Wall clock time and date at job start Mon Mar 30 2020 07:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48541 * 110.99805 * 2 1 4 4 C 1.54938 * 103.22605 * 200.28158 * 3 2 1 5 5 C 1.54595 * 102.92210 * 37.41378 * 4 3 2 6 6 H 1.08998 * 110.31044 * 219.02980 * 5 4 3 7 7 C 1.50703 * 110.31006 * 96.95760 * 5 4 3 8 8 H 1.07994 * 119.99788 * 241.45430 * 7 5 4 9 9 C 1.37877 * 119.99532 * 61.45330 * 7 5 4 10 10 N 1.31513 * 120.00385 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99678 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47427 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46809 * 120.00296 * 11 9 7 14 14 H 1.48496 * 109.47470 * 239.99975 * 11 9 7 15 15 C 1.47902 * 110.99844 * 242.60590 * 2 1 3 16 16 H 1.08997 * 109.91885 * 26.48615 * 15 2 1 17 17 C 1.50700 * 109.91482 * 265.19396 * 15 2 1 18 18 C 1.38270 * 119.98420 * 141.45970 * 17 15 2 19 19 C 1.38225 * 120.04678 * 180.02562 * 18 17 15 20 20 C 1.38220 * 120.02946 * 359.97438 * 19 18 17 21 21 C 1.38435 * 119.97075 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.02549 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98759 * 321.17798 * 17 15 2 24 24 H 1.09002 * 109.47401 * 59.87334 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.87347 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.87480 * 1 2 3 27 27 H 1.09005 * 110.66282 * 318.71281 * 3 2 1 28 28 H 1.08997 * 110.66799 * 81.67608 * 3 2 1 29 29 H 1.08994 * 110.72189 * 155.77312 * 4 3 2 30 30 H 1.08997 * 110.72310 * 279.05350 * 4 3 2 31 31 H 0.97004 * 120.00469 * 179.97438 * 10 9 7 32 32 H 1.07996 * 119.97497 * 359.97004 * 18 17 15 33 33 H 1.08002 * 119.98237 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.01125 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.01306 * 0.02562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2982 0.1055 -1.5931 6 1 4.1478 -0.5764 -1.5553 7 6 3.1811 0.7182 -2.9650 8 1 2.2887 0.5605 -3.5524 9 6 4.2133 1.4802 -3.4700 10 7 5.3002 1.6718 -2.7548 11 14 4.0684 2.2391 -5.1707 12 1 2.7569 1.8758 -5.7649 13 1 4.1705 3.7168 -5.0636 14 1 5.1625 1.7289 -6.0353 15 6 1.9990 -0.6353 -1.2260 16 1 1.2758 -0.5403 -2.0359 17 6 2.2938 -2.0898 -0.9641 18 6 2.0254 -3.0353 -1.9366 19 6 2.2948 -4.3698 -1.6976 20 6 2.8333 -4.7605 -0.4860 21 6 3.1024 -3.8148 0.4884 22 9 3.6292 -4.1954 1.6728 23 6 2.8375 -2.4773 0.2457 24 1 -0.3634 0.5158 -0.8888 25 1 -0.3633 0.5119 0.8911 26 1 -0.3633 -1.0277 -0.0022 27 1 1.4236 2.0205 -0.6730 28 1 2.0013 1.7988 1.0091 29 1 3.8122 2.1353 -0.9716 30 1 4.1115 0.8838 0.2786 31 1 6.0265 2.2076 -3.1102 32 1 1.6042 -2.7310 -2.8833 33 1 2.0843 -5.1075 -2.4578 34 1 3.0432 -5.8034 -0.2994 35 1 3.0509 -1.7381 1.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259813301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:53 Heat of formation + Delta-G solvation = -19.910050 kcal Electronic energy + Delta-G solvation = -18327.367067 eV Core-core repulsion = 15432.333388 eV Total energy + Delta-G solvation = -2895.033679 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.49852 -39.28036 -37.38187 -33.22247 -31.44146 -30.47127 -30.07987 -27.49013 -25.55039 -23.76654 -22.49794 -21.75178 -20.06680 -19.26396 -17.04352 -16.33033 -15.79217 -15.69603 -15.18767 -14.83807 -14.68153 -14.17096 -13.63915 -13.32767 -12.83401 -12.65463 -12.52529 -12.32614 -11.92707 -11.43430 -11.21854 -11.07842 -10.89111 -10.68437 -10.52785 -10.46619 -10.22251 -9.93469 -9.66012 -8.90476 -8.43292 -8.39267 -8.14754 -7.83608 -6.08239 -4.14101 1.60377 1.69204 3.24105 3.32962 3.35411 4.04102 4.35482 4.64640 4.67782 5.12109 5.23556 5.30593 5.51634 5.64008 5.69599 5.78184 5.87730 5.93148 6.16406 6.17844 6.22366 6.29721 6.41227 6.45515 6.58502 6.64501 6.71946 7.01173 7.06028 7.14945 7.36074 7.54260 7.59984 7.73541 7.81951 7.87956 8.35179 8.87617 9.50350 10.99277 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.007332 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.336224 B = 3817.980224 C = 4234.681655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.522 5.522 3 C 0.038 3.962 4 C -0.101 4.101 5 C 0.055 3.945 6 H 0.036 0.964 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.064 3.936 10 N -0.884 5.884 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.101 3.899 16 H 0.060 0.940 17 C -0.016 4.016 18 C -0.128 4.128 19 C -0.098 4.098 20 C -0.171 4.171 21 C 0.085 3.915 22 F -0.148 7.148 23 C -0.124 4.124 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.737 -6.920 3.898 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.245 5.245 3 C -0.089 4.089 4 C -0.140 4.140 5 C 0.036 3.964 6 H 0.055 0.945 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.138 4.138 10 N -0.522 5.522 11 Si 0.717 3.283 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.007 4.007 16 H 0.078 0.922 17 C -0.017 4.017 18 C -0.147 4.147 19 C -0.116 4.116 20 C -0.190 4.190 21 C 0.066 3.934 22 F -0.127 7.127 23 C -0.143 4.143 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.393 -7.117 4.408 10.534 hybrid contribution -0.197 0.785 -1.464 1.673 sum -6.590 -6.333 2.944 9.602 Atomic orbital electron populations 1.22436 0.89424 1.01059 1.00043 1.64563 1.06716 1.15990 1.37277 1.23227 0.98046 0.88561 0.99101 1.22431 0.92025 1.02412 0.97093 1.19502 0.90155 0.92463 0.94236 0.94548 1.21213 1.02370 1.31588 1.00189 0.92671 1.24947 0.95249 0.96300 0.97318 1.69978 1.06019 1.39257 1.36933 0.86585 0.78100 0.79026 0.84608 1.19827 1.20997 1.20949 1.21709 0.99762 0.89208 0.89999 0.92231 1.19865 0.93994 0.95708 0.92097 1.21123 1.01533 0.92504 0.99515 1.20848 0.98620 0.96060 0.96038 1.20954 1.04693 0.99019 0.94371 1.17772 0.99968 0.93652 0.81982 1.91448 1.84395 1.92001 1.44872 1.21011 1.00549 0.93571 0.99137 0.95681 0.92157 0.92266 0.94147 0.91937 0.89666 0.94208 0.92930 0.85676 0.85711 0.85706 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.41 60.07 0.57 0.87 16 2 N -0.52 -9.72 4.41 -232.15 -1.02 -10.74 16 3 C 0.04 0.74 6.56 -1.89 -0.01 0.72 16 4 C -0.10 -2.31 6.12 -24.87 -0.15 -2.46 16 5 C 0.06 1.33 2.54 -90.41 -0.23 1.10 16 6 H 0.04 0.98 7.68 -51.93 -0.40 0.58 16 7 C -0.52 -13.48 8.53 -34.44 -0.29 -13.78 16 8 H 0.06 1.43 7.35 -52.49 -0.39 1.04 16 9 C 0.06 1.71 5.08 -17.82 -0.09 1.62 16 10 N -0.88 -24.58 11.91 55.43 0.66 -23.92 16 11 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.10 2.05 2.32 -67.79 -0.16 1.90 16 16 H 0.06 1.24 6.84 -51.93 -0.35 0.88 16 17 C -0.02 -0.30 4.75 -104.63 -0.50 -0.79 16 18 C -0.13 -2.13 9.68 -39.57 -0.38 -2.52 16 19 C -0.10 -1.41 10.04 -39.59 -0.40 -1.80 16 20 C -0.17 -2.55 10.03 -39.52 -0.40 -2.94 16 21 C 0.09 1.45 7.30 -39.42 -0.29 1.16 16 22 F -0.15 -2.51 17.27 2.25 0.04 -2.47 16 23 C -0.12 -2.27 9.31 -39.51 -0.37 -2.64 16 24 H 0.02 0.39 7.99 -51.93 -0.42 -0.02 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.80 8.00 -51.93 -0.42 0.38 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 2.15 6.52 -51.93 -0.34 1.82 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.13 1.95 8.05 -52.49 -0.42 1.53 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.14 2.63 7.70 -52.49 -0.40 2.23 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -27.31 293.22 -8.43 -35.75 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.81 Total: 0.91 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.70 Total: -19.56 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.36 Total: -34.66 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.31 -8.43 -35.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.836 kcal (2) G-P(sol) polarization free energy of solvation -27.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds