Wall clock time and date at job start Mon Mar 30 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50608 * 59.92371 * 9 7 2 11 11 C 1.53121 * 109.50414 * 299.80360 * 9 7 2 12 12 C 1.53120 * 109.16081 * 182.40361 * 11 9 7 13 13 C 1.53045 * 109.27727 * 57.65743 * 12 11 9 14 14 N 1.46843 * 109.52087 * 300.81903 * 13 12 11 15 15 C 1.39824 * 111.00139 * 185.84169 * 14 13 12 16 16 C 1.38876 * 120.04708 * 235.51686 * 15 14 13 17 17 C 1.38120 * 119.94631 * 179.76845 * 16 15 14 18 18 C 1.38456 * 120.05139 * 0.50230 * 17 16 15 19 19 F 1.35102 * 119.95500 * 179.76982 * 18 17 16 20 20 C 1.38468 * 120.09824 * 359.74652 * 18 17 16 21 21 C 1.38116 * 120.04715 * 0.02562 * 20 18 17 22 22 C 1.46847 * 111.19941 * 61.74146 * 14 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.52436 * 302.30830 * 11 9 7 25 25 H 1.08995 * 109.52492 * 62.49992 * 11 9 7 26 26 H 1.08996 * 109.50728 * 297.71334 * 12 11 9 27 27 H 1.09006 * 109.53719 * 177.61198 * 12 11 9 28 28 H 1.08999 * 109.45810 * 180.80448 * 13 12 11 29 29 H 1.08993 * 109.45996 * 60.83367 * 13 12 11 30 30 H 1.08003 * 120.02835 * 0.02562 * 16 15 14 31 31 H 1.08009 * 119.97427 * 180.27252 * 17 16 15 32 32 H 1.08007 * 119.97462 * 180.02562 * 20 18 17 33 33 H 1.08007 * 120.02081 * 180.02562 * 21 20 18 34 34 H 1.09003 * 109.46450 * 178.24006 * 22 14 13 35 35 H 1.09001 * 109.45399 * 58.27246 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6228 -2.5567 -0.8894 11 6 0.3746 -2.5835 1.2522 12 6 -0.3410 -3.9369 1.2748 13 6 0.6990 -5.0591 1.2372 14 7 1.5112 -4.9349 0.0202 15 6 2.3840 -6.0191 -0.1127 16 6 3.7489 -5.8006 -0.2469 17 6 4.6097 -6.8734 -0.3731 18 6 4.1118 -8.1653 -0.3764 19 9 4.9551 -9.2130 -0.5047 20 6 2.7507 -8.3852 -0.2480 21 6 1.8867 -7.3157 -0.1167 22 6 2.2448 -3.6630 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 0.9988 -2.4866 2.1406 25 1 -0.3633 -1.7815 1.2352 26 1 -0.9948 -4.0175 0.4064 27 1 -0.9339 -4.0207 2.1856 28 1 0.1922 -6.0241 1.2387 29 1 1.3436 -4.9862 2.1130 30 1 4.1374 -4.7929 -0.2483 31 1 5.6718 -6.7042 -0.4731 32 1 2.3645 -9.3939 -0.2504 33 1 0.8252 -7.4877 -0.0161 34 1 2.8609 -3.6140 -0.8990 35 1 2.8822 -3.5967 0.8806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259424876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:10 Heat of formation + Delta-G solvation = -36.683209 kcal Electronic energy + Delta-G solvation = -17935.451872 eV Core-core repulsion = 15039.690854 eV Total energy + Delta-G solvation = -2895.761017 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.77003 -41.20320 -38.63575 -35.55077 -33.63017 -32.54443 -31.43378 -29.47114 -27.07397 -25.30474 -24.34377 -22.57549 -22.30353 -20.43525 -19.00233 -18.40663 -17.43206 -17.22712 -16.50196 -16.49807 -15.86504 -15.65282 -14.96813 -14.79420 -14.55678 -14.52787 -14.37752 -13.77612 -13.70000 -13.28366 -12.92228 -12.83352 -12.70490 -12.55377 -11.95553 -11.82266 -11.77940 -11.41948 -11.00299 -10.79889 -10.44886 -10.33633 -10.05501 -8.66433 -8.09046 -6.22960 0.23006 0.29609 1.43086 1.43653 1.51199 2.41838 2.56426 2.95035 3.18877 3.39098 3.77763 3.96042 4.07504 4.20334 4.24447 4.32971 4.45094 4.51761 4.61529 4.73944 4.82473 4.91269 4.97675 5.00786 5.12580 5.20949 5.22923 5.25422 5.40325 5.50880 5.62789 5.83386 5.94062 6.05264 6.16659 6.39302 6.40180 6.88298 7.45160 8.95683 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.005274 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.587765 B = 5307.508460 C = 5972.488523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.953 3.047 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.051 3.949 10 H -0.002 1.002 11 C -0.107 4.107 12 C -0.113 4.113 13 C 0.068 3.932 14 N -0.498 5.498 15 C 0.099 3.901 16 C -0.160 4.160 17 C -0.124 4.124 18 C 0.045 3.955 19 F -0.150 7.150 20 C -0.120 4.120 21 C -0.119 4.119 22 C 0.078 3.922 23 H 0.261 0.739 24 H 0.027 0.973 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.064 0.936 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 -14.282 2.105 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.210 1.210 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.016 0.984 11 C -0.145 4.145 12 C -0.150 4.150 13 C -0.056 4.056 14 N -0.212 5.212 15 C 0.000 4.000 16 C -0.181 4.181 17 C -0.144 4.144 18 C 0.025 3.975 19 F -0.129 7.129 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.049 4.049 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.150 0.850 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.403 -14.125 1.729 14.632 hybrid contribution 0.975 1.206 0.315 1.583 sum 4.378 -12.919 2.043 13.793 Atomic orbital electron populations 1.70018 1.07144 1.27192 1.50977 1.25681 0.95625 1.02228 0.94695 0.85694 0.78436 0.79219 0.78798 1.21022 1.19622 1.19776 1.21448 0.93063 0.91950 1.51140 0.92822 1.18617 0.92946 0.91142 0.94050 0.98417 1.21502 0.99239 0.96425 0.97365 1.21640 0.97372 0.94391 1.01643 1.22236 0.94874 1.00308 0.88212 1.59043 1.23191 1.01644 1.37323 1.19428 0.90782 0.91866 0.97917 1.21342 0.92260 0.99914 1.04554 1.21130 1.01430 0.90578 1.01219 1.17744 0.88379 0.83756 1.07596 1.91452 1.71033 1.56412 1.93959 1.21207 0.90817 1.01126 1.00725 1.20835 1.00986 0.89471 1.02676 1.22189 0.95751 0.87445 0.99496 0.93021 0.95464 0.92105 0.92723 0.90299 0.88115 0.94324 0.84960 0.83444 0.82205 0.83126 0.91786 0.94824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.14 11.37 21.45 0.24 -51.90 16 2 C 0.02 0.92 5.30 84.66 0.45 1.37 16 3 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.54 -29.09 8.56 25.60 0.22 -28.87 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.05 2.54 2.26 -11.49 -0.03 2.51 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.11 -4.92 5.03 30.67 0.15 -4.77 16 12 C -0.11 -4.02 6.09 30.65 0.19 -3.84 16 13 C 0.07 2.12 5.26 86.33 0.45 2.58 16 14 N -0.50 -17.41 4.70 -695.32 -3.27 -20.68 16 15 C 0.10 2.99 5.65 38.17 0.22 3.20 16 16 C -0.16 -4.65 8.82 22.39 0.20 -4.45 16 17 C -0.12 -3.15 10.02 22.29 0.22 -2.93 16 18 C 0.05 1.12 7.30 22.38 0.16 1.28 16 19 F -0.15 -3.72 17.26 44.97 0.78 -2.95 16 20 C -0.12 -2.63 10.02 22.30 0.22 -2.41 16 21 C -0.12 -2.92 9.16 22.39 0.21 -2.71 16 22 C 0.08 3.16 3.37 86.33 0.29 3.45 16 23 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 24 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.06 3.19 6.17 -2.39 -0.01 3.18 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.10 2.48 6.71 -2.39 -0.02 2.46 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.13 3.99 5.80 -2.91 -0.02 3.97 16 31 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.15 3.09 7.15 -2.91 -0.02 3.07 16 34 H 0.06 2.62 6.97 -2.39 -0.02 2.60 16 35 H 0.03 1.36 7.75 -2.39 -0.02 1.34 16 Total: -1.00 -59.16 284.45 3.81 -55.35 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.08 Total: 10.78 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 2.96 Total: -35.58 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -3.03 Total: -72.58 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -59.16 3.81 -55.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259424876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.666 kcal (2) G-P(sol) polarization free energy of solvation -59.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds