Wall clock time and date at job start Mon Mar 30 2020 07:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47119 * 300.00598 * 3 2 1 6 6 H 1.48504 * 109.46879 * 60.00109 * 3 2 1 7 7 C 1.37874 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99870 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00043 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.42266 * 302.31367 * 9 7 2 11 11 C 1.54909 * 110.37389 * 64.62805 * 9 7 2 12 12 C 1.55138 * 101.64921 * 155.89817 * 11 9 7 13 13 C 1.54311 * 103.02510 * 324.34720 * 12 11 9 14 14 N 1.47450 * 107.23169 * 22.28210 * 13 12 11 15 15 C 1.46900 * 110.99686 * 123.25988 * 14 13 12 16 16 C 1.53001 * 109.47303 * 69.87530 * 15 14 13 17 17 C 1.53003 * 109.47149 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47301 * 180.02562 * 17 16 15 19 19 C 1.34512 * 125.79090 * 90.02258 * 18 17 16 20 20 C 1.41379 * 106.84332 * 180.02562 * 19 18 17 21 21 C 1.34512 * 106.84086 * 0.02562 * 20 19 18 22 22 O 1.34301 * 125.79037 * 270.02854 * 18 17 16 23 23 H 0.97000 * 119.99937 * 359.97438 * 1 2 3 24 24 H 1.08994 * 110.98885 * 37.80816 * 11 9 7 25 25 H 1.08995 * 111.01963 * 274.00571 * 11 9 7 26 26 H 1.09002 * 110.70777 * 205.96213 * 12 11 9 27 27 H 1.09008 * 110.85651 * 82.80213 * 12 11 9 28 28 H 1.08997 * 109.89110 * 262.88220 * 13 12 11 29 29 H 1.08996 * 109.89410 * 141.68996 * 13 12 11 30 30 H 1.09003 * 109.47076 * 309.87375 * 15 14 13 31 31 H 1.09004 * 109.46834 * 189.87429 * 15 14 13 32 32 H 1.08997 * 109.46744 * 59.99832 * 16 15 14 33 33 H 1.08995 * 109.47107 * 300.00004 * 16 15 14 34 34 H 1.09003 * 109.46927 * 60.00031 * 17 16 15 35 35 H 1.09005 * 109.46937 * 300.00503 * 17 16 15 36 36 H 1.08007 * 126.58064 * 359.97438 * 19 18 17 37 37 H 1.07997 * 126.58312 * 179.97438 * 20 19 18 38 38 H 1.07998 * 125.79383 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5883 -2.5557 0.8630 11 6 0.4420 -2.6548 -1.3124 12 6 0.2930 -4.1960 -1.4076 13 6 1.6341 -4.7105 -0.8437 14 7 2.1940 -3.6378 -0.0011 15 6 2.4417 -4.1169 1.3653 16 6 3.6101 -5.1047 1.3555 17 6 3.8685 -5.6032 2.7788 18 6 5.0197 -6.5756 2.7692 19 6 6.3177 -6.2596 2.9266 20 6 7.0460 -7.4689 2.8492 21 6 6.1496 -8.4515 2.6487 22 8 4.9238 -7.9047 2.6021 23 1 -0.4850 0.8401 0.0004 24 1 0.9990 -2.2630 -2.1634 25 1 -0.5321 -2.1726 -1.2305 26 1 0.1660 -4.5077 -2.4443 27 1 -0.5405 -4.5438 -0.7972 28 1 2.3187 -4.9348 -1.6617 29 1 1.4655 -5.6041 -0.2429 30 1 1.5486 -4.6143 1.7435 31 1 2.6863 -3.2712 2.0081 32 1 4.5032 -4.6072 0.9774 33 1 3.3656 -5.9503 0.7128 34 1 2.9755 -6.1005 3.1573 35 1 4.1132 -4.7572 3.4212 36 1 6.7254 -5.2715 3.0814 37 1 8.1167 -7.5820 2.9340 38 1 6.3769 -9.5021 2.5435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259641744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:27 Heat of formation + Delta-G solvation = -11.714267 kcal Electronic energy + Delta-G solvation = -17889.997251 eV Core-core repulsion = 15118.779273 eV Total energy + Delta-G solvation = -2771.217978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.42768 -39.77311 -36.05420 -34.58434 -33.79997 -32.32846 -30.22838 -29.34536 -26.47844 -25.85232 -22.98230 -22.61866 -21.64951 -21.14078 -20.87664 -18.45791 -18.19276 -16.98603 -16.87823 -16.56447 -16.14185 -15.58131 -15.27179 -14.54869 -14.25593 -13.79071 -13.76534 -13.69061 -13.63153 -13.40598 -13.04335 -12.82385 -12.75475 -12.42805 -12.19990 -12.07837 -11.79757 -11.63204 -11.50092 -11.34849 -10.95293 -10.80478 -10.48375 -9.31644 -8.92057 -8.10070 -6.18406 0.85195 1.41724 1.43690 1.56072 1.74951 2.16533 2.44594 3.19406 3.39622 3.79469 4.01909 4.06689 4.18480 4.19548 4.25535 4.32685 4.45059 4.51529 4.60137 4.71929 4.79763 4.87140 4.88934 4.98223 5.00112 5.05352 5.17241 5.23268 5.27991 5.36194 5.40978 5.55738 5.65368 5.67099 5.78400 6.23000 6.27015 6.56288 6.64725 6.93859 7.49780 8.98071 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.004723 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.144993 B = 5927.518960 C = 6712.778376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.510 4.510 8 H 0.052 0.948 9 C 0.209 3.791 10 H -0.020 1.020 11 C -0.101 4.101 12 C -0.140 4.140 13 C 0.046 3.954 14 N -0.541 5.541 15 C 0.061 3.939 16 C -0.092 4.092 17 C -0.035 4.035 18 C -0.020 4.020 19 C -0.227 4.227 20 C -0.227 4.227 21 C -0.049 4.049 22 O -0.195 6.195 23 H 0.260 0.740 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.153 0.847 37 H 0.168 0.832 38 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.038 -14.972 4.408 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.102 3.898 10 H -0.002 1.002 11 C -0.140 4.140 12 C -0.178 4.178 13 C -0.082 4.082 14 N -0.265 5.265 15 C -0.067 4.067 16 C -0.130 4.130 17 C -0.072 4.072 18 C -0.070 4.070 19 C -0.246 4.246 20 C -0.246 4.246 21 C -0.115 4.115 22 O -0.092 6.092 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.171 0.829 37 H 0.185 0.815 38 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 9.104 -14.847 4.170 17.908 hybrid contribution -0.388 1.000 0.356 1.130 sum 8.716 -13.847 4.526 16.976 Atomic orbital electron populations 1.70086 1.07142 1.27198 1.51978 1.25701 0.95671 1.02272 0.95095 0.85505 0.78992 0.79573 0.77554 1.19337 1.20661 1.20589 1.21355 0.93110 0.90907 1.49459 0.92961 1.19934 0.88640 0.88689 0.92518 1.00194 1.22417 0.99273 0.93950 0.98401 1.22819 0.97462 0.95995 1.01508 1.22806 0.94622 0.93524 0.97259 1.63506 1.45941 1.06615 1.10447 1.22106 0.96738 0.97332 0.90545 1.21408 0.98113 0.97799 0.95635 1.20102 0.94050 0.95028 0.98038 1.22645 0.97339 0.81673 1.05355 1.21912 0.92821 1.00824 1.09061 1.22169 1.01923 0.92167 1.08295 1.24777 0.80387 1.00988 1.05390 1.84008 1.33340 1.20965 1.70853 0.93061 0.94098 0.93417 0.90018 0.92188 0.91051 0.92236 0.95541 0.92400 0.91953 0.92004 0.89553 0.87918 0.82946 0.81488 0.74675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.99 12.27 21.45 0.26 -53.73 16 2 C 0.01 0.62 5.34 84.65 0.45 1.07 16 3 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.51 -28.84 8.82 25.60 0.23 -28.61 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.21 10.78 2.28 44.64 0.10 10.88 16 10 H -0.02 -1.12 7.81 -2.39 -0.02 -1.14 16 11 C -0.10 -4.88 5.86 31.98 0.19 -4.69 16 12 C -0.14 -5.20 6.94 31.77 0.22 -4.98 16 13 C 0.05 1.65 6.21 86.64 0.54 2.19 16 14 N -0.54 -23.31 4.80 -864.97 -4.15 -27.45 16 15 C 0.06 2.26 4.54 86.30 0.39 2.65 16 16 C -0.09 -2.72 5.23 30.60 0.16 -2.56 16 17 C -0.03 -0.85 5.75 29.85 0.17 -0.68 16 18 C -0.02 -0.52 6.57 24.83 0.16 -0.36 16 19 C -0.23 -5.44 10.81 22.19 0.24 -5.20 16 20 C -0.23 -4.54 10.91 22.19 0.24 -4.30 16 21 C -0.05 -0.92 12.09 66.97 0.81 -0.11 16 22 O -0.19 -4.88 10.65 -2.47 -0.03 -4.90 16 23 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.04 2.04 8.05 -2.39 -0.02 2.03 16 25 H 0.05 2.48 7.57 -2.39 -0.02 2.46 16 26 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 29 H 0.06 1.89 6.91 -2.39 -0.02 1.87 16 30 H 0.03 0.94 7.96 -2.39 -0.02 0.92 16 31 H 0.06 2.31 8.07 -2.38 -0.02 2.29 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 1.80 7.14 -2.39 -0.02 1.79 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.24 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -64.66 312.59 3.03 -61.63 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.01 Total: 12.65 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 3.90 Total: -34.69 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -3.88 Total: -81.18 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.03 Total: -4.90 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -64.66 3.03 -61.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.916 kcal (2) G-P(sol) polarization free energy of solvation -64.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds