Wall clock time and date at job start Mon Mar 30 2020 07:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46893 * 111.00160 * 2 1 4 4 C 1.46904 * 110.99998 * 123.95792 * 2 1 3 5 5 H 1.09001 * 110.34643 * 46.87834 * 4 2 1 6 6 C 1.51373 * 110.30078 * 284.75368 * 4 2 1 7 7 C 1.38460 * 130.37406 * 78.23448 * 6 4 2 8 8 C 1.38328 * 120.19519 * 179.97438 * 7 6 4 9 9 F 1.35109 * 120.05589 * 180.02562 * 8 7 6 10 10 C 1.38477 * 119.88259 * 0.06290 * 8 7 6 11 11 C 1.38053 * 119.91047 * 359.95841 * 10 8 7 12 12 C 1.38242 * 109.75596 * 258.26251 * 6 4 2 13 13 C 1.51381 * 109.75050 * 0.02562 * 12 6 4 14 14 C 1.54336 * 110.30245 * 169.00701 * 4 2 1 15 15 H 1.08999 * 110.82405 * 210.80001 * 14 4 2 16 16 C 1.50708 * 110.82299 * 334.14461 * 14 4 2 17 17 H 1.08008 * 119.99514 * 357.30098 * 16 14 4 18 18 C 1.37876 * 120.00143 * 177.29820 * 16 14 4 19 19 N 1.31512 * 120.00298 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99840 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47079 * 60.00288 * 20 18 16 22 22 H 1.48497 * 109.46805 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47273 * 300.00232 * 20 18 16 24 24 H 1.08997 * 109.46682 * 299.99659 * 1 2 3 25 25 H 1.08993 * 109.47000 * 59.99834 * 1 2 3 26 26 H 1.08999 * 109.46744 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47746 * 190.16524 * 3 2 1 28 28 H 1.08999 * 109.47297 * 310.17039 * 3 2 1 29 29 H 1.09001 * 109.47339 * 70.16342 * 3 2 1 30 30 H 1.07997 * 119.90227 * 359.97438 * 7 6 4 31 31 H 1.07998 * 120.04491 * 179.97438 * 10 8 7 32 32 H 1.07994 * 119.87886 * 180.02562 * 11 10 8 33 33 H 1.08996 * 110.30213 * 223.88337 * 13 12 6 34 34 H 1.08999 * 110.30250 * 101.72548 * 13 12 6 35 35 H 0.96994 * 120.00230 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 1 1.4792 -1.7223 1.2220 6 6 1.8462 0.0264 2.4186 7 6 0.7354 0.2392 3.2173 8 6 0.8382 1.0111 4.3606 9 9 -0.2475 1.2164 5.1382 10 6 2.0554 1.5735 4.7062 11 6 3.1627 1.3616 3.9095 12 6 3.0609 0.5883 2.7647 13 6 4.1093 0.2122 1.7395 14 6 3.5140 -0.9898 0.9757 15 1 3.8182 -1.9303 1.4351 16 6 3.9088 -0.9543 -0.4783 17 1 3.1530 -0.8317 -1.2402 18 6 5.2345 -1.0783 -0.8360 19 7 6.1547 -1.2280 0.0916 20 14 5.7238 -1.0335 -2.6382 21 1 5.3123 0.2645 -3.2308 22 1 7.1963 -1.1857 -2.7552 23 1 5.0520 -2.1429 -3.3613 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.0701 1.3481 -0.1814 28 1 1.5069 1.9482 -0.7853 29 1 1.8002 1.8356 0.9667 30 1 -0.2140 -0.1988 2.9469 31 1 2.1385 2.1769 5.5981 32 1 4.1119 1.8001 4.1797 33 1 5.0363 -0.0765 2.2348 34 1 4.2869 1.0437 1.0576 35 1 7.0874 -1.3148 -0.1599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259639184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:05 Heat of formation + Delta-G solvation = -19.733277 kcal Electronic energy + Delta-G solvation = -18699.609598 eV Core-core repulsion = 15804.583585 eV Total energy + Delta-G solvation = -2895.026013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.87865 -41.57204 -37.95304 -35.50062 -33.73467 -32.10156 -30.05347 -28.48792 -27.67389 -26.54897 -23.82764 -23.27092 -21.81160 -20.81840 -18.39009 -17.98023 -17.49211 -16.80100 -16.53447 -16.23352 -16.14490 -15.59972 -15.42997 -14.69204 -14.46458 -14.27971 -13.84608 -13.53949 -13.21502 -12.99959 -12.88057 -12.74155 -12.56353 -12.47712 -12.24917 -12.06426 -11.81472 -11.70776 -11.08847 -10.73097 -10.40484 -9.94040 -9.31427 -8.95519 -7.99252 -6.01349 0.20904 0.25831 1.50125 1.50714 1.57793 2.54441 2.60346 3.15681 3.30684 3.38251 3.65695 3.87952 3.99223 4.24120 4.33888 4.40499 4.49738 4.62506 4.73997 4.76314 4.84116 4.92413 4.99951 5.06013 5.10399 5.15581 5.23573 5.31604 5.38014 5.62596 5.79074 5.85296 5.98102 6.02387 6.25294 6.43545 6.62862 7.12218 7.64217 9.11287 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.007371 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.920921 B = 3797.651132 C = 4351.818334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.518 5.518 3 C 0.031 3.969 4 C 0.132 3.868 5 H 0.075 0.925 6 C -0.105 4.105 7 C -0.139 4.139 8 C 0.074 3.926 9 F -0.144 7.144 10 C -0.143 4.143 11 C -0.093 4.093 12 C -0.098 4.098 13 C -0.052 4.052 14 C 0.055 3.945 15 H 0.007 0.993 16 C -0.487 4.487 17 H 0.079 0.921 18 C 0.009 3.991 19 N -0.928 5.928 20 Si 0.946 3.054 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.276 1.276 24 H 0.025 0.975 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.017 0.983 30 H 0.139 0.861 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 5.711 5.707 12.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.240 5.240 3 C -0.117 4.117 4 C 0.023 3.977 5 H 0.093 0.907 6 C -0.107 4.107 7 C -0.158 4.158 8 C 0.055 3.945 9 F -0.123 7.123 10 C -0.161 4.161 11 C -0.111 4.111 12 C -0.099 4.099 13 C -0.090 4.090 14 C 0.036 3.964 15 H 0.025 0.975 16 C -0.526 4.526 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.569 5.569 20 Si 0.774 3.226 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.202 1.202 24 H 0.043 0.957 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.163 0.837 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.133 5.460 5.273 11.876 hybrid contribution 0.251 0.226 0.047 0.341 sum -8.882 5.686 5.320 11.812 Atomic orbital electron populations 1.22517 0.87421 1.02172 1.00754 1.62187 1.07283 1.14070 1.40428 1.22419 1.01913 0.88394 0.99005 1.21268 0.98192 0.94562 0.83674 0.90735 1.21289 0.93100 0.98948 0.97338 1.20681 0.99544 1.01181 0.94420 1.17564 0.84001 1.01479 0.91483 1.91462 1.53327 1.93764 1.73772 1.21215 0.90687 1.02162 1.02085 1.20759 0.99371 0.97817 0.93114 1.21315 0.96600 0.96228 0.95784 1.21073 0.95090 0.99022 0.93810 1.19316 0.88631 0.92792 0.95677 0.97532 1.21386 0.92085 1.46595 0.92491 0.90286 1.25675 0.97142 0.95875 1.00174 1.70084 1.00832 1.52216 1.33799 0.85794 0.76222 0.78618 0.82004 1.19815 1.22052 1.20205 0.95658 0.90645 0.91197 0.91376 0.91500 0.96430 0.84366 0.82123 0.83719 0.93624 0.91997 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.36 127.69 1.20 1.75 16 2 N -0.52 -19.17 3.39 -923.74 -3.14 -22.31 16 3 C 0.03 1.11 8.05 127.69 1.03 2.14 16 4 C 0.13 5.21 2.92 44.84 0.13 5.34 16 5 H 0.07 2.89 8.00 -2.39 -0.02 2.87 16 6 C -0.10 -3.74 3.86 -19.60 -0.08 -3.82 16 7 C -0.14 -4.31 9.02 22.34 0.20 -4.11 16 8 C 0.07 2.15 7.30 22.35 0.16 2.31 16 9 F -0.14 -4.05 17.27 44.97 0.78 -3.27 16 10 C -0.14 -3.83 10.03 22.28 0.22 -3.61 16 11 C -0.09 -2.82 10.04 22.29 0.22 -2.60 16 12 C -0.10 -3.66 5.26 -19.58 -0.10 -3.76 16 13 C -0.05 -2.34 4.79 30.52 0.15 -2.20 16 14 C 0.05 2.62 2.77 -10.62 -0.03 2.59 16 15 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 16 C -0.49 -25.26 6.69 25.60 0.17 -25.09 16 17 H 0.08 4.10 6.57 -2.91 -0.02 4.08 16 18 C 0.01 0.46 5.35 84.65 0.45 0.91 16 19 N -0.93 -52.54 12.55 21.45 0.27 -52.27 16 20 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H 0.02 0.69 6.43 -2.39 -0.02 0.67 16 25 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 26 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 27 H 0.07 2.86 4.65 -2.39 -0.01 2.85 16 28 H 0.07 2.11 8.06 -2.39 -0.02 2.10 16 29 H 0.02 0.62 6.14 -2.39 -0.01 0.60 16 30 H 0.14 3.80 7.58 -2.91 -0.02 3.78 16 31 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 32 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.05 2.22 7.98 -2.39 -0.02 2.20 16 34 H 0.06 2.90 6.00 -2.39 -0.01 2.89 16 35 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -57.01 279.65 4.76 -52.25 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.09 Total: 10.46 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 3.73 Total: -30.13 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -2.87 Total: -74.58 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -57.01 4.76 -52.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.517 kcal (2) G-P(sol) polarization free energy of solvation -57.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds