Wall clock time and date at job start Mon Mar 30 2020 07:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99961 * 2 1 4 4 C 1.46892 * 111.00120 * 123.95617 * 2 1 3 5 5 H 1.09004 * 110.26893 * 180.62992 * 4 2 1 6 6 C 1.51377 * 110.38768 * 58.49731 * 4 2 1 7 7 C 1.38458 * 130.36673 * 43.83972 * 6 4 2 8 8 C 1.38326 * 120.19703 * 180.02562 * 7 6 4 9 9 F 1.35098 * 120.06362 * 180.02562 * 8 7 6 10 10 C 1.38475 * 119.87943 * 359.97438 * 8 7 6 11 11 C 1.38062 * 119.90843 * 0.02562 * 10 8 7 12 12 C 1.38228 * 109.75772 * 223.83995 * 6 4 2 13 13 C 1.51384 * 109.75266 * 359.97438 * 12 6 4 14 14 C 1.54345 * 105.17136 * 17.19764 * 13 12 6 15 15 H 1.09007 * 110.99259 * 91.94207 * 14 13 12 16 16 C 1.50698 * 110.82185 * 215.41252 * 14 13 12 17 17 H 1.07998 * 119.99503 * 112.97340 * 16 14 13 18 18 C 1.37873 * 119.99940 * 293.24825 * 16 14 13 19 19 N 1.31511 * 119.99993 * 359.72107 * 18 16 14 20 20 Si 1.86800 * 119.99723 * 179.72683 * 18 16 14 21 21 H 1.48497 * 109.47239 * 59.99929 * 20 18 16 22 22 H 1.48500 * 109.46927 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46749 * 299.99503 * 20 18 16 24 24 H 1.09006 * 109.46998 * 302.78893 * 1 2 3 25 25 H 1.09001 * 109.47364 * 62.78670 * 1 2 3 26 26 H 1.08998 * 109.47041 * 182.79305 * 1 2 3 27 27 H 1.08993 * 109.47278 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47032 * 300.00399 * 3 2 1 29 29 H 1.09007 * 109.46938 * 60.00124 * 3 2 1 30 30 H 1.08004 * 119.90336 * 359.97438 * 7 6 4 31 31 H 1.08003 * 120.04977 * 179.97438 * 10 8 7 32 32 H 1.08000 * 119.87451 * 179.97438 * 11 10 8 33 33 H 1.08994 * 110.30681 * 258.27129 * 13 12 6 34 34 H 1.09007 * 110.29654 * 136.11635 * 13 12 6 35 35 H 0.97001 * 119.99713 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0853 -0.7489 1.1322 6 6 1.4922 -2.1929 1.0905 7 6 1.3908 -3.0735 0.0268 8 6 0.8922 -4.3485 0.2243 9 9 0.7949 -5.2057 -0.8154 10 6 0.4939 -4.7452 1.4898 11 6 0.5952 -3.8669 2.5502 12 6 1.0944 -2.5899 2.3534 13 6 1.3036 -1.4570 3.3354 14 6 1.4582 -0.1915 2.4653 15 1 0.4962 0.2983 2.3141 16 6 2.4516 0.7617 3.0780 17 1 3.3907 0.9558 2.5813 18 6 2.1639 1.3818 4.2754 19 7 1.0203 1.1455 4.8801 20 14 3.3987 2.5575 5.0385 21 1 3.6536 3.6830 4.1039 22 1 2.8546 3.0868 6.3149 23 1 4.6697 1.8368 5.3040 24 1 -0.3633 0.5566 0.8640 25 1 -0.3634 0.4700 -0.9139 26 1 -0.3633 -1.0264 0.0501 27 1 3.0850 1.3424 -0.0005 28 1 1.6459 1.8948 -0.8900 29 1 1.6459 1.8948 0.8901 30 1 1.7012 -2.7636 -0.9601 31 1 0.1038 -5.7399 1.6471 32 1 0.2840 -4.1766 3.5369 33 1 2.2072 -1.6260 3.9210 34 1 0.4388 -1.3612 3.9920 35 1 0.8178 1.5820 5.7224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259639186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:13 Heat of formation + Delta-G solvation = -17.368636 kcal Electronic energy + Delta-G solvation = -18498.644844 eV Core-core repulsion = 15603.721369 eV Total energy + Delta-G solvation = -2894.923475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.52506 -39.82342 -36.70267 -33.86964 -32.14013 -30.69618 -28.33299 -26.84706 -26.28537 -24.87302 -22.43164 -21.68504 -20.43284 -19.10949 -16.77217 -16.49488 -16.00795 -15.26684 -15.04617 -14.70500 -14.53183 -14.21318 -13.70797 -13.30145 -12.98647 -12.89149 -12.15104 -12.03088 -11.71732 -11.50884 -11.15264 -11.08922 -10.99135 -10.86306 -10.78792 -10.46546 -10.24427 -10.18002 -9.86290 -9.07502 -8.55606 -8.47316 -7.83662 -7.45486 -6.15297 -4.19177 1.63758 1.67897 3.24051 3.29765 3.31997 4.03970 4.32352 4.59417 4.73702 5.01794 5.21050 5.29619 5.45780 5.73685 5.79797 5.86582 5.99822 6.12317 6.18079 6.26167 6.36269 6.43340 6.48777 6.53194 6.62077 6.69612 6.73979 6.84827 6.93808 7.26292 7.32717 7.44510 7.53214 7.71734 7.78987 7.87823 8.25628 8.82389 9.45648 10.94155 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.007259 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.659824 B = 3856.520696 C = 4474.278389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.028 3.972 4 C 0.118 3.882 5 H 0.091 0.909 6 C -0.057 4.057 7 C -0.128 4.128 8 C 0.071 3.929 9 F -0.150 7.150 10 C -0.158 4.158 11 C -0.095 4.095 12 C -0.089 4.089 13 C -0.065 4.065 14 C 0.031 3.969 15 H 0.048 0.952 16 C -0.514 4.514 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.887 5.887 20 Si 0.890 3.110 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 -5.831 -5.946 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.120 4.120 4 C 0.011 3.989 5 H 0.109 0.891 6 C -0.058 4.058 7 C -0.147 4.147 8 C 0.052 3.948 9 F -0.129 7.129 10 C -0.177 4.177 11 C -0.113 4.113 12 C -0.090 4.090 13 C -0.103 4.103 14 C 0.012 3.988 15 H 0.066 0.934 16 C -0.552 4.552 17 H 0.076 0.924 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.718 3.282 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.902 -6.021 -6.268 8.738 hybrid contribution 0.306 0.737 1.087 1.349 sum -0.595 -5.284 -5.181 7.424 Atomic orbital electron populations 1.22377 0.88675 1.01507 1.00210 1.62289 1.07405 1.14115 1.42244 1.22296 1.00083 0.89041 1.00614 1.21602 0.99217 0.86939 0.91178 0.89112 1.20579 0.96566 0.96237 0.92390 1.20557 1.02267 0.91541 1.00355 1.17481 1.04532 0.88541 0.84214 1.91435 1.94557 1.69653 1.57237 1.20888 1.04463 1.00756 0.91594 1.20489 0.99870 0.92648 0.98337 1.21439 0.95454 0.95034 0.97057 1.21276 1.01653 0.90990 0.96389 1.19979 0.97620 0.92363 0.88848 0.93443 1.20985 1.02817 1.25353 1.06086 0.92353 1.24964 0.95223 0.96459 0.96977 1.69939 1.22259 1.43053 1.17166 0.86685 0.81584 0.81348 0.78601 1.20185 1.21311 1.20179 0.94366 0.92665 0.92129 0.92142 0.93185 0.92960 0.85207 0.85556 0.85790 0.90853 0.91194 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.94 60.06 0.54 0.90 16 2 N -0.54 -9.97 5.01 -243.32 -1.22 -11.19 16 3 C 0.03 0.50 9.00 60.07 0.54 1.04 16 4 C 0.12 2.38 2.56 -67.84 -0.17 2.20 16 5 H 0.09 1.89 7.74 -51.93 -0.40 1.49 16 6 C -0.06 -1.08 4.31 -104.21 -0.45 -1.53 16 7 C -0.13 -2.22 9.59 -39.47 -0.38 -2.60 16 8 C 0.07 1.18 7.30 -39.46 -0.29 0.89 16 9 F -0.15 -2.41 17.27 2.25 0.04 -2.38 16 10 C -0.16 -2.43 10.03 -39.56 -0.40 -2.83 16 11 C -0.10 -1.57 10.04 -39.54 -0.40 -1.97 16 12 C -0.09 -1.70 6.14 -104.19 -0.64 -2.34 16 13 C -0.07 -1.43 5.66 -26.84 -0.15 -1.58 16 14 C 0.03 0.72 1.69 -90.37 -0.15 0.57 16 15 H 0.05 1.19 5.69 -51.92 -0.30 0.90 16 16 C -0.51 -12.87 7.04 -34.44 -0.24 -13.11 16 17 H 0.06 1.45 7.61 -52.49 -0.40 1.05 16 18 C 0.07 1.72 5.36 -17.82 -0.10 1.62 16 19 N -0.89 -23.93 12.74 55.43 0.71 -23.22 16 20 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.04 0.74 6.17 -51.93 -0.32 0.42 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 1.07 6.56 -51.93 -0.34 0.73 16 27 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.06 6.72 -51.93 -0.35 0.71 16 30 H 0.13 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.13 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.07 1.68 7.89 -51.93 -0.41 1.27 16 34 H 0.07 1.62 8.08 -51.93 -0.42 1.20 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 286.90 15.07 4.32 4.32 Total: -1.00 -25.84 286.90 -8.07 -33.91 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.61 Total: 2.12 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -2.29 Total: -18.74 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: -0.51 Total: -34.41 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -25.84 -8.07 -33.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.543 kcal (2) G-P(sol) polarization free energy of solvation -25.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds