Wall clock time and date at job start Mon Mar 30 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99828 * 2 1 4 4 H 1.48495 * 109.47471 * 270.00144 * 3 2 1 5 5 H 1.48503 * 109.47141 * 30.00439 * 3 2 1 6 6 H 1.48504 * 109.46998 * 149.99906 * 3 2 1 7 7 C 1.37872 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00221 * 359.72083 * 7 2 1 10 10 H 1.09003 * 109.45722 * 60.30050 * 9 7 2 11 11 C 1.53040 * 109.46359 * 300.33394 * 9 7 2 12 12 C 1.53111 * 109.27917 * 180.80256 * 11 9 7 13 13 C 1.53117 * 109.16322 * 57.65414 * 12 11 9 14 14 C 1.53046 * 109.27763 * 302.34423 * 13 12 11 15 15 N 1.46842 * 109.46553 * 180.27797 * 9 7 2 16 16 C 1.39818 * 111.00047 * 305.85603 * 15 9 7 17 17 C 1.38883 * 120.05152 * 305.82227 * 16 15 9 18 18 C 1.38122 * 119.95203 * 179.72209 * 17 16 15 19 19 C 1.38470 * 120.04705 * 0.52671 * 18 17 16 20 20 F 1.35098 * 119.94452 * 179.74485 * 19 18 17 21 21 C 1.38460 * 120.09688 * 359.77085 * 19 18 17 22 22 C 1.38121 * 120.05444 * 359.95131 * 21 19 18 23 23 H 0.97000 * 119.99929 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.49730 * 300.74250 * 11 9 7 25 25 H 1.09000 * 109.50406 * 60.85832 * 11 9 7 26 26 H 1.09002 * 109.52315 * 297.74668 * 12 11 9 27 27 H 1.09002 * 109.57497 * 177.58566 * 12 11 9 28 28 H 1.09001 * 109.50448 * 182.40395 * 13 12 11 29 29 H 1.08998 * 109.50430 * 62.28581 * 13 12 11 30 30 H 1.09001 * 109.46204 * 299.16251 * 14 13 12 31 31 H 1.08996 * 109.46043 * 179.19664 * 14 13 12 32 32 H 1.08001 * 120.01967 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.97686 * 180.27454 * 18 17 16 34 34 H 1.08007 * 119.96936 * 179.97438 * 21 19 18 35 35 H 1.08001 * 120.02706 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 0.0052 10 1 0.6248 -2.5608 -0.8848 11 6 0.3703 -2.5739 1.2545 12 6 -0.3779 -3.9098 1.2663 13 6 0.6376 -5.0549 1.2222 14 6 1.5107 -4.9083 -0.0262 15 7 2.2055 -3.6151 0.0102 16 6 3.1122 -3.5036 -1.0483 17 6 2.6481 -3.3699 -2.3505 18 6 3.5457 -3.2541 -3.3939 19 6 4.9073 -3.2823 -3.1437 20 9 5.7833 -3.1741 -4.1664 21 6 5.3721 -3.4218 -1.8469 22 6 4.4782 -3.5321 -0.7997 23 1 -0.4850 0.8401 -0.0004 24 1 0.9945 -2.4985 2.1449 25 1 -0.3484 -1.7545 1.2427 26 1 -1.0316 -3.9689 0.3961 27 1 -0.9740 -3.9865 2.1757 28 1 0.1099 -6.0081 1.1873 29 1 1.2660 -5.0186 2.1121 30 1 0.8832 -4.9586 -0.9161 31 1 2.2441 -5.7141 -0.0531 32 1 1.5862 -3.3523 -2.5465 33 1 3.1852 -3.1457 -4.4062 34 1 6.4346 -3.4439 -1.6541 35 1 4.8413 -3.6404 0.2116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259403203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:55 Heat of formation + Delta-G solvation = -34.915550 kcal Electronic energy + Delta-G solvation = -18500.894714 eV Core-core repulsion = 15605.210348 eV Total energy + Delta-G solvation = -2895.684366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.80753 -40.97092 -38.53086 -34.92856 -34.25856 -32.01859 -31.31660 -29.52717 -27.20853 -24.78106 -23.96179 -23.25284 -22.20560 -20.30889 -18.72645 -18.51527 -17.47586 -17.12595 -16.59481 -16.46902 -15.55578 -15.40729 -15.06196 -14.78642 -14.45230 -14.37116 -14.28855 -13.94193 -13.60583 -13.17716 -12.87279 -12.77434 -12.62571 -12.33392 -12.03466 -11.96344 -11.82792 -11.42551 -11.07744 -10.74243 -10.48395 -9.96918 -9.38771 -9.03269 -8.11127 -6.20940 0.27065 0.37856 1.38312 1.40349 1.49580 2.40584 2.70112 3.14681 3.22316 3.37622 3.89244 4.00650 4.12703 4.17805 4.34496 4.41549 4.52688 4.63782 4.71635 4.83152 4.87753 5.03876 5.07098 5.09977 5.22651 5.26408 5.30065 5.30160 5.43954 5.63100 5.67382 5.75108 5.84481 5.93783 6.29799 6.51298 6.74178 6.96066 7.46981 8.93655 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.010370 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.534385 B = 2699.528141 C = 4044.495641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.232 3.768 10 H -0.030 1.030 11 C -0.102 4.102 12 C -0.119 4.119 13 C -0.104 4.104 14 C 0.060 3.940 15 N -0.511 5.511 16 C 0.114 3.886 17 C -0.128 4.128 18 C -0.146 4.146 19 C 0.065 3.935 20 F -0.147 7.147 21 C -0.140 4.140 22 C -0.086 4.086 23 H 0.261 0.739 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.021 0.979 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 -9.300 -1.550 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.207 1.207 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.127 3.873 10 H -0.012 1.012 11 C -0.141 4.141 12 C -0.156 4.156 13 C -0.142 4.142 14 C -0.067 4.067 15 N -0.233 5.233 16 C 0.020 3.980 17 C -0.148 4.148 18 C -0.165 4.165 19 C 0.046 3.954 20 F -0.126 7.126 21 C -0.159 4.159 22 C -0.105 4.105 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.321 -9.160 -1.120 10.652 hybrid contribution -0.310 1.354 -1.059 1.747 sum 5.012 -7.806 -2.180 9.529 Atomic orbital electron populations 1.69988 1.06840 1.27070 1.51644 1.25530 0.95562 1.01810 0.95143 0.85731 0.78963 0.80108 0.77953 1.20743 1.20717 1.19438 1.21345 0.92961 0.91108 1.49652 0.93009 1.19043 0.88492 0.87035 0.92726 1.01209 1.21493 0.98375 0.96805 0.97430 1.21626 0.97735 0.95502 1.00769 1.21541 0.96824 0.98283 0.97523 1.22167 0.96467 0.90463 0.97565 1.59808 1.18898 1.03483 1.41109 1.19015 0.93449 0.96631 0.88928 1.21486 0.99518 1.00332 0.93455 1.21072 0.91465 1.03297 1.00674 1.17710 0.86915 1.05848 0.84932 1.91443 1.68674 1.94015 1.58477 1.21230 1.01791 1.02680 0.90210 1.21041 0.90988 0.98733 0.99700 0.93014 0.94736 0.91719 0.93904 0.91544 0.89352 0.91320 0.96108 0.89819 0.87098 0.83935 0.82261 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.87 11.32 21.44 0.24 -51.63 16 2 C 0.02 1.01 5.30 84.65 0.45 1.46 16 3 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.51 -27.71 7.97 25.60 0.20 -27.50 16 8 H 0.05 2.85 7.09 -2.91 -0.02 2.83 16 9 C 0.23 11.36 1.44 44.19 0.06 11.42 16 10 H -0.03 -1.62 7.07 -2.39 -0.02 -1.63 16 11 C -0.10 -4.76 5.13 30.64 0.16 -4.60 16 12 C -0.12 -4.31 6.00 30.67 0.18 -4.13 16 13 C -0.10 -3.17 6.09 30.65 0.19 -2.98 16 14 C 0.06 2.01 5.24 86.33 0.45 2.46 16 15 N -0.51 -20.92 4.47 -675.59 -3.02 -23.94 16 16 C 0.11 4.43 3.28 38.18 0.13 4.56 16 17 C -0.13 -4.87 8.71 22.40 0.20 -4.67 16 18 C -0.15 -4.89 10.02 22.30 0.22 -4.67 16 19 C 0.07 2.09 7.30 22.38 0.16 2.25 16 20 F -0.15 -4.53 17.26 44.97 0.78 -3.76 16 21 C -0.14 -4.19 10.02 22.29 0.22 -3.97 16 22 C -0.09 -2.89 9.87 22.40 0.22 -2.67 16 23 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 24 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 3.41 6.08 -2.39 -0.01 3.40 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.02 0.72 7.92 -2.39 -0.02 0.70 16 31 H 0.08 2.44 8.11 -2.39 -0.02 2.42 16 32 H 0.11 4.46 7.14 -2.91 -0.02 4.44 16 33 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -59.07 286.87 3.95 -55.12 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.07 Total: 11.23 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 2.85 Total: -33.05 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -2.78 Total: -75.57 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.76 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -59.07 3.95 -55.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.206 kcal (2) G-P(sol) polarization free energy of solvation -59.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds