Wall clock time and date at job start Mon Mar 30 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36933 * 120.00128 * 2 1 4 4 H 1.08000 * 120.00157 * 203.08844 * 3 2 1 5 5 C 1.38815 * 120.00056 * 23.09532 * 3 2 1 6 6 N 1.31615 * 119.99776 * 12.87651 * 5 3 2 7 7 Si 1.86800 * 119.99926 * 192.88357 * 5 3 2 8 8 H 1.48495 * 109.47513 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47039 * 120.00106 * 7 5 3 10 10 H 1.48508 * 109.47095 * 239.99450 * 7 5 3 11 11 C 1.46504 * 119.99992 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.70676 * 180.53624 * 11 2 1 13 13 C 1.53333 * 109.67963 * 59.99912 * 11 2 1 14 14 C 1.52727 * 108.40811 * 170.38228 * 13 11 2 15 15 C 1.50727 * 110.54368 * 51.12526 * 14 13 11 16 16 C 1.38934 * 117.70619 * 162.57358 * 15 14 13 17 17 C 1.37887 * 120.57944 * 179.38501 * 16 15 14 18 18 C 1.38488 * 119.74663 * 0.03968 * 17 16 15 19 19 F 1.35100 * 120.14555 * 180.13996 * 18 17 16 20 20 C 1.38159 * 119.71335 * 0.11075 * 18 17 16 21 21 C 1.37677 * 122.56803 * 342.19591 * 15 14 13 22 22 C 1.50635 * 122.56051 * 0.75603 * 21 15 14 23 23 H 1.09001 * 109.47176 * 275.12070 * 1 2 3 24 24 H 1.09005 * 109.47147 * 35.12017 * 1 2 3 25 25 H 1.09002 * 109.47464 * 155.11743 * 1 2 3 26 26 H 0.97003 * 120.00063 * 180.02562 * 6 5 3 27 27 H 1.08996 * 109.67839 * 290.12148 * 13 11 2 28 28 H 1.08993 * 109.68153 * 50.64042 * 13 11 2 29 29 H 1.09003 * 109.25231 * 171.43289 * 14 13 11 30 30 H 1.09003 * 109.25364 * 290.85437 * 14 13 11 31 31 H 1.07997 * 119.71110 * 359.37674 * 16 15 14 32 32 H 1.07999 * 120.13000 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.73544 * 179.97438 * 20 18 17 34 34 H 1.09003 * 109.24804 * 221.92048 * 22 21 15 35 35 H 1.08996 * 109.25403 * 102.49518 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1648 1.2233 -0.3668 5 6 1.5391 2.3399 0.4716 6 7 0.4121 2.2593 1.1467 7 14 2.3167 4.0071 0.1477 8 1 3.5707 3.8265 -0.6268 9 1 1.3727 4.8515 -0.6276 10 1 2.6252 4.6691 1.4409 11 6 2.1975 -1.2688 -0.0006 12 1 3.2699 -1.0740 0.0091 13 6 1.8305 -2.0763 -1.2513 14 6 2.7776 -3.2704 -1.3494 15 6 2.8126 -4.0264 -0.0459 16 6 3.3159 -5.3212 -0.0634 17 6 3.3871 -6.0619 1.0974 18 6 2.9524 -5.5114 2.2915 19 9 3.0210 -6.2289 3.4342 20 6 2.4488 -4.2250 2.3093 21 6 2.3762 -3.4796 1.1399 22 6 1.8118 -2.0859 1.2308 23 1 -0.3633 0.0917 1.0236 24 1 -0.3634 0.8406 -0.5912 25 1 -0.3634 -0.9323 -0.4324 26 1 -0.0148 3.0657 1.4759 27 1 0.8022 -2.4289 -1.1718 28 1 1.9364 -1.4499 -2.1369 29 1 2.4362 -3.9357 -2.1425 30 1 3.7806 -2.9151 -1.5862 31 1 3.6544 -5.7514 -0.9944 32 1 3.7800 -7.0677 1.0755 33 1 2.1094 -3.7954 3.2403 34 1 2.2028 -1.5974 2.1233 35 1 0.7254 -2.1418 1.2992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259602357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:21 Heat of formation + Delta-G solvation = -26.145243 kcal Electronic energy + Delta-G solvation = -18001.513490 eV Core-core repulsion = 15106.209433 eV Total energy + Delta-G solvation = -2895.304057 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86985 -40.94317 -38.14120 -35.49010 -33.54142 -32.71790 -30.11874 -29.37007 -28.01700 -25.35731 -24.09352 -23.33342 -22.46553 -20.02938 -18.84493 -18.02990 -17.52527 -16.95502 -16.58175 -16.48812 -15.72162 -15.38626 -15.11033 -14.79930 -14.44862 -14.24622 -14.12968 -13.69041 -13.56599 -13.25002 -12.90013 -12.80373 -12.46164 -12.32313 -12.16400 -12.08488 -11.96721 -11.58315 -11.49166 -11.27366 -10.61576 -9.80504 -9.35794 -8.75147 -7.80744 -5.29591 0.21598 0.29494 1.46476 1.47824 1.58138 2.51373 2.62201 3.24645 3.34298 3.54788 3.79060 3.97309 4.00245 4.09138 4.19807 4.27979 4.41092 4.61519 4.66307 4.72204 4.86085 4.92632 4.99073 5.10925 5.12294 5.17767 5.21030 5.30048 5.35213 5.51574 5.56599 5.66303 5.72536 5.73918 6.00878 6.35350 7.17226 7.90111 8.34194 9.22020 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035330 B = 0.005322 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.328474 B = 5259.825784 C = 5575.159903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.610 5.610 3 C -0.260 4.260 4 H 0.071 0.929 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.967 3.033 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.294 1.294 11 C 0.175 3.825 12 H 0.057 0.943 13 C -0.124 4.124 14 C -0.068 4.068 15 C -0.089 4.089 16 C -0.083 4.083 17 C -0.154 4.154 18 C 0.076 3.924 19 F -0.150 7.150 20 C -0.170 4.170 21 C -0.049 4.049 22 C -0.086 4.086 23 H 0.001 0.999 24 H 0.012 0.988 25 H 0.031 0.969 26 H 0.247 0.753 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -16.303 -4.105 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.332 5.332 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.795 3.205 8 H -0.189 1.189 9 H -0.218 1.218 10 H -0.222 1.222 11 C 0.068 3.932 12 H 0.075 0.925 13 C -0.163 4.163 14 C -0.105 4.105 15 C -0.090 4.090 16 C -0.100 4.100 17 C -0.173 4.173 18 C 0.057 3.943 19 F -0.129 7.129 20 C -0.189 4.189 21 C -0.050 4.050 22 C -0.125 4.125 23 H 0.019 0.981 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.177 0.823 33 H 0.143 0.857 34 H 0.069 0.931 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.330 -16.188 -4.006 17.508 hybrid contribution -0.133 1.294 0.870 1.565 sum 5.197 -14.895 -3.136 16.084 Atomic orbital electron populations 1.20453 0.83069 0.95724 0.97340 1.44195 1.01916 1.01271 1.85862 1.19614 0.98571 0.86738 1.34136 0.91116 1.25784 0.98681 1.01848 0.98592 1.70242 1.20891 1.27432 1.40166 0.85202 0.78088 0.80154 0.77009 1.18918 1.21830 1.22169 1.20494 0.95152 0.84667 0.92846 0.92517 1.21948 0.99427 0.96575 0.98362 1.20484 1.00600 0.95767 0.93694 1.20006 0.98734 0.95357 0.94856 1.21350 0.97217 0.92464 0.99015 1.21332 1.02780 1.02366 0.90774 1.17773 1.03242 0.90557 0.82775 1.91456 1.94589 1.77695 1.49170 1.21220 1.03903 0.94008 0.99721 1.19564 0.97686 0.95178 0.92591 1.20916 1.00075 0.91292 1.00250 0.98062 0.96886 0.95048 0.94400 0.92547 0.91807 0.87939 0.89512 0.81524 0.82268 0.85653 0.93112 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.90 7.80 127.77 1.00 9.90 16 2 N -0.61 -30.35 2.83 -702.65 -1.99 -32.34 16 3 C -0.26 -14.29 9.59 84.03 0.81 -13.48 16 4 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 5 C -0.05 -3.06 5.10 84.86 0.43 -2.62 16 6 N -0.94 -56.27 10.71 21.65 0.23 -56.04 16 7 Si 0.97 45.28 29.57 68.60 2.03 47.31 16 8 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 11 C 0.18 6.95 2.62 45.01 0.12 7.06 16 12 H 0.06 2.32 7.84 -2.39 -0.02 2.30 16 13 C -0.12 -3.88 5.05 30.61 0.15 -3.73 16 14 C -0.07 -1.57 5.68 29.77 0.17 -1.40 16 15 C -0.09 -2.24 5.74 -19.82 -0.11 -2.36 16 16 C -0.08 -1.60 9.60 22.35 0.21 -1.39 16 17 C -0.15 -3.17 10.03 22.25 0.22 -2.95 16 18 C 0.08 1.99 7.30 22.31 0.16 2.15 16 19 F -0.15 -4.08 17.27 44.97 0.78 -3.30 16 20 C -0.17 -5.00 9.59 22.40 0.21 -4.79 16 21 C -0.05 -1.51 5.74 -19.87 -0.11 -1.63 16 22 C -0.09 -3.22 5.10 29.74 0.15 -3.06 16 23 H 0.00 0.06 7.34 -2.39 -0.02 0.04 16 24 H 0.01 0.68 7.34 -2.38 -0.02 0.66 16 25 H 0.03 1.32 6.66 -2.39 -0.02 1.31 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.06 1.78 7.07 -2.39 -0.02 1.77 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 29 H 0.10 1.75 8.13 -2.39 -0.02 1.73 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.17 1.97 8.05 -2.91 -0.02 1.95 16 32 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.13 3.69 8.05 -2.91 -0.02 3.67 16 34 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.06 2.51 7.33 -2.39 -0.02 2.49 16 Total: -1.00 -63.77 287.06 5.54 -58.23 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.08 Total: 4.44 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 3.42 Total: -18.29 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.76 Total: -88.38 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -63.77 5.54 -58.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.086 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds