Wall clock time and date at job start Mon Mar 30 2020 07:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48537 * 110.99943 * 2 1 4 4 C 1.54936 * 103.37541 * 200.36403 * 3 2 1 5 5 C 1.54593 * 102.92368 * 37.33107 * 4 3 2 6 6 H 1.08999 * 110.30665 * 219.02471 * 5 4 3 7 7 C 1.50702 * 110.30616 * 96.95844 * 5 4 3 8 8 H 1.07998 * 119.99814 * 241.45142 * 7 5 4 9 9 C 1.37875 * 120.00316 * 61.45845 * 7 5 4 10 10 N 1.31512 * 119.99870 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00278 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47412 * 59.99429 * 11 9 7 13 13 H 1.48499 * 109.47226 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46738 * 299.99226 * 11 9 7 15 15 C 1.48064 * 111.16437 * 242.60683 * 2 1 3 16 16 H 1.09000 * 109.92284 * 26.22640 * 15 2 1 17 17 C 1.50699 * 109.99610 * 265.08152 * 15 2 1 18 18 C 1.38222 * 120.00958 * 341.98270 * 17 15 2 19 19 C 1.38228 * 120.02756 * 179.72802 * 18 17 15 20 20 C 1.38271 * 120.04546 * 0.54902 * 19 18 17 21 21 C 1.38171 * 120.02738 * 359.73076 * 20 19 18 22 22 C 1.38434 * 120.01851 * 162.26387 * 17 15 2 23 23 F 1.35101 * 120.02416 * 0.02562 * 22 17 15 24 24 H 1.08995 * 109.46825 * 59.87448 * 1 2 3 25 25 H 1.08996 * 109.46826 * 179.87305 * 1 2 3 26 26 H 1.08994 * 109.46848 * 299.86969 * 1 2 3 27 27 H 1.09002 * 110.66696 * 81.84409 * 3 2 1 28 28 H 1.09001 * 110.66368 * 318.88248 * 3 2 1 29 29 H 1.09001 * 110.72276 * 155.69044 * 4 3 2 30 30 H 1.09000 * 110.72379 * 278.79256 * 4 3 2 31 31 H 0.97007 * 120.00223 * 180.02562 * 10 9 7 32 32 H 1.08007 * 119.98586 * 359.97438 * 18 17 15 33 33 H 1.07995 * 119.97271 * 180.27403 * 19 18 17 34 34 H 1.08003 * 119.98568 * 179.74644 * 20 19 18 35 35 H 1.07997 * 120.01031 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4490 1.2149 -0.5245 5 6 3.3001 0.1092 -1.5947 6 1 4.1518 -0.5700 -1.5578 7 6 3.1796 0.7217 -2.9663 8 1 2.2870 0.5614 -3.5527 9 6 4.2089 1.4867 -3.4726 10 7 5.2957 1.6822 -2.7583 11 14 4.0593 2.2465 -5.1725 12 1 2.8860 3.1561 -5.2066 13 1 5.2911 3.0165 -5.4807 14 1 3.8817 1.1713 -6.1813 15 6 2.0036 -0.6353 -1.2259 16 1 1.2804 -0.5453 -2.0365 17 6 2.3029 -2.0889 -0.9645 18 6 2.4291 -2.5462 0.3337 19 6 2.6980 -3.8806 0.5741 20 6 2.8524 -4.7572 -0.4840 21 6 2.7324 -4.3013 -1.7828 22 6 2.4573 -2.9657 -2.0246 23 9 2.3403 -2.5187 -3.2942 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3633 -1.0276 -0.0023 26 1 -0.3633 0.5118 0.8911 27 1 2.0041 1.7977 1.0096 28 1 1.4218 2.0212 -0.6707 29 1 3.8089 2.1406 -0.9738 30 1 4.1140 0.8929 0.2769 31 1 6.0198 2.2207 -3.1144 32 1 2.3136 -1.8613 1.1609 33 1 2.7921 -4.2377 1.5889 34 1 3.0665 -5.7988 -0.2952 35 1 2.8525 -4.9863 -2.6090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259729274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:49 Heat of formation + Delta-G solvation = -15.327817 kcal Electronic energy + Delta-G solvation = -18668.928620 eV Core-core repulsion = 15774.093642 eV Total energy + Delta-G solvation = -2894.834978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.16007 -39.11615 -37.43357 -33.17585 -31.42793 -30.49655 -29.98222 -27.40840 -25.47461 -23.73129 -22.45188 -21.71788 -19.95651 -19.18372 -17.07458 -16.41795 -15.72598 -15.52260 -14.92410 -14.71411 -14.33325 -14.12135 -13.59969 -13.37422 -12.71716 -12.62623 -12.44116 -12.24814 -11.86115 -11.45318 -11.18002 -10.99138 -10.87458 -10.68323 -10.51312 -10.34951 -10.19586 -9.87956 -9.65456 -8.85166 -8.40467 -8.35098 -7.99666 -7.82781 -6.01222 -4.05700 1.65874 1.71453 3.32076 3.36470 3.39885 4.08204 4.41972 4.60490 4.88756 5.20336 5.28594 5.34091 5.43094 5.64711 5.72069 5.81122 5.86362 5.95142 6.18815 6.22285 6.27024 6.31462 6.44261 6.54422 6.59561 6.68938 6.83846 6.90423 7.11204 7.18032 7.41324 7.57020 7.64450 7.73762 7.86311 7.94638 8.42421 8.95014 9.57855 11.06493 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.008879 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.569421 B = 3152.888316 C = 3829.655419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.039 3.961 4 C -0.100 4.100 5 C 0.059 3.941 6 H 0.033 0.967 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.064 3.936 10 N -0.887 5.887 11 Si 0.889 3.111 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.105 3.895 16 H 0.060 0.940 17 C -0.084 4.084 18 C -0.072 4.072 19 C -0.143 4.143 20 C -0.109 4.109 21 C -0.165 4.165 22 C 0.103 3.897 23 F -0.131 7.131 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -7.612 6.093 11.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.245 5.245 3 C -0.089 4.089 4 C -0.139 4.139 5 C 0.040 3.960 6 H 0.052 0.948 7 C -0.548 4.548 8 H 0.072 0.928 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.717 3.283 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.003 4.003 16 H 0.078 0.922 17 C -0.086 4.086 18 C -0.090 4.090 19 C -0.162 4.162 20 C -0.127 4.127 21 C -0.184 4.184 22 C 0.084 3.916 23 F -0.109 7.109 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.890 -7.772 6.500 11.720 hybrid contribution -0.326 0.880 -1.950 2.164 sum -6.216 -6.892 4.550 10.336 Atomic orbital electron populations 1.22440 0.89443 1.01072 1.00091 1.64500 1.06629 1.16031 1.37361 1.23209 0.98090 0.88484 0.99077 1.22420 0.91956 1.02459 0.97063 1.19443 0.89987 0.92345 0.94244 0.94846 1.21128 1.02463 1.31062 1.00100 0.92795 1.24924 0.95242 0.96383 0.97257 1.69960 1.06159 1.39364 1.37056 0.86705 0.77297 0.79357 0.84973 1.20358 1.21260 1.20197 1.21573 0.99783 0.88998 0.89948 0.92247 1.20127 1.00033 0.95933 0.92480 1.21039 0.96437 0.94959 0.96561 1.21161 1.02356 0.93897 0.98756 1.20829 1.00570 0.99504 0.91836 1.21010 1.05093 0.94076 0.98210 1.17636 1.02327 0.92379 0.79299 1.91531 1.93140 1.89833 1.36392 0.95686 0.92266 0.92066 0.91921 0.94146 0.89671 0.94223 0.92933 0.84100 0.86200 0.86045 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.42 60.07 0.57 0.86 16 2 N -0.52 -9.84 3.79 -232.04 -0.88 -10.72 16 3 C 0.04 0.76 6.55 -1.90 -0.01 0.75 16 4 C -0.10 -2.34 6.12 -24.87 -0.15 -2.50 16 5 C 0.06 1.47 2.55 -90.42 -0.23 1.24 16 6 H 0.03 0.94 7.68 -51.93 -0.40 0.54 16 7 C -0.51 -13.98 8.53 -34.44 -0.29 -14.27 16 8 H 0.05 1.49 7.35 -52.49 -0.39 1.11 16 9 C 0.06 1.76 5.08 -17.82 -0.09 1.67 16 10 N -0.89 -25.32 11.90 55.43 0.66 -24.66 16 11 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 C 0.11 2.26 2.05 -67.71 -0.14 2.12 16 16 H 0.06 1.37 6.81 -51.93 -0.35 1.02 16 17 C -0.08 -1.66 4.87 -104.56 -0.51 -2.17 16 18 C -0.07 -1.22 9.35 -39.59 -0.37 -1.59 16 19 C -0.14 -2.05 10.05 -39.57 -0.40 -2.45 16 20 C -0.11 -1.52 10.04 -39.59 -0.40 -1.92 16 21 C -0.16 -2.64 10.03 -39.52 -0.40 -3.04 16 22 C 0.10 2.02 7.25 -39.42 -0.29 1.73 16 23 F -0.13 -2.83 16.70 2.25 0.04 -2.80 16 24 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.82 7.99 -51.93 -0.42 0.40 16 29 H 0.08 2.20 6.52 -51.93 -0.34 1.86 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.14 2.34 7.12 -52.48 -0.37 1.97 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -28.71 291.66 -8.29 -37.00 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.78 Total: -0.15 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -2.71 Total: -19.55 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.22 Total: -35.38 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.71 -8.29 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.672 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds