Wall clock time and date at job start Mon Mar 30 2020 07:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36938 * 120.00063 * 2 1 4 4 H 1.07998 * 120.00242 * 203.70671 * 3 2 1 5 5 C 1.38818 * 119.99793 * 23.71368 * 3 2 1 6 6 N 1.31614 * 120.00238 * 11.18716 * 5 3 2 7 7 Si 1.86798 * 119.99828 * 191.18575 * 5 3 2 8 8 H 1.48509 * 109.47018 * 60.00012 * 7 5 3 9 9 H 1.48497 * 109.47251 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47321 * 300.00106 * 7 5 3 11 11 C 1.46493 * 119.99650 * 180.02562 * 2 1 3 12 12 H 1.09008 * 109.67478 * 180.51652 * 11 2 1 13 13 C 1.53325 * 109.71319 * 301.04701 * 11 2 1 14 14 C 1.52723 * 108.41154 * 189.55881 * 13 11 2 15 15 C 1.50642 * 110.59946 * 308.88428 * 14 13 11 16 16 C 1.38929 * 117.73382 * 197.63615 * 15 14 13 17 17 C 1.37892 * 120.58065 * 180.91737 * 16 15 14 18 18 C 1.38487 * 119.74669 * 359.48139 * 17 16 15 19 19 F 1.35098 * 120.13966 * 180.08380 * 18 17 16 20 20 C 1.38159 * 119.71475 * 0.36326 * 18 17 16 21 21 C 1.37678 * 122.54750 * 18.01419 * 15 14 13 22 22 C 1.50638 * 122.55424 * 358.85703 * 21 15 14 23 23 H 1.09003 * 109.47046 * 274.65191 * 1 2 3 24 24 H 1.09006 * 109.46659 * 34.64834 * 1 2 3 25 25 H 1.08998 * 109.47371 * 154.64379 * 1 2 3 26 26 H 0.96996 * 120.00270 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.67356 * 309.29067 * 13 11 2 28 28 H 1.08998 * 109.67477 * 69.82847 * 13 11 2 29 29 H 1.08997 * 109.24803 * 188.60196 * 14 13 11 30 30 H 1.08996 * 109.25379 * 69.17656 * 14 13 11 31 31 H 1.08005 * 119.70662 * 0.63870 * 16 15 14 32 32 H 1.07997 * 120.12320 * 179.73937 * 17 16 15 33 33 H 1.07998 * 119.73677 * 179.73728 * 20 18 17 34 34 H 1.09006 * 109.25101 * 138.38916 * 22 21 15 35 35 H 1.09004 * 109.25442 * 257.81402 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1614 1.2254 -0.3760 5 6 1.5436 2.3373 0.4835 6 7 0.4057 2.2561 1.1400 7 14 2.3428 4.0021 0.2023 8 1 2.4711 4.2496 -1.2563 9 1 1.5025 5.0639 0.8120 10 1 3.6898 4.0165 0.8272 11 6 2.1974 -1.2687 -0.0006 12 1 3.2699 -1.0734 0.0088 13 6 1.8113 -2.0893 1.2357 14 6 2.7562 -3.2850 1.3353 15 6 2.8115 -4.0275 0.0257 16 6 3.3099 -5.3242 0.0382 17 6 3.4044 -6.0507 -1.1300 18 6 2.9891 -5.4874 -2.3250 19 9 3.0766 -6.1926 -3.4739 20 6 2.4904 -4.1990 -2.3380 21 6 2.3977 -3.4667 -1.1616 22 6 1.8320 -2.0732 -1.2463 23 1 -0.3633 0.0833 1.0243 24 1 -0.3633 0.8455 -0.5843 25 1 -0.3634 -0.9286 -0.4401 26 1 -0.0180 3.0606 1.4775 27 1 1.9045 -1.4724 2.1294 28 1 0.7842 -2.4405 1.1369 29 1 2.4021 -3.9587 2.1156 30 1 3.7555 -2.9331 1.5914 31 1 3.6303 -5.7655 0.9705 32 1 3.7969 -7.0567 -1.1123 33 1 2.1704 -3.7578 -3.2703 34 1 2.2354 -1.5744 -2.1275 35 1 0.7468 -2.1304 -1.3317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259602358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:25 Heat of formation + Delta-G solvation = -25.045761 kcal Electronic energy + Delta-G solvation = -17986.447811 eV Core-core repulsion = 15091.191431 eV Total energy + Delta-G solvation = -2895.256380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.85641 -40.94667 -38.13521 -35.48664 -33.57190 -32.69167 -30.13056 -29.34870 -28.01278 -25.36037 -24.08367 -23.33315 -22.46178 -20.03015 -18.82485 -18.06133 -17.48632 -16.97344 -16.57659 -16.49391 -15.69592 -15.36312 -15.09735 -14.84334 -14.45591 -14.22858 -14.06825 -13.81912 -13.57041 -13.22978 -12.80949 -12.76821 -12.49791 -12.26407 -12.23856 -12.04451 -12.00070 -11.60971 -11.44234 -11.31095 -10.60836 -9.79229 -9.35608 -8.73414 -7.80030 -5.29085 0.22091 0.30190 1.47512 1.49609 1.56030 2.51713 2.62569 3.26594 3.33774 3.55201 3.79130 3.97006 4.00999 4.08771 4.19665 4.27905 4.41452 4.59728 4.68660 4.69384 4.87641 4.91858 4.98899 5.08144 5.11030 5.18252 5.20983 5.28047 5.38712 5.50605 5.55738 5.67154 5.72970 5.75206 6.00962 6.36415 7.18246 7.90703 8.34977 9.22718 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038451 B = 0.005168 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.021009 B = 5416.738050 C = 5665.812775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.611 5.611 3 C -0.264 4.264 4 H 0.068 0.932 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.967 3.033 8 H -0.280 1.280 9 H -0.295 1.295 10 H -0.275 1.275 11 C 0.176 3.824 12 H 0.056 0.944 13 C -0.124 4.124 14 C -0.069 4.069 15 C -0.090 4.090 16 C -0.085 4.085 17 C -0.155 4.155 18 C 0.076 3.924 19 F -0.149 7.149 20 C -0.164 4.164 21 C -0.048 4.048 22 C -0.088 4.088 23 H 0.004 0.996 24 H 0.012 0.988 25 H 0.028 0.972 26 H 0.247 0.753 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.133 0.867 34 H 0.065 0.935 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 -16.137 -2.310 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.086 0.914 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.207 1.207 9 H -0.221 1.221 10 H -0.201 1.201 11 C 0.069 3.931 12 H 0.074 0.926 13 C -0.163 4.163 14 C -0.106 4.106 15 C -0.090 4.090 16 C -0.103 4.103 17 C -0.173 4.173 18 C 0.057 3.943 19 F -0.128 7.128 20 C -0.183 4.183 21 C -0.049 4.049 22 C -0.126 4.126 23 H 0.023 0.977 24 H 0.030 0.970 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.180 0.820 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.160 -16.015 -2.293 16.981 hybrid contribution -0.041 1.251 -0.456 1.332 sum 5.119 -14.764 -2.749 15.866 Atomic orbital electron populations 1.20466 0.83064 0.95519 0.97468 1.44130 1.01902 1.01214 1.86042 1.19517 0.98825 0.87008 1.34090 0.91392 1.25765 0.98532 1.01763 0.98512 1.70214 1.20080 1.27682 1.40514 0.85349 0.77754 0.79671 0.77700 1.20653 1.22078 1.20088 1.20441 0.95132 0.84749 0.92784 0.92559 1.21954 0.99176 0.96385 0.98799 1.20446 1.00401 0.95850 0.93915 1.19943 0.99056 0.95220 0.94798 1.21314 0.97330 0.92642 0.98968 1.21313 1.02901 1.02312 0.90782 1.17760 1.03201 0.90882 0.82446 1.91459 1.94446 1.78373 1.48542 1.21213 1.03660 0.93799 0.99665 1.19528 0.97625 0.95389 0.92375 1.20901 1.00634 0.91179 0.99916 0.97739 0.96957 0.95317 0.94348 0.93388 0.92898 0.88528 0.89846 0.81974 0.82411 0.84867 0.91596 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.93 8.19 127.77 1.05 9.98 16 2 N -0.61 -30.41 2.83 -702.66 -1.99 -32.40 16 3 C -0.26 -14.53 9.59 84.03 0.81 -13.72 16 4 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 5 C -0.05 -2.84 5.13 84.86 0.44 -2.41 16 6 N -0.94 -55.63 10.66 21.65 0.23 -55.40 16 7 Si 0.97 45.15 29.57 68.60 2.03 47.18 16 8 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 9 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 C 0.18 6.99 2.62 45.01 0.12 7.11 16 12 H 0.06 2.31 7.84 -2.38 -0.02 2.29 16 13 C -0.12 -4.28 5.11 30.61 0.16 -4.12 16 14 C -0.07 -1.74 5.67 29.74 0.17 -1.57 16 15 C -0.09 -2.29 5.74 -19.85 -0.11 -2.40 16 16 C -0.08 -1.68 9.60 22.35 0.21 -1.46 16 17 C -0.15 -3.13 10.03 22.25 0.22 -2.90 16 18 C 0.08 1.90 7.30 22.31 0.16 2.06 16 19 F -0.15 -3.83 17.27 44.97 0.78 -3.05 16 20 C -0.16 -4.45 9.59 22.40 0.21 -4.24 16 21 C -0.05 -1.41 5.74 -19.86 -0.11 -1.52 16 22 C -0.09 -3.00 5.10 29.74 0.15 -2.85 16 23 H 0.00 0.24 7.36 -2.39 -0.02 0.22 16 24 H 0.01 0.64 7.31 -2.38 -0.02 0.62 16 25 H 0.03 1.22 6.31 -2.39 -0.02 1.20 16 26 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.84 7.96 -2.39 -0.02 1.83 16 29 H 0.10 1.95 8.12 -2.39 -0.02 1.93 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.16 2.12 8.05 -2.91 -0.02 2.10 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.13 3.41 8.05 -2.91 -0.02 3.39 16 34 H 0.07 2.31 8.12 -2.38 -0.02 2.29 16 35 H 0.07 2.53 6.37 -2.38 -0.02 2.52 16 Total: -1.00 -62.54 287.03 5.59 -56.94 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.08 Total: 4.78 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 3.47 Total: -18.06 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -1.76 Total: -87.80 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -62.54 5.59 -56.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.897 kcal (2) G-P(sol) polarization free energy of solvation -62.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds