Wall clock time and date at job start Mon Mar 30 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48500 * 109.47090 * 264.76579 * 3 2 1 5 5 H 1.48496 * 109.47149 * 24.76512 * 3 2 1 6 6 H 1.48499 * 109.47431 * 144.76702 * 3 2 1 7 7 C 1.37880 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99804 * 4.86967 * 7 2 1 9 9 C 1.50701 * 120.00093 * 184.87279 * 7 2 1 10 10 H 1.08999 * 109.44871 * 334.94755 * 9 7 2 11 11 C 1.53034 * 109.46529 * 94.92691 * 9 7 2 12 12 C 1.53113 * 109.27726 * 179.19578 * 11 9 7 13 13 C 1.53112 * 109.16173 * 302.34289 * 12 11 9 14 14 C 1.53040 * 109.27854 * 57.65785 * 13 12 11 15 15 N 1.46844 * 109.46016 * 214.98089 * 9 7 2 16 16 C 1.39827 * 111.00336 * 54.14284 * 15 9 7 17 17 C 1.38872 * 120.04712 * 234.36757 * 16 15 9 18 18 C 1.38127 * 119.94641 * 179.76642 * 17 16 15 19 19 C 1.38463 * 120.04903 * 0.50930 * 18 17 16 20 20 F 1.35099 * 119.94861 * 179.76878 * 19 18 17 21 21 C 1.38464 * 120.09793 * 359.74222 * 19 18 17 22 22 C 1.38119 * 120.05063 * 0.02562 * 21 19 18 23 23 H 0.96993 * 119.99906 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.49958 * 299.13500 * 11 9 7 25 25 H 1.08997 * 109.50442 * 59.25096 * 11 9 7 26 26 H 1.08999 * 109.52244 * 62.25236 * 12 11 9 27 27 H 1.09007 * 109.52239 * 182.37296 * 12 11 9 28 28 H 1.08997 * 109.50350 * 177.59895 * 13 12 11 29 29 H 1.09002 * 109.50361 * 297.67161 * 13 12 11 30 30 H 1.08999 * 109.45922 * 180.80816 * 14 13 12 31 31 H 1.08998 * 109.46131 * 60.83847 * 14 13 12 32 32 H 1.07999 * 120.02784 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.97117 * 180.23105 * 18 17 16 34 34 H 1.08001 * 119.97196 * 179.97438 * 21 19 18 35 35 H 1.07994 * 120.02465 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6073 1.9825 -1.3942 5 1 1.3957 2.6820 0.5865 6 1 3.4871 1.4747 0.8077 7 6 2.0046 -1.1941 0.0005 8 1 1.4675 -2.1277 -0.0785 9 6 3.5075 -1.1964 0.1114 10 1 3.9000 -0.2484 -0.2564 11 6 3.9105 -1.3814 1.5761 12 6 5.4379 -1.4032 1.6812 13 6 5.9864 -2.5277 0.7985 14 6 5.5232 -2.3094 -0.6437 15 7 4.0556 -2.2972 -0.6912 16 6 3.5975 -2.2318 -2.0107 17 6 2.9706 -3.3301 -2.5844 18 6 2.5146 -3.2616 -3.8864 19 6 2.6916 -2.1025 -4.6229 20 9 2.2489 -2.0392 -5.8978 21 6 3.3210 -1.0079 -4.0545 22 6 3.7743 -1.0704 -2.7513 23 1 -0.4850 0.8400 -0.0004 24 1 3.5167 -0.5558 2.1689 25 1 3.5066 -2.3227 1.9485 26 1 5.8398 -0.4474 1.3452 27 1 5.7293 -1.5770 2.7171 28 1 7.0757 -2.5211 0.8358 29 1 5.6157 -3.4872 1.1592 30 1 5.9002 -3.1163 -1.2722 31 1 5.9064 -1.3562 -1.0079 32 1 2.8360 -4.2358 -2.0117 33 1 2.0237 -4.1143 -4.3318 34 1 3.4583 -0.1050 -4.6310 35 1 4.2647 -0.2163 -2.3083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259403201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:51 Heat of formation + Delta-G solvation = -36.249731 kcal Electronic energy + Delta-G solvation = -18642.600928 eV Core-core repulsion = 15746.858708 eV Total energy + Delta-G solvation = -2895.742220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.82295 -41.03653 -38.59139 -34.84942 -34.29819 -32.09224 -31.94788 -29.58998 -27.28169 -24.76249 -23.99961 -23.16854 -22.19689 -20.37515 -19.01013 -18.69647 -17.76756 -17.18008 -16.53508 -16.33371 -15.78392 -15.41880 -14.95456 -14.84423 -14.59332 -14.49154 -14.38825 -14.23435 -13.79563 -13.21280 -12.94760 -12.87662 -12.60051 -12.49394 -12.03029 -11.90601 -11.73733 -11.50938 -11.22990 -10.86950 -10.71469 -9.98218 -9.41246 -9.07264 -8.29116 -6.30717 0.26648 0.36571 1.26363 1.28945 1.37374 2.29670 2.68204 2.94791 3.21417 3.36590 3.85301 3.97866 4.06304 4.14669 4.24724 4.36734 4.50181 4.50791 4.65612 4.70562 4.76886 4.85570 5.01389 5.03115 5.15223 5.19611 5.22820 5.24927 5.28860 5.39470 5.55337 5.60455 5.74423 5.92766 6.06153 6.56963 6.65993 6.81964 7.35366 8.87980 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.010762 C = 0.007820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.788501 B = 2601.057905 C = 3579.703426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.024 3.976 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.493 4.493 8 H 0.035 0.965 9 C 0.194 3.806 10 H 0.001 0.999 11 C -0.107 4.107 12 C -0.122 4.122 13 C -0.105 4.105 14 C 0.054 3.946 15 N -0.509 5.509 16 C 0.123 3.877 17 C -0.084 4.084 18 C -0.141 4.141 19 C 0.063 3.937 20 F -0.148 7.148 21 C -0.148 4.148 22 C -0.134 4.134 23 H 0.264 0.736 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.028 0.972 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.676 -3.693 -3.541 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.174 4.174 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.088 3.912 10 H 0.018 0.982 11 C -0.145 4.145 12 C -0.159 4.159 13 C -0.143 4.143 14 C -0.072 4.072 15 N -0.231 5.231 16 C 0.029 3.971 17 C -0.103 4.103 18 C -0.160 4.160 19 C 0.044 3.956 20 F -0.127 7.127 21 C -0.168 4.168 22 C -0.154 4.154 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.160 0.840 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.370 -4.019 -3.345 13.429 hybrid contribution -0.385 1.824 -0.522 1.936 sum 11.984 -2.195 -3.867 12.783 Atomic orbital electron populations 1.70027 1.07997 1.27680 1.52657 1.25674 0.95208 1.02038 0.94524 0.86187 0.79993 0.80193 0.79468 1.19360 1.21450 1.16621 1.20991 0.90724 0.92798 1.48613 0.94647 1.19634 0.92960 0.87350 0.91212 0.98159 1.21705 0.95618 1.00761 0.96463 1.21679 0.94729 0.98798 1.00723 1.21542 1.00785 0.98975 0.93002 1.22266 0.85739 1.00352 0.98860 1.59778 1.08483 1.47682 1.07127 1.18873 0.96042 0.92961 0.89218 1.21014 0.96260 0.99156 0.93848 1.21234 1.02229 0.97818 0.94742 1.17717 1.01618 0.96377 0.79862 1.91436 1.87804 1.97020 1.36420 1.21075 1.00911 0.98556 0.96210 1.21475 1.01146 0.98692 0.94094 0.92727 0.93823 0.92671 0.92893 0.90372 0.88935 0.91219 0.89820 0.95366 0.84018 0.82531 0.84005 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.37 13.96 21.45 0.30 -58.07 16 2 C 0.02 1.34 5.47 84.66 0.46 1.80 16 3 Si 0.92 43.19 26.99 68.60 1.85 45.05 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.24 -10.47 6.82 99.48 0.68 -9.79 16 7 C -0.49 -27.11 7.94 25.60 0.20 -26.91 16 8 H 0.04 2.23 8.06 -2.91 -0.02 2.20 16 9 C 0.19 8.62 1.10 44.19 0.05 8.67 16 10 H 0.00 0.04 4.25 -2.39 -0.01 0.03 16 11 C -0.11 -4.21 5.36 30.64 0.16 -4.05 16 12 C -0.12 -3.58 6.00 30.67 0.18 -3.39 16 13 C -0.11 -2.71 6.09 30.65 0.19 -2.53 16 14 C 0.05 1.62 5.23 86.33 0.45 2.07 16 15 N -0.51 -19.73 4.47 -675.61 -3.02 -22.75 16 16 C 0.12 4.81 3.62 38.17 0.14 4.95 16 17 C -0.08 -3.00 9.97 22.40 0.22 -2.77 16 18 C -0.14 -4.62 10.02 22.30 0.22 -4.40 16 19 C 0.06 2.19 7.30 22.38 0.16 2.36 16 20 F -0.15 -4.92 17.26 44.97 0.78 -4.15 16 21 C -0.15 -5.23 10.02 22.30 0.22 -5.01 16 22 C -0.13 -5.12 8.71 22.39 0.20 -4.92 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.22 8.11 -2.39 -0.02 2.20 16 31 H 0.03 0.85 7.88 -2.39 -0.02 0.83 16 32 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.12 4.40 7.13 -2.91 -0.02 4.38 16 Total: -1.00 -63.68 287.30 3.82 -59.86 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.04 Total: 14.19 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 2.87 Total: -34.12 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -2.72 Total: -80.82 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.78 Total: -4.15 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.85 Total: 45.05 kcal Total: -63.68 3.82 -59.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.610 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds