Wall clock time and date at job start Mon Mar 30 2020 07:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 120.00316 * 2 1 4 4 H 1.48497 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47127 * 300.00349 * 3 2 1 6 6 H 1.48503 * 109.46625 * 59.99779 * 3 2 1 7 7 C 1.37875 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99951 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.72651 * 56.90542 * 9 7 2 11 11 C 1.54930 * 110.66611 * 293.80393 * 9 7 2 12 12 C 1.54597 * 102.92265 * 204.14789 * 11 9 7 13 13 C 1.53992 * 105.13730 * 21.96260 * 12 11 9 14 14 N 1.47906 * 107.05958 * 1.22439 * 13 12 11 15 15 C 1.46894 * 110.99831 * 214.15632 * 14 13 12 16 16 C 1.52998 * 109.47068 * 176.10423 * 15 14 13 17 17 C 1.53006 * 109.47068 * 174.42449 * 16 15 14 18 18 C 1.50695 * 109.46921 * 179.97438 * 17 16 15 19 19 C 1.34520 * 125.79119 * 90.00277 * 18 17 16 20 20 C 1.41380 * 106.84377 * 179.74855 * 19 18 17 21 21 C 1.34512 * 106.83766 * 0.37561 * 20 19 18 22 22 O 1.34296 * 108.42614 * 359.62100 * 21 20 19 23 23 H 0.96997 * 119.99815 * 0.02562 * 1 2 3 24 24 H 1.09008 * 110.72135 * 85.79598 * 11 9 7 25 25 H 1.08994 * 110.88372 * 322.58064 * 11 9 7 26 26 H 1.08992 * 110.31555 * 263.04403 * 12 11 9 27 27 H 1.08999 * 110.39011 * 140.91799 * 12 11 9 28 28 H 1.08997 * 109.91840 * 241.86448 * 13 12 11 29 29 H 1.09009 * 110.08328 * 120.66830 * 13 12 11 30 30 H 1.08999 * 109.47558 * 56.10562 * 15 14 13 31 31 H 1.09004 * 109.47475 * 296.10899 * 15 14 13 32 32 H 1.09003 * 109.46752 * 54.43298 * 16 15 14 33 33 H 1.08994 * 109.47425 * 294.42602 * 16 15 14 34 34 H 1.09003 * 109.46641 * 60.00781 * 17 16 15 35 35 H 1.08994 * 109.47122 * 300.00338 * 17 16 15 36 36 H 1.08007 * 126.57541 * 359.96164 * 19 18 17 37 37 H 1.07995 * 126.58096 * 180.23965 * 20 19 18 38 38 H 1.08007 * 125.78808 * 179.88920 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5757 -2.5547 -0.8543 11 6 0.4714 -2.6804 1.3260 12 6 0.3122 -4.2149 1.4265 13 6 1.4303 -4.7941 0.5402 14 7 2.1925 -3.6480 -0.0012 15 6 2.6761 -3.9316 -1.3589 16 6 3.3740 -2.6915 -1.9211 17 6 3.9983 -3.0283 -3.2768 18 6 4.6851 -1.8067 -3.8308 19 6 5.9686 -1.4627 -3.6212 20 6 6.1905 -0.2582 -4.3274 21 6 5.0271 0.0663 -4.9196 22 8 4.1198 -0.8768 -4.6181 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5027 -2.1944 1.2704 25 1 1.0450 -2.2961 2.1694 26 1 -0.6645 -4.5194 1.0507 27 1 0.4390 -4.5431 2.4582 28 1 0.9957 -5.3702 -0.2767 29 1 2.0873 -5.4298 1.1340 30 1 1.8328 -4.1947 -1.9975 31 1 3.3811 -4.7624 -1.3275 32 1 4.1545 -2.3699 -1.2315 33 1 2.6460 -1.8899 -2.0454 34 1 3.2178 -3.3498 -3.9664 35 1 4.7263 -3.8299 -3.1525 36 1 6.6918 -2.0047 -3.0298 37 1 7.1158 0.2962 -4.3795 38 1 4.8534 0.9354 -5.5369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259641748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:31 Heat of formation + Delta-G solvation = -9.008398 kcal Electronic energy + Delta-G solvation = -18521.891000 eV Core-core repulsion = 15750.790357 eV Total energy + Delta-G solvation = -2771.100643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.41445 -39.77882 -35.87154 -34.66060 -33.81452 -32.36754 -30.16708 -29.38373 -26.42287 -25.86619 -22.85425 -22.61583 -21.54719 -21.12415 -20.96081 -18.53464 -18.12238 -16.90264 -16.69906 -16.54146 -16.03695 -15.70942 -15.29454 -14.78752 -14.18233 -13.85565 -13.73275 -13.67858 -13.48172 -13.34933 -13.00283 -12.84424 -12.68301 -12.38036 -12.21528 -11.98772 -11.81562 -11.65718 -11.29909 -11.23246 -10.85019 -10.79083 -10.47014 -9.29052 -9.01414 -8.11215 -6.13098 0.86916 1.35778 1.38516 1.49537 1.75830 2.21891 2.41859 3.20108 3.45448 3.83776 4.07550 4.14749 4.18859 4.20690 4.31689 4.37913 4.44412 4.61763 4.68433 4.74881 4.82128 4.85591 4.94143 4.99269 5.02399 5.06915 5.19021 5.31439 5.35628 5.43102 5.55082 5.66722 5.70161 5.71483 5.78412 6.20084 6.29164 6.49264 6.63752 6.95849 7.50784 8.98717 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.008312 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.073879 B = 3367.860187 C = 4654.145409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.488 4.488 8 H 0.059 0.941 9 C 0.207 3.793 10 H -0.025 1.025 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.037 3.963 14 N -0.531 5.531 15 C 0.062 3.938 16 C -0.099 4.099 17 C -0.034 4.034 18 C -0.020 4.020 19 C -0.227 4.227 20 C -0.223 4.223 21 C -0.061 4.061 22 O -0.202 6.202 23 H 0.258 0.742 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.610 -6.038 -6.430 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.526 4.526 8 H 0.077 0.923 9 C 0.100 3.900 10 H -0.008 1.008 11 C -0.140 4.140 12 C -0.166 4.166 13 C -0.090 4.090 14 N -0.256 5.256 15 C -0.066 4.066 16 C -0.137 4.137 17 C -0.071 4.071 18 C -0.070 4.070 19 C -0.246 4.246 20 C -0.242 4.242 21 C -0.128 4.128 22 O -0.099 6.099 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.136 0.864 36 H 0.179 0.821 37 H 0.188 0.812 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.635 -5.837 -6.208 12.132 hybrid contribution -0.508 1.239 -0.442 1.410 sum 8.127 -4.598 -6.650 11.464 Atomic orbital electron populations 1.70073 1.06966 1.26838 1.52621 1.25575 0.95496 1.01787 0.95779 0.85729 0.79241 0.80747 0.77380 1.19450 1.21147 1.20584 1.21289 0.93137 0.90320 1.47895 0.92333 1.20084 0.88847 0.89047 0.92038 1.00757 1.22239 0.99074 0.94114 0.98565 1.22436 0.98083 0.95650 1.00433 1.22846 0.94901 0.93458 0.97844 1.64797 1.35508 1.04398 1.20871 1.22105 0.98090 0.97612 0.88797 1.21585 0.99600 0.98205 0.94305 1.20227 1.00261 0.90945 0.95673 1.22903 0.93448 0.93858 0.96793 1.21901 0.96618 0.99929 1.06141 1.22169 1.00466 0.98958 1.02602 1.24735 0.87764 0.95344 1.04924 1.84021 1.41014 1.30438 1.54399 0.93299 0.93920 0.94195 0.91985 0.90346 0.94028 0.89552 0.96287 0.89248 0.92617 0.93087 0.90208 0.86427 0.82093 0.81198 0.75299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 12.40 21.45 0.27 -54.32 16 2 C 0.01 0.66 5.36 84.65 0.45 1.11 16 3 Si 0.94 45.48 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.49 -26.96 6.23 25.60 0.16 -26.80 16 8 H 0.06 3.28 6.30 -2.91 -0.02 3.26 16 9 C 0.21 10.51 1.85 44.51 0.08 10.60 16 10 H -0.03 -1.44 8.01 -2.39 -0.02 -1.46 16 11 C -0.10 -4.82 5.94 31.80 0.19 -4.64 16 12 C -0.13 -4.69 6.93 31.47 0.22 -4.47 16 13 C 0.04 1.31 6.70 86.44 0.58 1.89 16 14 N -0.53 -22.35 5.10 -862.57 -4.40 -26.75 16 15 C 0.06 2.25 4.83 86.30 0.42 2.66 16 16 C -0.10 -3.78 3.84 30.60 0.12 -3.66 16 17 C -0.03 -1.00 5.75 29.85 0.17 -0.83 16 18 C -0.02 -0.67 6.58 24.83 0.16 -0.50 16 19 C -0.23 -6.71 10.81 22.19 0.24 -6.47 16 20 C -0.22 -5.98 10.91 22.19 0.24 -5.73 16 21 C -0.06 -1.69 12.09 66.97 0.81 -0.88 16 22 O -0.20 -7.04 10.65 -2.49 -0.03 -7.07 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.04 2.22 7.65 -2.38 -0.02 2.20 16 25 H 0.04 1.98 8.05 -2.39 -0.02 1.96 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.04 1.33 7.67 -2.39 -0.02 1.32 16 29 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.02 0.69 7.98 -2.39 -0.02 0.67 16 31 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.06 2.27 7.29 -2.39 -0.02 2.26 16 33 H 0.05 2.43 6.04 -2.39 -0.01 2.41 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 37 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.23 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -65.81 307.15 2.73 -63.09 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.02 Total: 15.29 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.84 Total: -37.74 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -4.13 Total: -81.07 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.03 Total: -7.07 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -65.81 2.73 -63.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.078 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds