Wall clock time and date at job start Mon Mar 30 2020 07:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48537 * 110.99943 * 2 1 4 4 C 1.54936 * 103.37541 * 200.36403 * 3 2 1 5 5 C 1.54593 * 102.92368 * 37.33107 * 4 3 2 6 6 H 1.08999 * 110.30665 * 219.02471 * 5 4 3 7 7 C 1.50702 * 110.30616 * 96.95844 * 5 4 3 8 8 H 1.07998 * 119.99814 * 241.45142 * 7 5 4 9 9 C 1.37875 * 120.00316 * 61.45845 * 7 5 4 10 10 N 1.31512 * 119.99870 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00278 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47412 * 59.99429 * 11 9 7 13 13 H 1.48499 * 109.47226 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46738 * 299.99226 * 11 9 7 15 15 C 1.48064 * 111.16437 * 242.60683 * 2 1 3 16 16 H 1.09000 * 109.92284 * 26.22640 * 15 2 1 17 17 C 1.50699 * 109.99610 * 265.08152 * 15 2 1 18 18 C 1.38222 * 120.00958 * 341.98270 * 17 15 2 19 19 C 1.38228 * 120.02756 * 179.72802 * 18 17 15 20 20 C 1.38271 * 120.04546 * 0.54902 * 19 18 17 21 21 C 1.38171 * 120.02738 * 359.73076 * 20 19 18 22 22 C 1.38434 * 120.01851 * 162.26387 * 17 15 2 23 23 F 1.35101 * 120.02416 * 0.02562 * 22 17 15 24 24 H 1.08995 * 109.46825 * 59.87448 * 1 2 3 25 25 H 1.08996 * 109.46826 * 179.87305 * 1 2 3 26 26 H 1.08994 * 109.46848 * 299.86969 * 1 2 3 27 27 H 1.09002 * 110.66696 * 81.84409 * 3 2 1 28 28 H 1.09001 * 110.66368 * 318.88248 * 3 2 1 29 29 H 1.09001 * 110.72276 * 155.69044 * 4 3 2 30 30 H 1.09000 * 110.72379 * 278.79256 * 4 3 2 31 31 H 0.97007 * 120.00223 * 180.02562 * 10 9 7 32 32 H 1.08007 * 119.98586 * 359.97438 * 18 17 15 33 33 H 1.07995 * 119.97271 * 180.27403 * 19 18 17 34 34 H 1.08003 * 119.98568 * 179.74644 * 20 19 18 35 35 H 1.07997 * 120.01031 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4490 1.2149 -0.5245 5 6 3.3001 0.1092 -1.5947 6 1 4.1518 -0.5700 -1.5578 7 6 3.1796 0.7217 -2.9663 8 1 2.2870 0.5614 -3.5527 9 6 4.2089 1.4867 -3.4726 10 7 5.2957 1.6822 -2.7583 11 14 4.0593 2.2465 -5.1725 12 1 2.8860 3.1561 -5.2066 13 1 5.2911 3.0165 -5.4807 14 1 3.8817 1.1713 -6.1813 15 6 2.0036 -0.6353 -1.2259 16 1 1.2804 -0.5453 -2.0365 17 6 2.3029 -2.0889 -0.9645 18 6 2.4291 -2.5462 0.3337 19 6 2.6980 -3.8806 0.5741 20 6 2.8524 -4.7572 -0.4840 21 6 2.7324 -4.3013 -1.7828 22 6 2.4573 -2.9657 -2.0246 23 9 2.3403 -2.5187 -3.2942 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3633 -1.0276 -0.0023 26 1 -0.3633 0.5118 0.8911 27 1 2.0041 1.7977 1.0096 28 1 1.4218 2.0212 -0.6707 29 1 3.8089 2.1406 -0.9738 30 1 4.1140 0.8929 0.2769 31 1 6.0198 2.2207 -3.1144 32 1 2.3136 -1.8613 1.1609 33 1 2.7921 -4.2377 1.5889 34 1 3.0665 -5.7988 -0.2952 35 1 2.8525 -4.9863 -2.6090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259729274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:49 Heat of formation + Delta-G solvation = -31.268565 kcal Electronic energy + Delta-G solvation = -18669.619862 eV Core-core repulsion = 15774.093642 eV Total energy + Delta-G solvation = -2895.526221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.70964 -40.61562 -38.87750 -35.16678 -32.85900 -32.27929 -31.27459 -29.11712 -27.15281 -25.49147 -23.81291 -23.12036 -21.68563 -20.85704 -18.62507 -18.28516 -17.14736 -16.98254 -16.82349 -16.36286 -15.88051 -15.67405 -14.92413 -14.89043 -14.45082 -14.13821 -13.97577 -13.86868 -13.27301 -12.96719 -12.92820 -12.60031 -12.57190 -12.39026 -12.27034 -12.07662 -11.80673 -11.68266 -11.42716 -10.90708 -10.47649 -9.70564 -9.39943 -9.39165 -8.15670 -6.26804 0.35079 0.44710 1.35551 1.37287 1.44817 2.38250 2.80637 3.08900 3.13154 3.55905 3.90505 4.07420 4.13441 4.18268 4.32022 4.44368 4.49931 4.53955 4.65519 4.70615 4.76865 4.88837 4.96925 5.13339 5.18910 5.28117 5.33968 5.37776 5.52649 5.59511 5.64147 5.78862 5.82713 5.96697 6.13938 6.22483 6.36570 6.80118 7.39535 8.91242 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.008879 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.569421 B = 3152.888316 C = 3829.655419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.513 5.513 3 C 0.048 3.952 4 C -0.096 4.096 5 C 0.057 3.943 6 H -0.008 1.008 7 C -0.525 4.525 8 H 0.041 0.959 9 C 0.018 3.982 10 N -0.912 5.912 11 Si 0.948 3.052 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.117 3.883 16 H 0.031 0.969 17 C -0.113 4.113 18 C -0.079 4.079 19 C -0.130 4.130 20 C -0.095 4.095 21 C -0.164 4.164 22 C 0.062 3.938 23 F -0.157 7.157 24 H 0.015 0.985 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.032 0.968 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.262 0.738 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.976 -9.110 7.713 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.236 5.236 3 C -0.079 4.079 4 C -0.135 4.135 5 C 0.038 3.962 6 H 0.010 0.990 7 C -0.563 4.563 8 H 0.059 0.941 9 C -0.181 4.181 10 N -0.551 5.551 11 Si 0.773 3.227 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.203 1.203 15 C 0.009 3.991 16 H 0.049 0.951 17 C -0.114 4.114 18 C -0.097 4.097 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.183 4.183 22 C 0.042 3.958 23 F -0.136 7.136 24 H 0.034 0.966 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.669 -9.272 8.127 14.018 hybrid contribution -0.070 1.242 -2.400 2.703 sum -6.739 -8.030 5.727 11.946 Atomic orbital electron populations 1.22536 0.87203 1.02144 1.01077 1.64566 1.08619 1.14976 1.35453 1.23137 0.95234 0.89133 1.00428 1.22238 0.94541 1.00318 0.96410 1.19312 0.90523 0.92397 0.93992 0.99023 1.21360 1.02143 1.31359 1.01402 0.94069 1.25642 0.94952 0.96826 1.00727 1.70071 1.06650 1.39872 1.38499 0.85775 0.77739 0.78566 0.80616 1.19477 1.20344 1.20291 1.21197 0.97137 0.90607 0.90194 0.95098 1.20095 1.02503 0.94805 0.94023 1.21172 0.96711 0.96625 0.95174 1.21622 0.99726 0.92465 1.00975 1.21369 0.97918 1.01574 0.90413 1.21352 1.04003 0.92661 1.00277 1.18153 1.04981 0.94257 0.78392 1.91452 1.93711 1.90374 1.38026 0.96609 0.91233 0.89029 0.88621 0.94986 0.92603 0.94283 0.92872 0.83822 0.82152 0.81536 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.42 127.69 1.20 1.77 16 2 N -0.51 -19.08 3.79 -888.03 -3.36 -22.44 16 3 C 0.05 1.88 6.55 86.65 0.57 2.44 16 4 C -0.10 -4.65 6.12 31.80 0.19 -4.46 16 5 C 0.06 3.00 2.55 -10.66 -0.03 2.97 16 6 H -0.01 -0.50 7.68 -2.39 -0.02 -0.52 16 7 C -0.52 -30.26 8.53 25.60 0.22 -30.04 16 8 H 0.04 2.41 7.35 -2.91 -0.02 2.39 16 9 C 0.02 1.02 5.08 84.65 0.43 1.45 16 10 N -0.91 -53.89 11.90 21.45 0.26 -53.63 16 11 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 15 C 0.12 5.22 2.05 44.28 0.09 5.31 16 16 H 0.03 1.52 6.81 -2.39 -0.02 1.50 16 17 C -0.11 -4.51 4.87 -19.82 -0.10 -4.61 16 18 C -0.08 -2.55 9.35 22.26 0.21 -2.34 16 19 C -0.13 -3.21 10.05 22.28 0.22 -2.99 16 20 C -0.10 -2.25 10.04 22.26 0.22 -2.03 16 21 C -0.16 -4.99 10.03 22.31 0.22 -4.76 16 22 C 0.06 2.46 7.25 22.37 0.16 2.62 16 23 F -0.16 -7.22 16.70 44.97 0.75 -6.47 16 24 H 0.02 0.50 8.00 -2.39 -0.02 0.48 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.03 1.29 7.99 -2.39 -0.02 1.28 16 29 H 0.06 3.00 6.52 -2.39 -0.02 2.98 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 32 H 0.14 4.50 7.12 -2.91 -0.02 4.48 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -66.13 291.66 4.36 -61.77 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.07 Total: 8.17 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 3.62 Total: -34.66 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -3.11 Total: -76.07 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.75 Total: -6.47 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -66.13 4.36 -61.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.504 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds