382 5.38982 5.46463 5.59709 5.69900 5.88156 6.01351 6.03167 6.10765 6.19807 6.30756 6.43815 6.50633 6.52419 6.59866 6.66805 6.74304 6.79171 6.87852 6.93979 7.24044 7.36549 7.58898 7.80079 8.19129 8.58880 8.98851 9.53323 11.03995 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018422 B = 0.011665 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.556427 B = 2399.798090 C = 3163.311592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.086 0.914 9 C 0.189 3.811 10 H 0.010 0.990 11 C -0.115 4.115 12 C -0.127 4.127 13 C -0.108 4.108 14 C 0.042 3.958 15 N -0.492 5.492 16 C 0.115 3.885 17 C -0.064 4.064 18 C -0.126 4.126 19 C -0.112 4.112 20 C -0.153 4.153 21 C 0.059 3.941 22 F -0.143 7.143 23 H 0.264 0.736 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.658 -6.883 2.973 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.546 4.546 8 H 0.104 0.896 9 C 0.084 3.916 10 H 0.027 0.973 11 C -0.153 4.153 12 C -0.165 4.165 13 C -0.145 4.145 14 C -0.085 4.085 15 N -0.213 5.213 16 C 0.020 3.980 17 C -0.083 4.083 18 C -0.145 4.145 19 C -0.131 4.131 20 C -0.172 4.172 21 C 0.038 3.962 22 F -0.122 7.122 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.391 -6.954 2.530 11.188 hybrid contribution 0.705 1.765 0.730 2.036 sum 9.096 -5.189 3.260 10.968 Atomic orbital electron populations 1.69873 1.06035 1.26836 1.50607 1.24845 0.94669 0.98564 0.94594 0.87043 0.80377 0.84253 0.78257 1.20154 1.22017 1.19004 1.21006 0.87915 0.95053 1.50650 0.89596 1.19806 0.96428 0.82443 0.92918 0.97288 1.21956 0.92530 1.00068 1.00739 1.21697 0.98048 0.96244 1.00487 1.21488 0.98517 0.96724 0.97805 1.22282 0.88090 1.00216 0.97887 1.59595 1.05467 1.20722 1.35555 1.18752 0.96519 0.95635 0.87106 1.20925 0.94132 0.93894 0.99351 1.21053 1.00373 1.00761 0.92305 1.20799 0.97360 0.97473 0.97431 1.20924 0.99844 0.99038 0.97420 1.18568 0.92389 0.90036 0.95224 1.91378 1.63256 1.61213 1.96304 0.92620 0.92973 0.91160 0.93039 0.92778 0.91331 0.92409 0.91837 0.93656 0.84819 0.85818 0.85927 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 2 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 3 Si 0.87 22.04 24.66 -169.99 -4.19 17.85 16 4 H -0.28 -6.71 6.89 56.52 0.39 -6.32 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.27 -6.60 6.39 56.52 0.36 -6.24 16 7 C -0.51 -14.19 8.46 -34.44 -0.29 -14.48 16 8 H 0.09 2.57 6.63 -52.48 -0.35 2.22 16 9 C 0.19 4.58 1.16 -68.87 -0.08 4.50 16 10 H 0.01 0.25 5.81 -51.93 -0.30 -0.05 16 11 C -0.11 -2.53 4.95 -26.65 -0.13 -2.66 16 12 C -0.13 -2.28 6.00 -26.61 -0.16 -2.44 16 13 C -0.11 -1.74 6.09 -26.65 -0.16 -1.90 16 14 C 0.04 0.77 4.94 -3.84 -0.02 0.75 16 15 N -0.49 -10.49 4.46 -164.83 -0.73 -11.22 16 16 C 0.12 2.38 3.71 -83.67 -0.31 2.07 16 17 C -0.06 -1.20 8.81 -39.39 -0.35 -1.54 16 18 C -0.13 -2.00 10.04 -39.60 -0.40 -2.40 16 19 C -0.11 -1.70 10.04 -39.55 -0.40 -2.10 16 20 C -0.15 -2.58 10.02 -39.55 -0.40 -2.98 16 21 C 0.06 1.18 6.75 -39.26 -0.26 0.92 16 22 F -0.14 -2.96 13.60 2.25 0.03 -2.93 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.05 1.20 4.01 -51.93 -0.21 0.99 16 25 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 31 H 0.05 0.87 5.75 -51.93 -0.30 0.57 16 32 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 275.04 15.07 4.14 4.14 Total: -1.00 -30.56 275.04 -7.60 -38.16 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.57 Total: 0.65 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -3.05 Total: -20.19 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.04 Total: -37.69 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.03 Total: -2.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.19 Total: 17.85 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.56 -7.60 -38.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259391793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.285 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds