Wall clock time and date at job start Mon Mar 30 2020 07:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46893 * 111.00160 * 2 1 4 4 C 1.46904 * 110.99998 * 123.95792 * 2 1 3 5 5 H 1.09001 * 110.34643 * 46.87834 * 4 2 1 6 6 C 1.51373 * 110.30078 * 284.75368 * 4 2 1 7 7 C 1.38460 * 130.37406 * 78.23448 * 6 4 2 8 8 C 1.38328 * 120.19519 * 179.97438 * 7 6 4 9 9 F 1.35109 * 120.05589 * 180.02562 * 8 7 6 10 10 C 1.38477 * 119.88259 * 0.06290 * 8 7 6 11 11 C 1.38053 * 119.91047 * 359.95841 * 10 8 7 12 12 C 1.38242 * 109.75596 * 258.26251 * 6 4 2 13 13 C 1.51381 * 109.75050 * 0.02562 * 12 6 4 14 14 C 1.54336 * 110.30245 * 169.00701 * 4 2 1 15 15 H 1.08999 * 110.82405 * 210.80001 * 14 4 2 16 16 C 1.50708 * 110.82299 * 334.14461 * 14 4 2 17 17 H 1.08008 * 119.99514 * 357.30098 * 16 14 4 18 18 C 1.37876 * 120.00143 * 177.29820 * 16 14 4 19 19 N 1.31512 * 120.00298 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99840 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47079 * 60.00288 * 20 18 16 22 22 H 1.48497 * 109.46805 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47273 * 300.00232 * 20 18 16 24 24 H 1.08997 * 109.46682 * 299.99659 * 1 2 3 25 25 H 1.08993 * 109.47000 * 59.99834 * 1 2 3 26 26 H 1.08999 * 109.46744 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47746 * 190.16524 * 3 2 1 28 28 H 1.08999 * 109.47297 * 310.17039 * 3 2 1 29 29 H 1.09001 * 109.47339 * 70.16342 * 3 2 1 30 30 H 1.07997 * 119.90227 * 359.97438 * 7 6 4 31 31 H 1.07998 * 120.04491 * 179.97438 * 10 8 7 32 32 H 1.07994 * 119.87886 * 180.02562 * 11 10 8 33 33 H 1.08996 * 110.30213 * 223.88337 * 13 12 6 34 34 H 1.08999 * 110.30250 * 101.72548 * 13 12 6 35 35 H 0.96994 * 120.00230 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 1 1.4792 -1.7223 1.2220 6 6 1.8462 0.0264 2.4186 7 6 0.7354 0.2392 3.2173 8 6 0.8382 1.0111 4.3606 9 9 -0.2475 1.2164 5.1382 10 6 2.0554 1.5735 4.7062 11 6 3.1627 1.3616 3.9095 12 6 3.0609 0.5883 2.7647 13 6 4.1093 0.2122 1.7395 14 6 3.5140 -0.9898 0.9757 15 1 3.8182 -1.9303 1.4351 16 6 3.9088 -0.9543 -0.4783 17 1 3.1530 -0.8317 -1.2402 18 6 5.2345 -1.0783 -0.8360 19 7 6.1547 -1.2280 0.0916 20 14 5.7238 -1.0335 -2.6382 21 1 5.3123 0.2645 -3.2308 22 1 7.1963 -1.1857 -2.7552 23 1 5.0520 -2.1429 -3.3613 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.0701 1.3481 -0.1814 28 1 1.5069 1.9482 -0.7853 29 1 1.8002 1.8356 0.9667 30 1 -0.2140 -0.1988 2.9469 31 1 2.1385 2.1769 5.5981 32 1 4.1119 1.8001 4.1797 33 1 5.0363 -0.0765 2.2348 34 1 4.2869 1.0437 1.0576 35 1 7.0874 -1.3148 -0.1599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259639184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:05 Heat of formation + Delta-G solvation = -6.541397 kcal Electronic energy + Delta-G solvation = -18699.037556 eV Core-core repulsion = 15804.583585 eV Total energy + Delta-G solvation = -2894.453970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.61899 -40.10022 -36.54531 -33.82547 -31.94047 -30.75238 -28.43568 -27.03704 -26.22713 -24.73861 -22.46172 -21.74646 -20.31811 -19.25143 -16.78674 -16.42026 -16.05877 -15.37771 -15.08607 -14.75245 -14.50794 -14.13573 -13.87798 -13.38815 -13.11660 -12.68024 -12.18278 -12.03697 -11.78409 -11.50320 -11.36595 -11.16950 -10.88072 -10.80175 -10.64474 -10.40598 -10.27709 -10.03768 -9.29175 -8.85530 -8.63845 -8.38786 -7.88573 -7.50590 -5.97343 -3.95514 1.55243 1.57251 3.37134 3.41841 3.45566 3.94914 4.45370 4.53013 4.79064 4.94142 5.15201 5.34110 5.41935 5.64328 5.67299 5.75717 5.84608 5.91466 6.10151 6.22881 6.23721 6.31554 6.37059 6.39687 6.55481 6.66315 6.77750 6.91672 6.96407 7.24039 7.29441 7.46550 7.67469 7.82017 7.88709 8.07174 8.51331 9.15674 9.67993 11.13694 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.007371 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.920921 B = 3797.651132 C = 4351.818334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.499 5.499 3 C 0.022 3.978 4 C 0.124 3.876 5 H 0.074 0.926 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.072 3.928 9 F -0.150 7.150 10 C -0.154 4.154 11 C -0.096 4.096 12 C -0.077 4.077 13 C -0.070 4.070 14 C 0.064 3.936 15 H 0.041 0.959 16 C -0.491 4.491 17 H 0.083 0.917 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.278 1.278 24 H 0.017 0.983 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.016 0.984 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.661 4.576 5.124 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.220 5.220 3 C -0.126 4.126 4 C 0.016 3.984 5 H 0.093 0.907 6 C -0.102 4.102 7 C -0.159 4.159 8 C 0.053 3.947 9 F -0.129 7.129 10 C -0.174 4.174 11 C -0.115 4.115 12 C -0.078 4.078 13 C -0.107 4.107 14 C 0.045 3.955 15 H 0.059 0.941 16 C -0.529 4.529 17 H 0.101 0.899 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.204 1.204 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.355 4.322 4.695 9.737 hybrid contribution -0.230 0.576 0.169 0.643 sum -7.584 4.898 4.864 10.255 Atomic orbital electron populations 1.22481 0.89864 1.01191 0.99667 1.62281 1.05019 1.14037 1.40681 1.22574 1.03533 0.88197 0.98319 1.21580 1.00800 0.93867 0.82186 0.90742 1.21534 0.92540 0.98552 0.97551 1.20602 0.99561 1.01174 0.94523 1.17466 0.83518 1.01958 0.91804 1.91441 1.53521 1.93883 1.74038 1.20908 0.91827 1.02974 1.01642 1.20554 0.97907 0.98788 0.94210 1.21538 0.97449 0.93997 0.94826 1.21502 0.95389 1.00313 0.93516 1.19428 0.85508 0.93715 0.96825 0.94081 1.21173 0.92281 1.48062 0.91389 0.89932 1.25027 0.96895 0.95571 0.96943 1.69957 1.00871 1.50632 1.32325 0.86672 0.76869 0.78575 0.85899 1.20418 1.21799 1.20402 0.96441 0.92185 0.92048 0.88486 0.93388 0.96554 0.85942 0.85475 0.85661 0.90917 0.90441 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.36 60.07 0.56 0.82 16 2 N -0.50 -9.47 3.39 -243.32 -0.83 -10.29 16 3 C 0.02 0.40 8.05 60.06 0.48 0.88 16 4 C 0.12 2.46 2.92 -67.83 -0.20 2.26 16 5 H 0.07 1.44 8.00 -51.93 -0.42 1.03 16 6 C -0.10 -1.83 3.86 -104.21 -0.40 -2.23 16 7 C -0.14 -2.34 9.02 -39.47 -0.36 -2.69 16 8 C 0.07 1.16 7.30 -39.46 -0.29 0.88 16 9 F -0.15 -2.38 17.27 2.25 0.04 -2.34 16 10 C -0.15 -2.35 10.03 -39.56 -0.40 -2.75 16 11 C -0.10 -1.57 10.04 -39.55 -0.40 -1.97 16 12 C -0.08 -1.45 5.26 -104.18 -0.55 -2.00 16 13 C -0.07 -1.50 4.79 -26.84 -0.13 -1.63 16 14 C 0.06 1.48 2.77 -90.36 -0.25 1.23 16 15 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.49 -12.40 6.69 -34.44 -0.23 -12.63 16 17 H 0.08 2.12 6.57 -52.48 -0.35 1.77 16 18 C 0.06 1.47 5.35 -17.82 -0.10 1.38 16 19 N -0.90 -24.54 12.55 55.43 0.70 -23.84 16 20 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.02 0.26 6.43 -51.93 -0.33 -0.07 16 25 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 26 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 27 H 0.10 2.01 4.65 -51.93 -0.24 1.77 16 28 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 29 H 0.02 0.30 6.14 -51.93 -0.32 -0.02 16 30 H 0.12 1.87 7.58 -52.49 -0.40 1.47 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.07 1.68 7.98 -51.93 -0.41 1.26 16 34 H 0.08 1.74 6.00 -51.93 -0.31 1.43 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -26.37 279.65 -7.58 -33.96 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.44 Total: 1.04 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.24 Total: -18.47 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.13 Total: -34.14 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.37 -7.58 -33.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.415 kcal (2) G-P(sol) polarization free energy of solvation -26.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds