Wall clock time and date at job start Mon Mar 30 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48502 * 109.47162 * 270.00313 * 3 2 1 5 5 H 1.48492 * 109.47316 * 30.00226 * 3 2 1 6 6 H 1.48497 * 109.46881 * 150.00736 * 3 2 1 7 7 C 1.37870 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99897 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00232 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.45897 * 54.56291 * 9 7 2 11 11 C 1.53039 * 109.46022 * 294.58565 * 9 7 2 12 12 C 1.53121 * 109.27546 * 180.81282 * 11 9 7 13 13 C 1.53118 * 109.15852 * 57.65557 * 12 11 9 14 14 C 1.53041 * 109.28128 * 302.34487 * 13 12 11 15 15 N 1.46840 * 109.52280 * 59.17949 * 14 13 12 16 16 C 1.39841 * 110.99971 * 174.16759 * 15 14 13 17 17 C 1.38838 * 120.07605 * 232.27235 * 16 15 14 18 18 C 1.38158 * 119.94261 * 179.69847 * 17 16 15 19 19 C 1.38265 * 120.11608 * 0.57075 * 18 17 16 20 20 C 1.38292 * 120.15913 * 359.72707 * 19 18 17 21 21 C 1.38274 * 120.04962 * 359.97270 * 20 19 18 22 22 F 1.35105 * 120.05461 * 180.02562 * 21 20 19 23 23 H 0.97000 * 119.99694 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.50628 * 60.87486 * 11 9 7 25 25 H 1.09001 * 109.53168 * 300.77016 * 11 9 7 26 26 H 1.08994 * 109.52161 * 297.75184 * 12 11 9 27 27 H 1.08997 * 109.57457 * 177.58673 * 12 11 9 28 28 H 1.09003 * 109.50629 * 62.28560 * 13 12 11 29 29 H 1.09005 * 109.50373 * 182.40121 * 13 12 11 30 30 H 1.08997 * 109.46586 * 179.20034 * 14 13 12 31 31 H 1.09006 * 109.45400 * 299.16538 * 14 13 12 32 32 H 1.07997 * 120.02731 * 359.97117 * 17 16 15 33 33 H 1.08006 * 119.93900 * 180.31973 * 18 17 16 34 34 H 1.07999 * 119.91965 * 179.74294 * 19 18 17 35 35 H 1.08000 * 119.97341 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8750 -0.5983 0.8362 11 6 4.0209 -0.5934 -1.3133 12 6 5.5520 -0.6141 -1.3180 13 6 6.0356 -2.0549 -1.1313 14 6 5.4678 -2.6132 0.1756 15 7 4.0007 -2.5725 0.1302 16 6 3.4470 -3.1958 1.2529 17 6 2.4878 -4.1872 1.0962 18 6 1.9473 -4.8056 2.2071 19 6 2.3512 -4.4305 3.4751 20 6 3.3018 -3.4392 3.6367 21 6 3.8518 -2.8202 2.5294 22 9 4.7809 -1.8521 2.6871 23 1 -0.4850 0.8401 0.0004 24 1 3.6707 0.4349 -1.4031 25 1 3.6465 -1.1800 -2.1522 26 1 5.9271 0.0045 -0.5028 27 1 5.9195 -0.2268 -2.2682 28 1 5.6928 -2.6650 -1.9670 29 1 7.1248 -2.0708 -1.0911 30 1 5.7987 -3.6437 0.3045 31 1 5.8222 -2.0108 1.0121 32 1 2.1678 -4.4779 0.1065 33 1 1.2048 -5.5804 2.0849 34 1 1.9235 -4.9131 4.3415 35 1 3.6148 -3.1483 4.6286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259391793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:48 Heat of formation + Delta-G solvation = -29.990368 kcal Electronic energy + Delta-G solvation = -19059.162913 eV Core-core repulsion = 16163.692118 eV Total energy + Delta-G solvation = -2895.470794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.97092 -40.77912 -38.82008 -34.90818 -34.58195 -32.10886 -31.46428 -29.96386 -27.28448 -24.82099 -23.68371 -23.40232 -22.28366 -20.66963 -19.01618 -18.47918 -17.75719 -17.23390 -16.61166 -16.41542 -15.91529 -15.57699 -15.13479 -14.94214 -14.73703 -14.40888 -14.24037 -14.13806 -13.91921 -13.06603 -12.91797 -12.76707 -12.56078 -12.50308 -12.21061 -11.95800 -11.79222 -11.58289 -11.21664 -10.93218 -10.68915 -9.72984 -9.48757 -9.17886 -8.30824 -6.31810 0.30121 0.41725 1.22585 1.28426 1.36697 2.27397 2.73355 3.02448 3.03192 3.40937 3.91268 3.95115 4.04912 4.16039 4.19749 4.43919 4.48390 4.52456 4.56447 4.65232 4.75415 4.79726 4.93140 5.02645 5.12369 5.12818 5.18985 5.29062 5.30618 5.46454 5.51664 5.56748 5.67160 5.91962 5.99072 6.50068 6.61998 6.76957 7.31984 8.84966 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018422 B = 0.011665 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.556427 B = 2399.798090 C = 3163.311592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.022 3.978 3 Si 0.926 3.074 4 H -0.258 1.258 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.504 4.504 8 H 0.055 0.945 9 C 0.197 3.803 10 H -0.016 1.016 11 C -0.116 4.116 12 C -0.123 4.123 13 C -0.102 4.102 14 C 0.040 3.960 15 N -0.499 5.499 16 C 0.082 3.918 17 C -0.085 4.085 18 C -0.121 4.121 19 C -0.102 4.102 20 C -0.155 4.155 21 C 0.029 3.971 22 F -0.154 7.154 23 H 0.265 0.735 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.127 0.873 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.107 -7.564 3.482 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.176 4.176 3 Si 0.753 3.247 4 H -0.184 1.184 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.091 3.909 10 H 0.002 0.998 11 C -0.154 4.154 12 C -0.160 4.160 13 C -0.140 4.140 14 C -0.087 4.087 15 N -0.220 5.220 16 C -0.014 4.014 17 C -0.104 4.104 18 C -0.139 4.139 19 C -0.119 4.119 20 C -0.174 4.174 21 C 0.008 3.992 22 F -0.133 7.133 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.145 0.855 33 H 0.175 0.825 34 H 0.185 0.815 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.865 -7.653 3.035 12.849 hybrid contribution 0.193 1.807 0.650 1.930 sum 10.057 -5.846 3.684 12.202 Atomic orbital electron populations 1.70000 1.07577 1.27672 1.52834 1.25559 0.95332 1.01926 0.94744 0.86147 0.79120 0.80306 0.79096 1.18372 1.22073 1.18636 1.21243 0.90193 0.93747 1.49040 0.92726 1.19541 0.93911 0.84316 0.93143 0.99808 1.21868 0.95853 0.98791 0.98926 1.21677 0.94656 0.97707 1.02006 1.21515 1.00539 0.95289 0.96622 1.22411 0.86257 1.01208 0.98795 1.59562 1.07328 1.18608 1.36505 1.19020 0.97994 0.96912 0.87426 1.21099 0.94445 0.94554 1.00310 1.21490 1.00033 1.00618 0.91774 1.21329 0.95830 0.96182 0.98586 1.21334 0.99570 0.98811 0.97661 1.18883 0.93357 0.90911 0.96088 1.91338 1.63770 1.61837 1.96370 0.92588 0.94241 0.91755 0.93332 0.89823 0.90876 0.88836 0.90250 0.94714 0.85541 0.82450 0.81526 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 2 C 0.02 1.31 5.45 84.65 0.46 1.78 16 3 Si 0.93 46.14 24.66 68.60 1.69 47.83 16 4 H -0.26 -12.06 6.89 99.48 0.68 -11.38 16 5 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.26 -12.76 6.39 99.48 0.64 -12.13 16 7 C -0.50 -29.03 8.46 25.60 0.22 -28.81 16 8 H 0.05 3.42 6.63 -2.91 -0.02 3.40 16 9 C 0.20 9.66 1.16 44.19 0.05 9.71 16 10 H -0.02 -0.83 5.81 -2.39 -0.01 -0.85 16 11 C -0.12 -5.05 4.95 30.65 0.15 -4.90 16 12 C -0.12 -4.14 6.00 30.67 0.18 -3.96 16 13 C -0.10 -3.05 6.09 30.65 0.19 -2.86 16 14 C 0.04 1.41 4.94 86.33 0.43 1.84 16 15 N -0.50 -21.45 4.46 -675.41 -3.01 -24.46 16 16 C 0.08 3.42 3.71 38.21 0.14 3.56 16 17 C -0.09 -3.20 8.81 22.39 0.20 -3.00 16 18 C -0.12 -3.59 10.04 22.26 0.22 -3.37 16 19 C -0.10 -2.77 10.04 22.29 0.22 -2.55 16 20 C -0.15 -4.95 10.02 22.29 0.22 -4.73 16 21 C 0.03 1.15 6.75 22.48 0.15 1.30 16 22 F -0.15 -6.46 13.60 44.97 0.61 -5.84 16 23 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 24 H 0.04 1.79 4.01 -2.39 -0.01 1.78 16 25 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.16 8.14 -2.38 -0.02 2.15 16 30 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 31 H 0.03 1.31 5.75 -2.38 -0.01 1.30 16 32 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -68.55 275.04 3.42 -65.13 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.99 Total: 11.91 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 2.84 Total: -35.99 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -2.71 Total: -83.04 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.61 Total: -5.84 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.69 Total: 47.83 kcal Total: -68.55 3.42 -65.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259391793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.141 kcal (2) G-P(sol) polarization free energy of solvation -68.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds