Wall clock time and date at job start Mon Mar 30 2020 07:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 120.00316 * 2 1 4 4 H 1.48497 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47127 * 300.00349 * 3 2 1 6 6 H 1.48503 * 109.46625 * 59.99779 * 3 2 1 7 7 C 1.37875 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99951 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.72651 * 56.90542 * 9 7 2 11 11 C 1.54930 * 110.66611 * 293.80393 * 9 7 2 12 12 C 1.54597 * 102.92265 * 204.14789 * 11 9 7 13 13 C 1.53992 * 105.13730 * 21.96260 * 12 11 9 14 14 N 1.47906 * 107.05958 * 1.22439 * 13 12 11 15 15 C 1.46894 * 110.99831 * 214.15632 * 14 13 12 16 16 C 1.52998 * 109.47068 * 176.10423 * 15 14 13 17 17 C 1.53006 * 109.47068 * 174.42449 * 16 15 14 18 18 C 1.50695 * 109.46921 * 179.97438 * 17 16 15 19 19 C 1.34520 * 125.79119 * 90.00277 * 18 17 16 20 20 C 1.41380 * 106.84377 * 179.74855 * 19 18 17 21 21 C 1.34512 * 106.83766 * 0.37561 * 20 19 18 22 22 O 1.34296 * 108.42614 * 359.62100 * 21 20 19 23 23 H 0.96997 * 119.99815 * 0.02562 * 1 2 3 24 24 H 1.09008 * 110.72135 * 85.79598 * 11 9 7 25 25 H 1.08994 * 110.88372 * 322.58064 * 11 9 7 26 26 H 1.08992 * 110.31555 * 263.04403 * 12 11 9 27 27 H 1.08999 * 110.39011 * 140.91799 * 12 11 9 28 28 H 1.08997 * 109.91840 * 241.86448 * 13 12 11 29 29 H 1.09009 * 110.08328 * 120.66830 * 13 12 11 30 30 H 1.08999 * 109.47558 * 56.10562 * 15 14 13 31 31 H 1.09004 * 109.47475 * 296.10899 * 15 14 13 32 32 H 1.09003 * 109.46752 * 54.43298 * 16 15 14 33 33 H 1.08994 * 109.47425 * 294.42602 * 16 15 14 34 34 H 1.09003 * 109.46641 * 60.00781 * 17 16 15 35 35 H 1.08994 * 109.47122 * 300.00338 * 17 16 15 36 36 H 1.08007 * 126.57541 * 359.96164 * 19 18 17 37 37 H 1.07995 * 126.58096 * 180.23965 * 20 19 18 38 38 H 1.08007 * 125.78808 * 179.88920 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5757 -2.5547 -0.8543 11 6 0.4714 -2.6804 1.3260 12 6 0.3122 -4.2149 1.4265 13 6 1.4303 -4.7941 0.5402 14 7 2.1925 -3.6480 -0.0012 15 6 2.6761 -3.9316 -1.3589 16 6 3.3740 -2.6915 -1.9211 17 6 3.9983 -3.0283 -3.2768 18 6 4.6851 -1.8067 -3.8308 19 6 5.9686 -1.4627 -3.6212 20 6 6.1905 -0.2582 -4.3274 21 6 5.0271 0.0663 -4.9196 22 8 4.1198 -0.8768 -4.6181 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5027 -2.1944 1.2704 25 1 1.0450 -2.2961 2.1694 26 1 -0.6645 -4.5194 1.0507 27 1 0.4390 -4.5431 2.4582 28 1 0.9957 -5.3702 -0.2767 29 1 2.0873 -5.4298 1.1340 30 1 1.8328 -4.1947 -1.9975 31 1 3.3811 -4.7624 -1.3275 32 1 4.1545 -2.3699 -1.2315 33 1 2.6460 -1.8899 -2.0454 34 1 3.2178 -3.3498 -3.9664 35 1 4.7263 -3.8299 -3.1525 36 1 6.6918 -2.0047 -3.0298 37 1 7.1158 0.2962 -4.3795 38 1 4.8534 0.9354 -5.5369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259641748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:31 Heat of formation + Delta-G solvation = 8.696674 kcal Electronic energy + Delta-G solvation = -18521.123250 eV Core-core repulsion = 15750.790357 eV Total energy + Delta-G solvation = -2770.332893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.22931 -38.08364 -34.44308 -32.62844 -32.57510 -30.91599 -28.31332 -27.95954 -24.73622 -24.21734 -21.45595 -21.23768 -20.13779 -19.65599 -19.22964 -17.05351 -16.41900 -15.63225 -15.01868 -14.76135 -14.47101 -14.03147 -13.94938 -13.14851 -12.56216 -12.52846 -12.48363 -12.25222 -12.07322 -11.75348 -11.20244 -11.13179 -10.93061 -10.59708 -10.51132 -10.36167 -10.13258 -9.98995 -9.62750 -9.52807 -9.48669 -8.86500 -8.37790 -8.10314 -7.29730 -5.99117 -3.96925 2.05698 2.90496 3.32633 3.33231 3.41124 3.47027 4.45541 4.92221 5.11605 5.27503 5.29132 5.33469 5.56469 5.63093 5.70708 5.83700 5.92217 5.94783 6.06092 6.12292 6.17260 6.21432 6.33186 6.36588 6.47396 6.55940 6.65687 6.77885 6.89111 7.09300 7.16270 7.29855 7.45372 7.47597 7.59031 7.87882 8.11633 8.26475 8.54956 9.07137 9.64747 11.11025 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.008312 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.073879 B = 3367.860187 C = 4654.145409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.490 4.490 8 H 0.068 0.932 9 C 0.204 3.796 10 H 0.012 0.988 11 C -0.102 4.102 12 C -0.137 4.137 13 C 0.039 3.961 14 N -0.518 5.518 15 C 0.063 3.937 16 C -0.112 4.112 17 C -0.044 4.044 18 C 0.013 3.987 19 C -0.223 4.223 20 C -0.214 4.214 21 C -0.053 4.053 22 O -0.173 6.173 23 H 0.258 0.742 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -4.957 -6.253 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.528 4.528 8 H 0.086 0.914 9 C 0.098 3.902 10 H 0.029 0.971 11 C -0.141 4.141 12 C -0.175 4.175 13 C -0.090 4.090 14 N -0.243 5.243 15 C -0.066 4.066 16 C -0.150 4.150 17 C -0.082 4.082 18 C -0.038 4.038 19 C -0.242 4.242 20 C -0.233 4.233 21 C -0.121 4.121 22 O -0.069 6.069 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.005 -4.740 -6.033 10.389 hybrid contribution -0.050 0.908 -0.464 1.021 sum 6.954 -3.832 -6.497 10.260 Atomic orbital electron populations 1.69966 1.05856 1.26350 1.51188 1.24919 0.94791 0.98942 0.95529 0.86579 0.80400 0.83997 0.77401 1.19593 1.21212 1.21156 1.21104 0.93521 0.89047 1.49156 0.91432 1.20334 0.88836 0.88140 0.92918 0.97052 1.22424 1.01061 0.90656 0.99951 1.22481 0.97027 0.99471 0.98531 1.22723 0.94791 0.94188 0.97266 1.64847 1.36154 1.04291 1.19029 1.22000 0.97529 0.96843 0.90206 1.21861 1.01314 0.99399 0.92377 1.20295 0.99495 0.90333 0.98036 1.22594 0.92621 0.93054 0.95499 1.21515 0.96739 0.99466 1.06499 1.21754 0.99367 0.99131 1.03091 1.23915 0.88021 0.95166 1.04991 1.84040 1.39619 1.29525 1.53743 0.93181 0.91312 0.92602 0.93115 0.92814 0.95543 0.92170 0.96215 0.92808 0.90881 0.88300 0.90742 0.89636 0.83781 0.83937 0.78614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 12.40 55.43 0.69 -24.86 16 2 C 0.06 1.64 5.36 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.49 -13.15 6.23 -34.44 -0.21 -13.36 16 8 H 0.07 1.84 6.30 -52.48 -0.33 1.51 16 9 C 0.20 5.06 1.85 -66.94 -0.12 4.94 16 10 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 11 C -0.10 -2.40 5.94 -24.87 -0.15 -2.55 16 12 C -0.14 -2.63 6.93 -25.37 -0.18 -2.81 16 13 C 0.04 0.73 6.70 -2.75 -0.02 0.71 16 14 N -0.52 -11.15 5.10 -223.99 -1.14 -12.29 16 15 C 0.06 1.18 4.83 -3.83 -0.02 1.16 16 16 C -0.11 -2.13 3.84 -26.73 -0.10 -2.23 16 17 C -0.04 -0.67 5.75 -27.88 -0.16 -0.83 16 18 C 0.01 0.21 6.58 -35.63 -0.23 -0.02 16 19 C -0.22 -3.47 10.81 -39.70 -0.43 -3.89 16 20 C -0.21 -3.07 10.91 -39.70 -0.43 -3.51 16 21 C -0.05 -0.78 12.09 29.42 0.36 -0.42 16 22 O -0.17 -3.03 10.65 5.71 0.06 -2.97 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.07 1.73 7.65 -51.92 -0.40 1.33 16 25 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.46 7.67 -51.93 -0.40 0.07 16 29 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.02 0.37 7.98 -51.93 -0.41 -0.05 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.48 7.29 -51.93 -0.38 1.10 16 33 H 0.10 2.26 6.04 -51.93 -0.31 1.95 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 37 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.20 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -29.54 307.15 -8.59 -38.13 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.01 Total: 1.97 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -1.80 Total: -21.28 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.46 Total: -37.15 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: 0.06 Total: -2.97 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.54 -8.59 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.825 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds