Wall clock time and date at job start Mon Mar 30 2020 07:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47119 * 300.00598 * 3 2 1 6 6 H 1.48504 * 109.46879 * 60.00109 * 3 2 1 7 7 C 1.37874 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99870 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00043 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.42266 * 302.31367 * 9 7 2 11 11 C 1.54909 * 110.37389 * 64.62805 * 9 7 2 12 12 C 1.55138 * 101.64921 * 155.89817 * 11 9 7 13 13 C 1.54311 * 103.02510 * 324.34720 * 12 11 9 14 14 N 1.47450 * 107.23169 * 22.28210 * 13 12 11 15 15 C 1.46900 * 110.99686 * 123.25988 * 14 13 12 16 16 C 1.53001 * 109.47303 * 69.87530 * 15 14 13 17 17 C 1.53003 * 109.47149 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47301 * 180.02562 * 17 16 15 19 19 C 1.34512 * 125.79090 * 90.02258 * 18 17 16 20 20 C 1.41379 * 106.84332 * 180.02562 * 19 18 17 21 21 C 1.34512 * 106.84086 * 0.02562 * 20 19 18 22 22 O 1.34301 * 125.79037 * 270.02854 * 18 17 16 23 23 H 0.97000 * 119.99937 * 359.97438 * 1 2 3 24 24 H 1.08994 * 110.98885 * 37.80816 * 11 9 7 25 25 H 1.08995 * 111.01963 * 274.00571 * 11 9 7 26 26 H 1.09002 * 110.70777 * 205.96213 * 12 11 9 27 27 H 1.09008 * 110.85651 * 82.80213 * 12 11 9 28 28 H 1.08997 * 109.89110 * 262.88220 * 13 12 11 29 29 H 1.08996 * 109.89410 * 141.68996 * 13 12 11 30 30 H 1.09003 * 109.47076 * 309.87375 * 15 14 13 31 31 H 1.09004 * 109.46834 * 189.87429 * 15 14 13 32 32 H 1.08997 * 109.46744 * 59.99832 * 16 15 14 33 33 H 1.08995 * 109.47107 * 300.00004 * 16 15 14 34 34 H 1.09003 * 109.46927 * 60.00031 * 17 16 15 35 35 H 1.09005 * 109.46937 * 300.00503 * 17 16 15 36 36 H 1.08007 * 126.58064 * 359.97438 * 19 18 17 37 37 H 1.07997 * 126.58312 * 179.97438 * 20 19 18 38 38 H 1.07998 * 125.79383 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5883 -2.5557 0.8630 11 6 0.4420 -2.6548 -1.3124 12 6 0.2930 -4.1960 -1.4076 13 6 1.6341 -4.7105 -0.8437 14 7 2.1940 -3.6378 -0.0011 15 6 2.4417 -4.1169 1.3653 16 6 3.6101 -5.1047 1.3555 17 6 3.8685 -5.6032 2.7788 18 6 5.0197 -6.5756 2.7692 19 6 6.3177 -6.2596 2.9266 20 6 7.0460 -7.4689 2.8492 21 6 6.1496 -8.4515 2.6487 22 8 4.9238 -7.9047 2.6021 23 1 -0.4850 0.8401 0.0004 24 1 0.9990 -2.2630 -2.1634 25 1 -0.5321 -2.1726 -1.2305 26 1 0.1660 -4.5077 -2.4443 27 1 -0.5405 -4.5438 -0.7972 28 1 2.3187 -4.9348 -1.6617 29 1 1.4655 -5.6041 -0.2429 30 1 1.5486 -4.6143 1.7435 31 1 2.6863 -3.2712 2.0081 32 1 4.5032 -4.6072 0.9774 33 1 3.3656 -5.9503 0.7128 34 1 2.9755 -6.1005 3.1573 35 1 4.1132 -4.7572 3.4212 36 1 6.7254 -5.2715 3.0814 37 1 8.1167 -7.5820 2.9340 38 1 6.3769 -9.5021 2.5435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259641744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:27 Heat of formation + Delta-G solvation = 5.455104 kcal Electronic energy + Delta-G solvation = -17889.252731 eV Core-core repulsion = 15118.779273 eV Total energy + Delta-G solvation = -2770.473458 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.52400 -38.08781 -34.75057 -32.91525 -32.50794 -30.94208 -28.53046 -27.93800 -24.89722 -24.18614 -21.73311 -21.58986 -20.33234 -19.65836 -19.26559 -17.29984 -16.40120 -15.93467 -15.35683 -15.02686 -14.49447 -14.07206 -14.03415 -13.03824 -12.81287 -12.69058 -12.51088 -12.38239 -12.25605 -12.01739 -11.41177 -11.25381 -10.95428 -10.76882 -10.56128 -10.40327 -10.17016 -10.05311 -9.89479 -9.71653 -9.59500 -8.95185 -8.41215 -8.36604 -7.18962 -5.98195 -3.98733 1.75715 2.63567 3.02745 3.32767 3.40724 3.46224 4.44753 4.67149 4.99033 5.02733 5.04384 5.28681 5.33058 5.52201 5.61661 5.68423 5.70717 5.81857 5.84840 5.94563 6.01607 6.10626 6.16029 6.26254 6.34127 6.49762 6.56496 6.62891 6.64532 6.69345 7.06669 7.13031 7.17417 7.48093 7.57345 7.91329 8.16867 8.30219 8.57733 9.08420 9.65307 11.11260 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.004723 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.144993 B = 5927.518960 C = 6712.778376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.492 4.492 8 H 0.064 0.936 9 C 0.208 3.792 10 H 0.013 0.987 11 C -0.103 4.103 12 C -0.151 4.151 13 C 0.045 3.955 14 N -0.526 5.526 15 C 0.060 3.940 16 C -0.109 4.109 17 C -0.042 4.042 18 C 0.004 3.996 19 C -0.218 4.218 20 C -0.212 4.212 21 C -0.054 4.054 22 O -0.178 6.178 23 H 0.259 0.741 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 -13.512 4.431 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.102 3.898 10 H 0.031 0.969 11 C -0.142 4.142 12 C -0.190 4.190 13 C -0.083 4.083 14 N -0.251 5.251 15 C -0.069 4.069 16 C -0.147 4.147 17 C -0.080 4.080 18 C -0.046 4.046 19 C -0.237 4.237 20 C -0.231 4.231 21 C -0.122 4.122 22 O -0.074 6.074 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.894 -13.371 4.191 16.083 hybrid contribution -0.053 0.601 0.330 0.687 sum 7.841 -12.770 4.520 15.653 Atomic orbital electron populations 1.69974 1.05890 1.26380 1.51394 1.24957 0.94863 0.99078 0.95496 0.86488 0.80192 0.83621 0.77398 1.19704 1.21159 1.21221 1.21108 0.93492 0.89236 1.49271 0.91808 1.20135 0.88545 0.87866 0.93204 0.96915 1.22617 1.01196 0.90598 0.99830 1.22883 0.96824 0.99778 0.99507 1.22730 0.94827 0.93678 0.97062 1.63594 1.46812 1.06267 1.08393 1.22092 0.95233 0.97248 0.92343 1.21616 1.00266 0.98948 0.93838 1.20227 0.93460 0.94612 0.99682 1.22648 0.97113 0.81355 1.03498 1.21614 0.92616 0.99803 1.09665 1.21817 1.00581 0.92720 1.08029 1.23947 0.81465 0.99349 1.07412 1.84020 1.31915 1.20978 1.70497 0.93172 0.92521 0.90990 0.92714 0.93008 0.92170 0.94493 0.96096 0.90558 0.90809 0.92235 0.90352 0.88623 0.83476 0.83731 0.78452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 12.27 55.43 0.68 -24.97 16 2 C 0.06 1.58 5.34 -17.82 -0.10 1.48 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.49 -13.59 8.82 -34.44 -0.30 -13.90 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.21 5.24 2.28 -67.34 -0.15 5.09 16 10 H 0.01 0.36 7.81 -51.93 -0.41 -0.05 16 11 C -0.10 -2.45 5.86 -24.59 -0.14 -2.60 16 12 C -0.15 -2.93 6.94 -24.91 -0.17 -3.10 16 13 C 0.05 0.86 6.21 -2.84 -0.02 0.84 16 14 N -0.53 -11.35 4.80 -224.75 -1.08 -12.43 16 15 C 0.06 1.10 4.54 -3.82 -0.02 1.08 16 16 C -0.11 -1.66 5.23 -26.73 -0.14 -1.80 16 17 C -0.04 -0.54 5.75 -27.88 -0.16 -0.70 16 18 C 0.00 0.05 6.57 -35.63 -0.23 -0.18 16 19 C -0.22 -2.75 10.81 -39.70 -0.43 -3.18 16 20 C -0.21 -2.37 10.91 -39.70 -0.43 -2.80 16 21 C -0.05 -0.58 12.09 29.42 0.36 -0.23 16 22 O -0.18 -2.39 10.65 5.71 0.06 -2.33 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 25 H 0.07 1.82 7.57 -51.93 -0.39 1.43 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.63 6.91 -51.93 -0.36 0.28 16 30 H 0.02 0.38 7.96 -51.93 -0.41 -0.04 16 31 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.92 7.14 -51.93 -0.37 0.55 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.20 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -29.73 312.59 -8.72 -38.45 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.13 Total: 0.14 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -1.95 Total: -19.99 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.40 Total: -37.40 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: 0.06 Total: -2.33 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.73 -8.72 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.908 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds