Wall clock time and date at job start Mon Mar 30 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48499 * 109.47111 * 240.00159 * 3 2 1 5 5 H 1.48497 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47117 * 120.00154 * 3 2 1 7 7 C 1.37871 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00177 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49828 * 299.92802 * 9 7 2 11 11 C 1.53119 * 109.50041 * 60.00087 * 9 7 2 12 12 C 1.53115 * 109.16086 * 177.59710 * 11 9 7 13 13 C 1.53045 * 109.27971 * 302.34662 * 12 11 9 14 14 N 1.46848 * 109.51848 * 59.17700 * 13 12 11 15 15 C 1.39825 * 110.99705 * 174.16010 * 14 13 12 16 16 C 1.38875 * 120.05080 * 235.77005 * 15 14 13 17 17 C 1.38126 * 119.94918 * 179.74124 * 16 15 14 18 18 C 1.38463 * 120.04734 * 0.53362 * 17 16 15 19 19 F 1.35104 * 119.95015 * 179.69444 * 18 17 16 20 20 C 1.38461 * 120.09901 * 359.72547 * 18 17 16 21 21 C 1.38118 * 120.05046 * 0.02562 * 20 18 17 22 22 C 1.46843 * 111.20173 * 298.25870 * 14 13 12 23 23 H 0.97002 * 120.00482 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.52412 * 57.69321 * 11 9 7 25 25 H 1.08997 * 109.57552 * 297.53515 * 11 9 7 26 26 H 1.08998 * 109.50305 * 182.40603 * 12 11 9 27 27 H 1.08997 * 109.53939 * 62.30582 * 12 11 9 28 28 H 1.09000 * 109.46198 * 299.16264 * 13 12 11 29 29 H 1.08992 * 109.45165 * 179.18562 * 13 12 11 30 30 H 1.08002 * 120.02251 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.97415 * 180.23806 * 17 16 15 32 32 H 1.08007 * 119.97423 * 179.97438 * 20 18 17 33 33 H 1.08002 * 120.02424 * 179.97438 * 21 20 18 34 34 H 1.08999 * 109.46355 * 181.76034 * 22 14 13 35 35 H 1.09001 * 109.45931 * 301.72798 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6256 -2.5582 0.8902 11 6 0.3701 -2.5808 -1.2502 12 6 -0.3456 -3.9342 -1.2731 13 6 0.6946 -5.0564 -1.2417 14 7 1.5112 -4.9347 -0.0274 15 6 2.3846 -6.0192 0.0999 16 6 2.3688 -6.7932 1.2528 17 6 3.2288 -7.8673 1.3741 18 6 4.1137 -8.1658 0.3518 19 9 4.9582 -9.2131 0.4751 20 6 4.1349 -7.3921 -0.7963 21 6 3.2732 -6.3203 -0.9240 22 6 2.2449 -3.6628 -0.0061 23 1 -0.4851 0.8400 -0.0004 24 1 0.9909 -2.4819 -2.1407 25 1 -0.3678 -1.7788 -1.2298 26 1 -0.9413 -4.0155 -2.1822 27 1 -0.9966 -4.0171 -0.4028 28 1 1.3361 -4.9816 -2.1198 29 1 0.1877 -6.0213 -1.2433 30 1 1.6815 -6.5583 2.0521 31 1 3.2142 -8.4718 2.2689 32 1 4.8263 -7.6265 -1.5922 33 1 3.2904 -5.7168 -1.8195 34 1 2.8642 -3.6158 0.8897 35 1 2.8791 -3.5946 -0.8899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259424872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:06 Heat of formation + Delta-G solvation = -37.532043 kcal Electronic energy + Delta-G solvation = -17911.601466 eV Core-core repulsion = 15015.803640 eV Total energy + Delta-G solvation = -2895.797826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.87076 -41.04349 -38.67885 -35.51397 -33.53779 -32.12478 -31.71687 -29.54908 -26.93550 -25.12273 -24.00477 -23.18822 -22.34578 -20.32248 -18.85366 -18.47724 -17.45407 -17.24722 -16.60111 -16.51314 -15.71601 -15.51910 -15.21066 -14.73289 -14.56241 -14.45776 -14.30623 -13.88105 -13.59818 -13.21779 -13.01039 -12.83180 -12.62402 -12.54782 -12.09928 -11.87741 -11.75173 -11.41344 -10.93633 -10.70137 -10.38280 -10.08372 -9.53796 -9.30264 -8.07357 -6.21553 0.09856 0.26823 1.43150 1.43760 1.51458 2.42948 2.56890 2.93544 3.19912 3.29171 3.81235 3.93852 4.12568 4.19450 4.29596 4.34983 4.44606 4.58243 4.65943 4.73963 4.86099 4.94719 4.98189 5.04884 5.13469 5.16716 5.20547 5.37006 5.49525 5.54793 5.64335 5.79998 5.92224 6.08053 6.18349 6.42152 6.55015 6.89986 7.46437 8.96962 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.005164 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.876547 B = 5421.048276 C = 5838.646849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.053 3.947 10 H -0.001 1.001 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.070 3.930 14 N -0.513 5.513 15 C 0.074 3.926 16 C -0.076 4.076 17 C -0.140 4.140 18 C 0.076 3.924 19 F -0.145 7.145 20 C -0.141 4.141 21 C -0.128 4.128 22 C 0.090 3.910 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.053 0.947 35 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.602 -14.573 -1.405 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.069 0.931 9 C 0.034 3.966 10 H 0.017 0.983 11 C -0.143 4.143 12 C -0.148 4.148 13 C -0.056 4.056 14 N -0.235 5.235 15 C -0.020 4.020 16 C -0.095 4.095 17 C -0.159 4.159 18 C 0.057 3.943 19 F -0.124 7.124 20 C -0.160 4.160 21 C -0.148 4.148 22 C -0.036 4.036 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.162 0.838 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.071 0.929 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.148 -14.473 -1.004 15.089 hybrid contribution 0.942 1.102 -0.613 1.574 sum 5.090 -13.371 -1.617 14.398 Atomic orbital electron populations 1.70014 1.07105 1.27165 1.51008 1.25667 0.95623 1.02163 0.94716 0.85708 0.78456 0.79291 0.78765 1.19705 1.20918 1.19791 1.21457 0.92946 0.92113 1.51111 0.93129 1.18595 0.92924 0.90997 0.94057 0.98272 1.21473 0.99169 0.96305 0.97329 1.21595 0.97380 0.94509 1.01301 1.22105 0.94897 0.99341 0.89272 1.59653 1.23161 1.00800 1.39892 1.19241 0.93914 0.93786 0.95025 1.21079 0.98263 0.93046 0.97113 1.21280 0.95960 0.99054 0.99569 1.17832 0.92395 0.87452 0.96593 1.91477 1.69304 1.55284 1.96338 1.21160 1.01179 0.95792 0.97894 1.21652 0.95549 0.97570 1.00028 1.22028 0.95226 0.87587 0.98732 0.93018 0.95614 0.92178 0.90779 0.92868 0.94549 0.89654 0.83815 0.82249 0.83077 0.85209 0.92858 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.47 11.35 21.44 0.24 -52.22 16 2 C 0.02 0.96 5.30 84.65 0.45 1.41 16 3 Si 0.95 43.33 29.54 68.60 2.03 45.35 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -29.53 8.56 25.60 0.22 -29.31 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 9 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 11 C -0.10 -4.88 5.02 30.67 0.15 -4.73 16 12 C -0.11 -4.06 6.09 30.65 0.19 -3.88 16 13 C 0.07 2.27 5.06 86.33 0.44 2.71 16 14 N -0.51 -18.14 4.62 -695.32 -3.21 -21.35 16 15 C 0.07 2.22 4.69 38.17 0.18 2.40 16 16 C -0.08 -1.97 9.97 22.40 0.22 -1.75 16 17 C -0.14 -3.09 10.02 22.30 0.22 -2.87 16 18 C 0.08 1.79 7.30 22.38 0.16 1.96 16 19 F -0.15 -3.41 17.27 44.97 0.78 -2.64 16 20 C -0.14 -3.27 10.02 22.29 0.22 -3.04 16 21 C -0.13 -3.41 8.74 22.39 0.20 -3.22 16 22 C 0.09 3.76 4.44 86.32 0.38 4.15 16 23 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 24 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.06 3.19 6.15 -2.39 -0.01 3.18 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.04 1.14 7.15 -2.39 -0.02 1.12 16 29 H 0.09 2.38 8.11 -2.39 -0.02 2.36 16 30 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.13 3.40 7.13 -2.91 -0.02 3.38 16 34 H 0.05 2.27 8.11 -2.39 -0.02 2.25 16 35 H 0.02 0.97 7.79 -2.39 -0.02 0.95 16 Total: -1.00 -59.14 288.80 3.91 -55.23 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.07 Total: 9.17 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 3.01 Total: -33.54 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -2.97 Total: -73.58 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -59.14 3.91 -55.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259424872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.700 kcal (2) G-P(sol) polarization free energy of solvation -59.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds