Wall clock time and date at job start Mon Mar 30 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50608 * 59.92371 * 9 7 2 11 11 C 1.53121 * 109.50414 * 299.80360 * 9 7 2 12 12 C 1.53120 * 109.16081 * 182.40361 * 11 9 7 13 13 C 1.53045 * 109.27727 * 57.65743 * 12 11 9 14 14 N 1.46843 * 109.52087 * 300.81903 * 13 12 11 15 15 C 1.39824 * 111.00139 * 185.84169 * 14 13 12 16 16 C 1.38876 * 120.04708 * 235.51686 * 15 14 13 17 17 C 1.38120 * 119.94631 * 179.76845 * 16 15 14 18 18 C 1.38456 * 120.05139 * 0.50230 * 17 16 15 19 19 F 1.35102 * 119.95500 * 179.76982 * 18 17 16 20 20 C 1.38468 * 120.09824 * 359.74652 * 18 17 16 21 21 C 1.38116 * 120.04715 * 0.02562 * 20 18 17 22 22 C 1.46847 * 111.19941 * 61.74146 * 14 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.52436 * 302.30830 * 11 9 7 25 25 H 1.08995 * 109.52492 * 62.49992 * 11 9 7 26 26 H 1.08996 * 109.50728 * 297.71334 * 12 11 9 27 27 H 1.09006 * 109.53719 * 177.61198 * 12 11 9 28 28 H 1.08999 * 109.45810 * 180.80448 * 13 12 11 29 29 H 1.08993 * 109.45996 * 60.83367 * 13 12 11 30 30 H 1.08003 * 120.02835 * 0.02562 * 16 15 14 31 31 H 1.08009 * 119.97427 * 180.27252 * 17 16 15 32 32 H 1.08007 * 119.97462 * 180.02562 * 20 18 17 33 33 H 1.08007 * 120.02081 * 180.02562 * 21 20 18 34 34 H 1.09003 * 109.46450 * 178.24006 * 22 14 13 35 35 H 1.09001 * 109.45399 * 58.27246 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6228 -2.5567 -0.8894 11 6 0.3746 -2.5835 1.2522 12 6 -0.3410 -3.9369 1.2748 13 6 0.6990 -5.0591 1.2372 14 7 1.5112 -4.9349 0.0202 15 6 2.3840 -6.0191 -0.1127 16 6 3.7489 -5.8006 -0.2469 17 6 4.6097 -6.8734 -0.3731 18 6 4.1118 -8.1653 -0.3764 19 9 4.9551 -9.2130 -0.5047 20 6 2.7507 -8.3852 -0.2480 21 6 1.8867 -7.3157 -0.1167 22 6 2.2448 -3.6630 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 0.9988 -2.4866 2.1406 25 1 -0.3633 -1.7815 1.2352 26 1 -0.9948 -4.0175 0.4064 27 1 -0.9339 -4.0207 2.1856 28 1 0.1922 -6.0241 1.2387 29 1 1.3436 -4.9862 2.1130 30 1 4.1374 -4.7929 -0.2483 31 1 5.6718 -6.7042 -0.4731 32 1 2.3645 -9.3939 -0.2504 33 1 0.8252 -7.4877 -0.0161 34 1 2.8609 -3.6140 -0.8990 35 1 2.8822 -3.5967 0.8806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259424876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:11 Heat of formation + Delta-G solvation = -22.782828 kcal Electronic energy + Delta-G solvation = -17934.849106 eV Core-core repulsion = 15039.690854 eV Total energy + Delta-G solvation = -2895.158252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.69714 -39.91956 -37.27626 -33.81604 -32.02313 -31.26050 -29.87880 -28.21149 -25.22630 -23.87576 -22.99381 -21.19738 -20.96302 -18.79155 -17.75977 -16.82550 -16.06888 -15.82125 -15.42532 -14.77782 -14.50946 -14.21997 -13.63805 -13.47510 -13.21559 -13.06492 -12.85177 -12.34252 -12.18563 -12.03965 -11.59872 -11.04771 -10.98897 -10.76653 -10.62662 -10.23885 -9.96141 -9.66512 -9.36328 -9.14298 -8.99156 -8.77643 -8.36158 -7.41246 -6.04673 -4.11473 1.34909 1.35448 3.28591 3.33731 3.35804 3.67965 4.20233 4.42715 4.46443 4.84600 4.95640 5.25584 5.35248 5.43177 5.48548 5.61736 5.76544 5.90105 5.97948 6.06749 6.20274 6.26832 6.32167 6.34125 6.42323 6.53814 6.61006 6.76959 6.93627 7.08975 7.30153 7.43301 7.66899 7.70610 7.95756 8.06224 8.36582 8.91542 9.53438 11.01510 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.005274 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.587765 B = 5307.508460 C = 5972.488523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.036 0.964 11 C -0.113 4.113 12 C -0.121 4.121 13 C 0.066 3.934 14 N -0.488 5.488 15 C 0.121 3.879 16 C -0.148 4.148 17 C -0.124 4.124 18 C 0.050 3.950 19 F -0.150 7.150 20 C -0.128 4.128 21 C -0.124 4.124 22 C 0.060 3.940 23 H 0.261 0.739 24 H 0.033 0.967 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.357 -12.519 1.659 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.054 0.946 11 C -0.151 4.151 12 C -0.159 4.159 13 C -0.059 4.059 14 N -0.201 5.201 15 C 0.021 3.979 16 C -0.169 4.169 17 C -0.143 4.143 18 C 0.029 3.971 19 F -0.129 7.129 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.065 4.065 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.829 -12.338 1.283 12.723 hybrid contribution 1.117 0.733 0.474 1.418 sum 3.946 -11.605 1.757 12.383 Atomic orbital electron populations 1.69872 1.05877 1.26613 1.50229 1.24923 0.94838 0.99013 0.94915 0.86661 0.79616 0.83128 0.78613 1.21264 1.20316 1.20251 1.21048 0.92812 0.90457 1.51356 0.92751 1.18702 0.92555 0.90181 0.95054 0.94602 1.21698 1.00171 0.94713 0.98535 1.21745 0.97088 0.96244 1.00773 1.22194 0.95425 0.99680 0.88580 1.59060 1.22692 1.02152 1.36237 1.19304 0.90704 0.91662 0.96209 1.21345 0.92082 0.99728 1.03766 1.20976 1.00637 0.90856 1.01867 1.17559 0.87803 0.83809 1.07879 1.91446 1.70938 1.56506 1.93991 1.20916 0.91453 0.99977 1.02395 1.20651 0.99856 0.90422 1.03569 1.22585 0.96939 0.87208 0.99816 0.92884 0.94833 0.88787 0.91820 0.92839 0.91481 0.94475 0.84172 0.85151 0.85128 0.84990 0.91284 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 11.37 55.43 0.63 -23.95 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.65 8.56 -34.44 -0.29 -13.94 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.29 2.26 -91.69 -0.21 1.08 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.54 5.03 -26.61 -0.13 -2.67 16 12 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 13 C 0.07 1.09 5.26 -3.83 -0.02 1.07 16 14 N -0.49 -8.75 4.70 -171.13 -0.80 -9.56 16 15 C 0.12 1.93 5.65 -83.74 -0.47 1.46 16 16 C -0.15 -2.24 8.82 -39.39 -0.35 -2.59 16 17 C -0.12 -1.69 10.02 -39.54 -0.40 -2.09 16 18 C 0.05 0.68 7.30 -39.42 -0.29 0.40 16 19 F -0.15 -2.07 17.26 2.25 0.04 -2.03 16 20 C -0.13 -1.64 10.02 -39.54 -0.40 -2.03 16 21 C -0.12 -1.72 9.16 -39.39 -0.36 -2.08 16 22 C 0.06 1.21 3.37 -3.83 -0.01 1.19 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.94 6.71 -51.93 -0.35 0.60 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.14 2.11 5.80 -52.48 -0.30 1.81 16 31 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.13 1.62 7.15 -52.48 -0.38 1.25 16 34 H 0.07 1.37 6.97 -51.93 -0.36 1.01 16 35 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 LS Contribution 284.45 15.07 4.29 4.29 Total: -1.00 -27.10 284.45 -8.67 -35.77 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.61 Total: 0.72 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.19 Total: -20.92 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.17 Total: -33.50 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.10 -8.67 -35.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259424876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.990 kcal (2) G-P(sol) polarization free energy of solvation -27.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds