Wall clock time and date at job start Mon Mar 30 2020 07:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99961 * 2 1 4 4 C 1.46892 * 111.00120 * 123.95617 * 2 1 3 5 5 H 1.09004 * 110.26893 * 180.62992 * 4 2 1 6 6 C 1.51377 * 110.38768 * 58.49731 * 4 2 1 7 7 C 1.38458 * 130.36673 * 43.83972 * 6 4 2 8 8 C 1.38326 * 120.19703 * 180.02562 * 7 6 4 9 9 F 1.35098 * 120.06362 * 180.02562 * 8 7 6 10 10 C 1.38475 * 119.87943 * 359.97438 * 8 7 6 11 11 C 1.38062 * 119.90843 * 0.02562 * 10 8 7 12 12 C 1.38228 * 109.75772 * 223.83995 * 6 4 2 13 13 C 1.51384 * 109.75266 * 359.97438 * 12 6 4 14 14 C 1.54345 * 105.17136 * 17.19764 * 13 12 6 15 15 H 1.09007 * 110.99259 * 91.94207 * 14 13 12 16 16 C 1.50698 * 110.82185 * 215.41252 * 14 13 12 17 17 H 1.07998 * 119.99503 * 112.97340 * 16 14 13 18 18 C 1.37873 * 119.99940 * 293.24825 * 16 14 13 19 19 N 1.31511 * 119.99993 * 359.72107 * 18 16 14 20 20 Si 1.86800 * 119.99723 * 179.72683 * 18 16 14 21 21 H 1.48497 * 109.47239 * 59.99929 * 20 18 16 22 22 H 1.48500 * 109.46927 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46749 * 299.99503 * 20 18 16 24 24 H 1.09006 * 109.46998 * 302.78893 * 1 2 3 25 25 H 1.09001 * 109.47364 * 62.78670 * 1 2 3 26 26 H 1.08998 * 109.47041 * 182.79305 * 1 2 3 27 27 H 1.08993 * 109.47278 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47032 * 300.00399 * 3 2 1 29 29 H 1.09007 * 109.46938 * 60.00124 * 3 2 1 30 30 H 1.08004 * 119.90336 * 359.97438 * 7 6 4 31 31 H 1.08003 * 120.04977 * 179.97438 * 10 8 7 32 32 H 1.08000 * 119.87451 * 179.97438 * 11 10 8 33 33 H 1.08994 * 110.30681 * 258.27129 * 13 12 6 34 34 H 1.09007 * 110.29654 * 136.11635 * 13 12 6 35 35 H 0.97001 * 119.99713 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0853 -0.7489 1.1322 6 6 1.4922 -2.1929 1.0905 7 6 1.3908 -3.0735 0.0268 8 6 0.8922 -4.3485 0.2243 9 9 0.7949 -5.2057 -0.8154 10 6 0.4939 -4.7452 1.4898 11 6 0.5952 -3.8669 2.5502 12 6 1.0944 -2.5899 2.3534 13 6 1.3036 -1.4570 3.3354 14 6 1.4582 -0.1915 2.4653 15 1 0.4962 0.2983 2.3141 16 6 2.4516 0.7617 3.0780 17 1 3.3907 0.9558 2.5813 18 6 2.1639 1.3818 4.2754 19 7 1.0203 1.1455 4.8801 20 14 3.3987 2.5575 5.0385 21 1 3.6536 3.6830 4.1039 22 1 2.8546 3.0868 6.3149 23 1 4.6697 1.8368 5.3040 24 1 -0.3633 0.5566 0.8640 25 1 -0.3634 0.4700 -0.9139 26 1 -0.3633 -1.0264 0.0501 27 1 3.0850 1.3424 -0.0005 28 1 1.6459 1.8948 -0.8900 29 1 1.6459 1.8948 0.8901 30 1 1.7012 -2.7636 -0.9601 31 1 0.1038 -5.7399 1.6471 32 1 0.2840 -4.1766 3.5369 33 1 2.2072 -1.6260 3.9210 34 1 0.4388 -1.3612 3.9920 35 1 0.8178 1.5820 5.7224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259639186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:12 Heat of formation + Delta-G solvation = -30.995990 kcal Electronic energy + Delta-G solvation = -18499.235770 eV Core-core repulsion = 15603.721369 eV Total energy + Delta-G solvation = -2895.514401 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.81315 -41.33045 -38.16171 -35.57393 -33.91921 -32.08650 -29.99192 -28.31142 -27.82835 -26.66587 -23.88789 -23.27433 -21.90358 -20.68467 -18.58432 -17.94517 -17.46221 -16.75186 -16.52726 -16.25710 -16.12272 -15.68913 -15.21721 -14.81178 -14.44843 -14.39335 -13.86952 -13.62075 -13.20558 -13.00937 -12.84070 -12.70503 -12.56102 -12.52247 -12.40217 -12.10790 -11.89745 -11.81004 -11.49349 -10.96386 -10.54037 -9.81976 -9.28809 -9.04783 -8.14181 -6.22909 0.25574 0.33678 1.42161 1.43129 1.49813 2.41978 2.65868 3.12865 3.24171 3.27678 3.71004 3.92088 4.08418 4.35746 4.38282 4.43300 4.47558 4.63175 4.65352 4.79738 4.88700 4.96507 5.03985 5.06393 5.13055 5.17025 5.22023 5.28680 5.37382 5.53315 5.66564 5.81886 5.84490 6.02239 6.15419 6.25404 6.37721 6.84649 7.44075 8.94558 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.007259 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.659824 B = 3856.520696 C = 4474.278389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.533 5.533 3 C 0.032 3.968 4 C 0.126 3.874 5 H 0.080 0.920 6 C -0.066 4.066 7 C -0.128 4.128 8 C 0.075 3.925 9 F -0.144 7.144 10 C -0.144 4.144 11 C -0.090 4.090 12 C -0.110 4.110 13 C -0.054 4.054 14 C 0.031 3.969 15 H 0.020 0.980 16 C -0.519 4.519 17 H 0.056 0.944 18 C 0.020 3.980 19 N -0.917 5.917 20 Si 0.947 3.053 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.272 1.272 24 H 0.013 0.987 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.021 0.979 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -7.151 -7.167 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.255 5.255 3 C -0.116 4.116 4 C 0.018 3.982 5 H 0.098 0.902 6 C -0.067 4.067 7 C -0.147 4.147 8 C 0.056 3.944 9 F -0.123 7.123 10 C -0.163 4.163 11 C -0.108 4.108 12 C -0.110 4.110 13 C -0.092 4.092 14 C 0.011 3.989 15 H 0.038 0.962 16 C -0.557 4.557 17 H 0.074 0.926 18 C -0.180 4.180 19 N -0.556 5.556 20 Si 0.773 3.227 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.197 1.197 24 H 0.032 0.968 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.040 0.960 30 H 0.157 0.843 31 H 0.180 0.820 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.752 -7.342 -7.505 10.526 hybrid contribution 0.231 1.090 1.407 1.795 sum -0.520 -6.252 -6.098 8.749 Atomic orbital electron populations 1.22358 0.87989 1.01365 1.00432 1.62360 1.07928 1.14238 1.40960 1.22288 1.00264 0.88603 1.00487 1.21352 0.98480 0.88191 0.90204 0.90231 1.20395 0.97674 0.95706 0.92929 1.20578 1.02234 0.91747 1.00134 1.17555 1.03833 0.88183 0.84789 1.91458 1.94424 1.69319 1.57091 1.21207 1.02783 1.01855 0.90413 1.20713 0.98673 0.91444 0.99923 1.21239 0.97896 0.95689 0.96215 1.20939 0.99712 0.92244 0.96344 1.19841 0.95888 0.92360 0.90826 0.96181 1.21273 1.02984 1.25447 1.06026 0.92594 1.25645 0.96698 0.98038 0.97591 1.70059 1.23820 1.44236 1.17464 0.85781 0.79614 0.79613 0.77699 1.19624 1.21379 1.19728 0.96799 0.89955 0.92182 0.91881 0.90343 0.96006 0.84347 0.82013 0.83646 0.92787 0.93515 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 8.94 127.69 1.14 2.07 16 2 N -0.53 -19.47 5.01 -923.74 -4.63 -24.10 16 3 C 0.03 1.12 9.00 127.69 1.15 2.27 16 4 C 0.13 5.11 2.56 44.84 0.11 5.22 16 5 H 0.08 3.37 7.74 -2.39 -0.02 3.35 16 6 C -0.07 -2.46 4.31 -19.60 -0.08 -2.55 16 7 C -0.13 -4.16 9.59 22.34 0.21 -3.94 16 8 C 0.08 2.24 7.30 22.35 0.16 2.41 16 9 F -0.14 -4.12 17.27 44.97 0.78 -3.35 16 10 C -0.14 -3.89 10.03 22.28 0.22 -3.67 16 11 C -0.09 -2.75 10.04 22.29 0.22 -2.52 16 12 C -0.11 -4.16 6.14 -19.58 -0.12 -4.28 16 13 C -0.05 -2.46 5.66 30.52 0.17 -2.29 16 14 C 0.03 1.45 1.69 -10.63 -0.02 1.43 16 15 H 0.02 1.07 5.69 -2.38 -0.01 1.06 16 16 C -0.52 -26.79 7.04 25.60 0.18 -26.61 16 17 H 0.06 2.84 7.61 -2.91 -0.02 2.82 16 18 C 0.02 1.05 5.36 84.65 0.45 1.50 16 19 N -0.92 -51.19 12.74 21.45 0.27 -50.91 16 20 Si 0.95 42.06 29.54 68.60 2.03 44.08 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H 0.01 0.54 6.17 -2.38 -0.01 0.53 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 2.08 6.56 -2.39 -0.02 2.06 16 27 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.02 0.89 6.72 -2.38 -0.02 0.87 16 30 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.05 2.59 7.89 -2.39 -0.02 2.57 16 34 H 0.05 2.27 8.08 -2.38 -0.02 2.25 16 35 H 0.26 14.01 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -56.01 286.90 3.34 -52.66 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.08 Total: 12.57 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.81 Total: -30.96 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -4.36 Total: -75.01 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -56.01 3.34 -52.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.669 kcal (2) G-P(sol) polarization free energy of solvation -56.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds