Wall clock time and date at job start Mon Mar 30 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99828 * 2 1 4 4 H 1.48495 * 109.47471 * 270.00144 * 3 2 1 5 5 H 1.48503 * 109.47141 * 30.00439 * 3 2 1 6 6 H 1.48504 * 109.46998 * 149.99906 * 3 2 1 7 7 C 1.37872 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00221 * 359.72083 * 7 2 1 10 10 H 1.09003 * 109.45722 * 60.30050 * 9 7 2 11 11 C 1.53040 * 109.46359 * 300.33394 * 9 7 2 12 12 C 1.53111 * 109.27917 * 180.80256 * 11 9 7 13 13 C 1.53117 * 109.16322 * 57.65414 * 12 11 9 14 14 C 1.53046 * 109.27763 * 302.34423 * 13 12 11 15 15 N 1.46842 * 109.46553 * 180.27797 * 9 7 2 16 16 C 1.39818 * 111.00047 * 305.85603 * 15 9 7 17 17 C 1.38883 * 120.05152 * 305.82227 * 16 15 9 18 18 C 1.38122 * 119.95203 * 179.72209 * 17 16 15 19 19 C 1.38470 * 120.04705 * 0.52671 * 18 17 16 20 20 F 1.35098 * 119.94452 * 179.74485 * 19 18 17 21 21 C 1.38460 * 120.09688 * 359.77085 * 19 18 17 22 22 C 1.38121 * 120.05444 * 359.95131 * 21 19 18 23 23 H 0.97000 * 119.99929 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.49730 * 300.74250 * 11 9 7 25 25 H 1.09000 * 109.50406 * 60.85832 * 11 9 7 26 26 H 1.09002 * 109.52315 * 297.74668 * 12 11 9 27 27 H 1.09002 * 109.57497 * 177.58566 * 12 11 9 28 28 H 1.09001 * 109.50448 * 182.40395 * 13 12 11 29 29 H 1.08998 * 109.50430 * 62.28581 * 13 12 11 30 30 H 1.09001 * 109.46204 * 299.16251 * 14 13 12 31 31 H 1.08996 * 109.46043 * 179.19664 * 14 13 12 32 32 H 1.08001 * 120.01967 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.97686 * 180.27454 * 18 17 16 34 34 H 1.08007 * 119.96936 * 179.97438 * 21 19 18 35 35 H 1.08001 * 120.02706 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 0.0052 10 1 0.6248 -2.5608 -0.8848 11 6 0.3703 -2.5739 1.2545 12 6 -0.3779 -3.9098 1.2663 13 6 0.6376 -5.0549 1.2222 14 6 1.5107 -4.9083 -0.0262 15 7 2.2055 -3.6151 0.0102 16 6 3.1122 -3.5036 -1.0483 17 6 2.6481 -3.3699 -2.3505 18 6 3.5457 -3.2541 -3.3939 19 6 4.9073 -3.2823 -3.1437 20 9 5.7833 -3.1741 -4.1664 21 6 5.3721 -3.4218 -1.8469 22 6 4.4782 -3.5321 -0.7997 23 1 -0.4850 0.8401 -0.0004 24 1 0.9945 -2.4985 2.1449 25 1 -0.3484 -1.7545 1.2427 26 1 -1.0316 -3.9689 0.3961 27 1 -0.9740 -3.9865 2.1757 28 1 0.1099 -6.0081 1.1873 29 1 1.2660 -5.0186 2.1121 30 1 0.8832 -4.9586 -0.9161 31 1 2.2441 -5.7141 -0.0531 32 1 1.5862 -3.3523 -2.5465 33 1 3.1852 -3.1457 -4.4062 34 1 6.4346 -3.4439 -1.6541 35 1 4.8413 -3.6404 0.2116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259403203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:56 Heat of formation + Delta-G solvation = -20.956303 kcal Electronic energy + Delta-G solvation = -18500.289396 eV Core-core repulsion = 15605.210348 eV Total energy + Delta-G solvation = -2895.079048 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.47237 -39.46396 -37.04331 -32.97093 -32.76754 -30.64199 -29.55732 -28.06869 -25.31969 -23.23920 -22.54990 -21.60702 -20.72133 -18.71323 -17.28986 -16.74819 -15.86032 -15.59962 -15.17683 -14.74930 -14.02775 -13.82896 -13.49197 -13.31227 -13.03579 -13.00018 -12.67794 -12.27558 -11.96283 -11.71515 -11.32947 -10.97823 -10.78311 -10.68663 -10.54561 -10.28320 -10.07158 -9.72083 -9.47470 -8.87569 -8.59933 -8.49226 -7.90232 -7.42726 -6.06192 -4.10162 1.67895 1.75782 3.29200 3.35778 3.40324 4.10912 4.36943 4.68851 4.76311 5.24419 5.26022 5.28778 5.52611 5.58404 5.76389 5.81632 5.89627 6.08077 6.13303 6.27507 6.32134 6.42468 6.50741 6.59175 6.68188 6.71233 6.80255 6.95289 7.01980 7.20635 7.30924 7.45161 7.69853 7.78705 8.19131 8.26107 8.48723 8.95982 9.54911 11.00072 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.010370 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.534385 B = 2699.528141 C = 4044.495641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.223 3.777 10 H 0.004 0.996 11 C -0.106 4.106 12 C -0.124 4.124 13 C -0.111 4.111 14 C 0.064 3.936 15 N -0.508 5.508 16 C 0.139 3.861 17 C -0.112 4.112 18 C -0.145 4.145 19 C 0.069 3.931 20 F -0.152 7.152 21 C -0.151 4.151 22 C -0.081 4.081 23 H 0.261 0.739 24 H 0.045 0.955 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -8.331 -1.716 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.119 3.881 10 H 0.022 0.978 11 C -0.145 4.145 12 C -0.162 4.162 13 C -0.149 4.149 14 C -0.063 4.063 15 N -0.230 5.230 16 C 0.044 3.956 17 C -0.132 4.132 18 C -0.165 4.165 19 C 0.050 3.950 20 F -0.131 7.131 21 C -0.170 4.170 22 C -0.100 4.100 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.964 -8.175 -1.284 9.175 hybrid contribution 0.069 1.081 -0.954 1.443 sum 4.033 -7.094 -2.238 8.461 Atomic orbital electron populations 1.69866 1.05829 1.26602 1.50826 1.24865 0.94839 0.99051 0.95081 0.86562 0.79942 0.83263 0.78129 1.20752 1.21214 1.19784 1.21116 0.93334 0.89589 1.50155 0.91968 1.19339 0.88424 0.86494 0.93853 0.97810 1.21671 0.99067 0.95217 0.98532 1.21704 0.97411 0.97000 1.00059 1.21555 0.97471 0.97792 0.98105 1.22011 0.95831 0.91350 0.97113 1.59852 1.19471 1.03272 1.40445 1.18784 0.92697 0.95144 0.88981 1.21550 0.99858 0.98885 0.92896 1.20900 0.91296 1.04062 1.00203 1.17605 0.86995 1.06042 0.84408 1.91428 1.68948 1.94076 1.58619 1.20933 1.00370 1.04649 0.91098 1.20885 0.91699 0.98830 0.98601 0.92913 0.93653 0.88516 0.93301 0.93498 0.92906 0.91648 0.95573 0.92132 0.85663 0.85711 0.85431 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.63 11.32 55.43 0.63 -24.01 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.50 -13.38 7.97 -34.44 -0.27 -13.65 16 8 H 0.06 1.70 7.09 -52.48 -0.37 1.33 16 9 C 0.22 5.33 1.44 -68.88 -0.10 5.23 16 10 H 0.00 0.11 7.07 -51.93 -0.37 -0.25 16 11 C -0.11 -2.43 5.13 -26.65 -0.14 -2.57 16 12 C -0.12 -2.30 6.00 -26.61 -0.16 -2.46 16 13 C -0.11 -1.82 6.09 -26.65 -0.16 -1.99 16 14 C 0.06 1.11 5.24 -3.83 -0.02 1.09 16 15 N -0.51 -10.46 4.47 -164.89 -0.74 -11.20 16 16 C 0.14 2.72 3.28 -83.74 -0.28 2.44 16 17 C -0.11 -2.12 8.71 -39.39 -0.34 -2.46 16 18 C -0.15 -2.50 10.02 -39.54 -0.40 -2.90 16 19 C 0.07 1.17 7.30 -39.41 -0.29 0.88 16 20 F -0.15 -2.52 17.26 2.25 0.04 -2.48 16 21 C -0.15 -2.46 10.02 -39.54 -0.40 -2.85 16 22 C -0.08 -1.43 9.87 -39.39 -0.39 -1.82 16 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.10 2.47 6.08 -51.93 -0.32 2.15 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.46 7.92 -51.93 -0.41 0.05 16 31 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.13 2.41 7.14 -52.49 -0.37 2.04 16 33 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -27.34 286.87 -8.58 -35.93 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.78 Total: 0.60 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -3.03 Total: -19.45 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.11 Total: -35.20 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.34 -8.58 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.969 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds