Wall clock time and date at job start Mon Mar 30 2020 07:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36938 * 120.00063 * 2 1 4 4 H 1.07998 * 120.00242 * 203.70671 * 3 2 1 5 5 C 1.38818 * 119.99793 * 23.71368 * 3 2 1 6 6 N 1.31614 * 120.00238 * 11.18716 * 5 3 2 7 7 Si 1.86798 * 119.99828 * 191.18575 * 5 3 2 8 8 H 1.48509 * 109.47018 * 60.00012 * 7 5 3 9 9 H 1.48497 * 109.47251 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47321 * 300.00106 * 7 5 3 11 11 C 1.46493 * 119.99650 * 180.02562 * 2 1 3 12 12 H 1.09008 * 109.67478 * 180.51652 * 11 2 1 13 13 C 1.53325 * 109.71319 * 301.04701 * 11 2 1 14 14 C 1.52723 * 108.41154 * 189.55881 * 13 11 2 15 15 C 1.50642 * 110.59946 * 308.88428 * 14 13 11 16 16 C 1.38929 * 117.73382 * 197.63615 * 15 14 13 17 17 C 1.37892 * 120.58065 * 180.91737 * 16 15 14 18 18 C 1.38487 * 119.74669 * 359.48139 * 17 16 15 19 19 F 1.35098 * 120.13966 * 180.08380 * 18 17 16 20 20 C 1.38159 * 119.71475 * 0.36326 * 18 17 16 21 21 C 1.37678 * 122.54750 * 18.01419 * 15 14 13 22 22 C 1.50638 * 122.55424 * 358.85703 * 21 15 14 23 23 H 1.09003 * 109.47046 * 274.65191 * 1 2 3 24 24 H 1.09006 * 109.46659 * 34.64834 * 1 2 3 25 25 H 1.08998 * 109.47371 * 154.64379 * 1 2 3 26 26 H 0.96996 * 120.00270 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.67356 * 309.29067 * 13 11 2 28 28 H 1.08998 * 109.67477 * 69.82847 * 13 11 2 29 29 H 1.08997 * 109.24803 * 188.60196 * 14 13 11 30 30 H 1.08996 * 109.25379 * 69.17656 * 14 13 11 31 31 H 1.08005 * 119.70662 * 0.63870 * 16 15 14 32 32 H 1.07997 * 120.12320 * 179.73937 * 17 16 15 33 33 H 1.07998 * 119.73677 * 179.73728 * 20 18 17 34 34 H 1.09006 * 109.25101 * 138.38916 * 22 21 15 35 35 H 1.09004 * 109.25442 * 257.81402 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1614 1.2254 -0.3760 5 6 1.5436 2.3373 0.4835 6 7 0.4057 2.2561 1.1400 7 14 2.3428 4.0021 0.2023 8 1 2.4711 4.2496 -1.2563 9 1 1.5025 5.0639 0.8120 10 1 3.6898 4.0165 0.8272 11 6 2.1974 -1.2687 -0.0006 12 1 3.2699 -1.0734 0.0088 13 6 1.8113 -2.0893 1.2357 14 6 2.7562 -3.2850 1.3353 15 6 2.8115 -4.0275 0.0257 16 6 3.3099 -5.3242 0.0382 17 6 3.4044 -6.0507 -1.1300 18 6 2.9891 -5.4874 -2.3250 19 9 3.0766 -6.1926 -3.4739 20 6 2.4904 -4.1990 -2.3380 21 6 2.3977 -3.4667 -1.1616 22 6 1.8320 -2.0732 -1.2463 23 1 -0.3633 0.0833 1.0243 24 1 -0.3633 0.8455 -0.5843 25 1 -0.3634 -0.9286 -0.4401 26 1 -0.0180 3.0606 1.4775 27 1 1.9045 -1.4724 2.1294 28 1 0.7842 -2.4405 1.1369 29 1 2.4021 -3.9587 2.1156 30 1 3.7555 -2.9331 1.5914 31 1 3.6303 -5.7655 0.9705 32 1 3.7969 -7.0567 -1.1123 33 1 2.1704 -3.7578 -3.2703 34 1 2.2354 -1.5744 -2.1275 35 1 0.7468 -2.1304 -1.3317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259602358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:26 Heat of formation + Delta-G solvation = -11.039710 kcal Electronic energy + Delta-G solvation = -17985.840463 eV Core-core repulsion = 15091.191431 eV Total energy + Delta-G solvation = -2894.649032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.80455 -39.77111 -36.58077 -33.86562 -32.34554 -30.95143 -28.83568 -27.99337 -25.98284 -23.75709 -22.74195 -22.24899 -20.99632 -18.59722 -17.08874 -16.73348 -16.29649 -15.57482 -15.41846 -15.01301 -14.17177 -13.96323 -13.62863 -13.49163 -13.16325 -12.84210 -12.68337 -12.20704 -12.15032 -11.93624 -11.20036 -11.05076 -10.89297 -10.78963 -10.56894 -10.36602 -10.24315 -10.04963 -9.81297 -9.68098 -8.72693 -8.54049 -8.27108 -6.73052 -5.70910 -3.18095 1.26980 1.33419 3.39373 3.44844 3.45589 3.67021 4.32626 4.49185 4.78141 4.89905 5.01896 5.26949 5.32359 5.40291 5.46760 5.57111 5.74671 5.89578 5.93449 5.98158 6.07749 6.20980 6.27341 6.29573 6.38794 6.46868 6.54052 6.78977 6.86591 6.93995 7.02164 7.10776 7.40254 7.76001 7.81912 8.42168 9.25553 9.88599 10.38176 11.33686 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038451 B = 0.005168 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.021009 B = 5416.738050 C = 5665.812775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.595 5.595 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.181 3.819 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.078 4.078 15 C -0.082 4.082 16 C -0.094 4.094 17 C -0.165 4.165 18 C 0.087 3.913 19 F -0.147 7.147 20 C -0.158 4.158 21 C -0.030 4.030 22 C -0.102 4.102 23 H 0.030 0.970 24 H 0.040 0.960 25 H -0.002 1.002 26 H 0.252 0.748 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 -14.043 -2.433 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.316 5.316 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.073 3.927 12 H 0.084 0.916 13 C -0.172 4.172 14 C -0.115 4.115 15 C -0.082 4.082 16 C -0.112 4.112 17 C -0.183 4.183 18 C 0.068 3.932 19 F -0.125 7.125 20 C -0.176 4.176 21 C -0.030 4.030 22 C -0.141 4.141 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.092 0.908 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.752 -13.884 -2.403 14.581 hybrid contribution 0.354 0.698 -0.384 0.872 sum 4.107 -13.186 -2.787 14.089 Atomic orbital electron populations 1.20774 0.82781 0.95321 0.99375 1.43914 1.01761 1.00135 1.85801 1.19181 0.98679 0.85687 1.34976 0.91524 1.25030 0.97787 0.98512 0.98175 1.70045 1.18707 1.27361 1.39175 0.86344 0.78533 0.83854 0.77838 1.21114 1.21657 1.20954 1.20263 0.96152 0.85883 0.90435 0.91639 1.22153 0.98256 0.95468 1.01346 1.20510 1.01042 0.97098 0.92876 1.19847 0.98704 0.94134 0.95531 1.21017 0.98780 0.93912 0.97535 1.20954 1.04512 1.01197 0.91682 1.17591 1.02771 0.91016 0.81819 1.91464 1.94396 1.78448 1.48228 1.21200 1.03365 0.93250 0.99832 1.19732 0.95728 0.96393 0.91193 1.21193 1.01021 0.89970 1.01886 0.95155 0.94109 0.98310 0.93737 0.90970 0.92546 0.91349 0.90643 0.85413 0.85304 0.85089 0.90755 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.19 59.85 0.49 4.40 16 2 N -0.59 -14.49 2.83 -173.44 -0.49 -14.98 16 3 C -0.26 -6.91 9.59 -15.06 -0.14 -7.05 16 4 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.16 10.66 55.49 0.59 -25.57 16 7 Si 0.90 21.66 29.57 -169.99 -5.03 16.63 16 8 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.18 3.59 2.62 -67.91 -0.18 3.41 16 12 H 0.07 1.33 7.84 -51.92 -0.41 0.93 16 13 C -0.13 -2.33 5.11 -26.70 -0.14 -2.46 16 14 C -0.08 -1.09 5.67 -28.05 -0.16 -1.24 16 15 C -0.08 -1.16 5.74 -104.60 -0.60 -1.76 16 16 C -0.09 -1.14 9.60 -39.45 -0.38 -1.52 16 17 C -0.16 -2.00 10.03 -39.62 -0.40 -2.40 16 18 C 0.09 1.20 7.30 -39.52 -0.29 0.91 16 19 F -0.15 -2.04 17.27 2.25 0.04 -2.00 16 20 C -0.16 -2.25 9.59 -39.38 -0.38 -2.63 16 21 C -0.03 -0.45 5.74 -104.62 -0.60 -1.05 16 22 C -0.10 -1.75 5.10 -28.05 -0.14 -1.89 16 23 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 24 H 0.04 1.06 7.31 -51.93 -0.38 0.68 16 25 H 0.00 -0.03 6.31 -51.93 -0.33 -0.36 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.06 1.00 7.96 -51.93 -0.41 0.59 16 29 H 0.07 0.83 8.12 -51.93 -0.42 0.40 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.13 1.21 8.05 -52.48 -0.42 0.79 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.72 8.05 -52.49 -0.42 1.29 16 34 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 35 H 0.08 1.40 6.37 -51.93 -0.33 1.07 16 LS Contribution 287.03 15.07 4.33 4.33 Total: -1.00 -28.67 287.03 -8.31 -36.97 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.74 Total: -2.08 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -3.00 Total: -13.30 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.10 Total: -40.55 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.67 -8.31 -36.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.933 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds