Wall clock time and date at job start Mon Mar 30 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48499 * 109.47111 * 240.00159 * 3 2 1 5 5 H 1.48497 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47117 * 120.00154 * 3 2 1 7 7 C 1.37871 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00177 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49828 * 299.92802 * 9 7 2 11 11 C 1.53119 * 109.50041 * 60.00087 * 9 7 2 12 12 C 1.53115 * 109.16086 * 177.59710 * 11 9 7 13 13 C 1.53045 * 109.27971 * 302.34662 * 12 11 9 14 14 N 1.46848 * 109.51848 * 59.17700 * 13 12 11 15 15 C 1.39825 * 110.99705 * 174.16010 * 14 13 12 16 16 C 1.38875 * 120.05080 * 235.77005 * 15 14 13 17 17 C 1.38126 * 119.94918 * 179.74124 * 16 15 14 18 18 C 1.38463 * 120.04734 * 0.53362 * 17 16 15 19 19 F 1.35104 * 119.95015 * 179.69444 * 18 17 16 20 20 C 1.38461 * 120.09901 * 359.72547 * 18 17 16 21 21 C 1.38118 * 120.05046 * 0.02562 * 20 18 17 22 22 C 1.46843 * 111.20173 * 298.25870 * 14 13 12 23 23 H 0.97002 * 120.00482 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.52412 * 57.69321 * 11 9 7 25 25 H 1.08997 * 109.57552 * 297.53515 * 11 9 7 26 26 H 1.08998 * 109.50305 * 182.40603 * 12 11 9 27 27 H 1.08997 * 109.53939 * 62.30582 * 12 11 9 28 28 H 1.09000 * 109.46198 * 299.16264 * 13 12 11 29 29 H 1.08992 * 109.45165 * 179.18562 * 13 12 11 30 30 H 1.08002 * 120.02251 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.97415 * 180.23806 * 17 16 15 32 32 H 1.08007 * 119.97423 * 179.97438 * 20 18 17 33 33 H 1.08002 * 120.02424 * 179.97438 * 21 20 18 34 34 H 1.08999 * 109.46355 * 181.76034 * 22 14 13 35 35 H 1.09001 * 109.45931 * 301.72798 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6256 -2.5582 0.8902 11 6 0.3701 -2.5808 -1.2502 12 6 -0.3456 -3.9342 -1.2731 13 6 0.6946 -5.0564 -1.2417 14 7 1.5112 -4.9347 -0.0274 15 6 2.3846 -6.0192 0.0999 16 6 2.3688 -6.7932 1.2528 17 6 3.2288 -7.8673 1.3741 18 6 4.1137 -8.1658 0.3518 19 9 4.9582 -9.2131 0.4751 20 6 4.1349 -7.3921 -0.7963 21 6 3.2732 -6.3203 -0.9240 22 6 2.2449 -3.6628 -0.0061 23 1 -0.4851 0.8400 -0.0004 24 1 0.9909 -2.4819 -2.1407 25 1 -0.3678 -1.7788 -1.2298 26 1 -0.9413 -4.0155 -2.1822 27 1 -0.9966 -4.0171 -0.4028 28 1 1.3361 -4.9816 -2.1198 29 1 0.1877 -6.0213 -1.2433 30 1 1.6815 -6.5583 2.0521 31 1 3.2142 -8.4718 2.2689 32 1 4.8263 -7.6265 -1.5922 33 1 3.2904 -5.7168 -1.8195 34 1 2.8642 -3.6158 0.8897 35 1 2.8791 -3.5946 -0.8899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259424872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:07 Heat of formation + Delta-G solvation = -23.670986 kcal Electronic energy + Delta-G solvation = -17911.000406 eV Core-core repulsion = 15015.803640 eV Total energy + Delta-G solvation = -2895.196765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.84389 -39.77262 -37.29809 -33.75187 -31.86169 -31.08445 -29.95769 -28.28658 -24.99469 -23.70326 -22.89968 -21.56625 -21.01877 -18.65708 -17.69548 -16.86146 -16.19873 -15.76564 -15.54631 -14.70332 -14.32175 -14.18019 -13.83158 -13.47473 -13.33648 -12.90888 -12.69614 -12.42995 -12.11271 -11.88599 -11.63441 -11.07617 -10.95577 -10.79172 -10.72277 -10.18436 -9.91641 -9.56269 -9.16982 -9.05985 -8.79364 -8.40980 -8.29791 -7.91875 -6.00445 -4.07060 1.18984 1.29659 3.30829 3.35743 3.38124 3.63652 4.21717 4.33204 4.46201 4.82439 4.89245 5.29519 5.31758 5.42831 5.51956 5.70283 5.79108 5.96276 5.99879 6.15131 6.16406 6.25000 6.30518 6.43137 6.53510 6.65259 6.69983 6.85556 6.92183 7.13226 7.36835 7.49255 7.72274 7.87058 8.03129 8.12313 8.42675 8.96307 9.57559 11.05471 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.005164 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.876547 B = 5421.048276 C = 5838.646849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.036 0.964 11 C -0.112 4.112 12 C -0.118 4.118 13 C 0.067 3.933 14 N -0.508 5.508 15 C 0.099 3.901 16 C -0.073 4.073 17 C -0.148 4.148 18 C 0.079 3.921 19 F -0.146 7.146 20 C -0.145 4.145 21 C -0.125 4.125 22 C 0.073 3.927 23 H 0.261 0.739 24 H 0.031 0.969 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.029 0.971 29 H 0.060 0.940 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -13.163 -1.072 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.060 4.060 14 N -0.230 5.230 15 C 0.005 3.995 16 C -0.092 4.092 17 C -0.167 4.167 18 C 0.060 3.940 19 F -0.125 7.125 20 C -0.164 4.164 21 C -0.145 4.145 22 C -0.052 4.052 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.148 -13.043 -0.670 13.434 hybrid contribution 1.232 0.732 -0.747 1.616 sum 4.379 -12.311 -1.417 13.143 Atomic orbital electron populations 1.69871 1.05841 1.26519 1.50418 1.24914 0.94825 0.98937 0.95013 0.86681 0.79621 0.83231 0.78588 1.20374 1.21281 1.20275 1.21078 0.92803 0.90566 1.51099 0.92862 1.18681 0.92557 0.90104 0.95024 0.94598 1.21675 1.00112 0.94743 0.98455 1.21693 0.97078 0.96250 1.00525 1.22109 0.95369 0.99196 0.89328 1.59802 1.22698 1.01257 1.39195 1.19174 0.92980 0.93784 0.93574 1.20989 0.97819 0.92813 0.97589 1.21063 0.97129 0.99665 0.98887 1.17679 0.92439 0.87526 0.96367 1.91467 1.69346 1.55362 1.96343 1.20973 1.01479 0.96632 0.97342 1.21666 0.95433 0.97039 1.00345 1.22421 0.96385 0.87087 0.99277 0.92942 0.95054 0.88909 0.93190 0.91883 0.95282 0.92118 0.84308 0.84803 0.85204 0.85307 0.91987 0.95692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.35 55.43 0.63 -24.21 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.87 8.56 -34.44 -0.29 -14.16 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.06 1.34 2.26 -91.69 -0.21 1.13 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.55 5.02 -26.61 -0.13 -2.69 16 12 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 13 C 0.07 1.13 5.06 -3.83 -0.02 1.11 16 14 N -0.51 -9.15 4.62 -171.13 -0.79 -9.94 16 15 C 0.10 1.56 4.69 -83.74 -0.39 1.17 16 16 C -0.07 -1.02 9.97 -39.39 -0.39 -1.41 16 17 C -0.15 -1.85 10.02 -39.54 -0.40 -2.24 16 18 C 0.08 1.04 7.30 -39.42 -0.29 0.75 16 19 F -0.15 -1.93 17.27 2.25 0.04 -1.89 16 20 C -0.14 -1.87 10.02 -39.54 -0.40 -2.27 16 21 C -0.12 -1.79 8.74 -39.39 -0.34 -2.13 16 22 C 0.07 1.52 4.44 -3.84 -0.02 1.50 16 23 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.03 0.48 7.15 -51.93 -0.37 0.11 16 29 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.13 1.80 7.13 -52.49 -0.37 1.43 16 34 H 0.06 1.30 8.11 -51.93 -0.42 0.88 16 35 H 0.02 0.52 7.79 -51.93 -0.40 0.11 16 LS Contribution 288.80 15.07 4.35 4.35 Total: -1.00 -27.32 288.80 -8.74 -36.07 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.81 Total: -0.35 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -3.14 Total: -19.94 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.16 Total: -34.15 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.32 -8.74 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259424872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.396 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds