Wall clock time and date at job start Mon Mar 30 2020 07:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48541 * 110.99805 * 2 1 4 4 C 1.54938 * 103.22605 * 200.28158 * 3 2 1 5 5 C 1.54595 * 102.92210 * 37.41378 * 4 3 2 6 6 H 1.08998 * 110.31044 * 219.02980 * 5 4 3 7 7 C 1.50703 * 110.31006 * 96.95760 * 5 4 3 8 8 H 1.07994 * 119.99788 * 241.45430 * 7 5 4 9 9 C 1.37877 * 119.99532 * 61.45330 * 7 5 4 10 10 N 1.31513 * 120.00385 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99678 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47427 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46809 * 120.00296 * 11 9 7 14 14 H 1.48496 * 109.47470 * 239.99975 * 11 9 7 15 15 C 1.47902 * 110.99844 * 242.60590 * 2 1 3 16 16 H 1.08997 * 109.91885 * 26.48615 * 15 2 1 17 17 C 1.50700 * 109.91482 * 265.19396 * 15 2 1 18 18 C 1.38270 * 119.98420 * 141.45970 * 17 15 2 19 19 C 1.38225 * 120.04678 * 180.02562 * 18 17 15 20 20 C 1.38220 * 120.02946 * 359.97438 * 19 18 17 21 21 C 1.38435 * 119.97075 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.02549 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98759 * 321.17798 * 17 15 2 24 24 H 1.09002 * 109.47401 * 59.87334 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.87347 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.87480 * 1 2 3 27 27 H 1.09005 * 110.66282 * 318.71281 * 3 2 1 28 28 H 1.08997 * 110.66799 * 81.67608 * 3 2 1 29 29 H 1.08994 * 110.72189 * 155.77312 * 4 3 2 30 30 H 1.08997 * 110.72310 * 279.05350 * 4 3 2 31 31 H 0.97004 * 120.00469 * 179.97438 * 10 9 7 32 32 H 1.07996 * 119.97497 * 359.97004 * 18 17 15 33 33 H 1.08002 * 119.98237 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.01125 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.01306 * 0.02562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2982 0.1055 -1.5931 6 1 4.1478 -0.5764 -1.5553 7 6 3.1811 0.7182 -2.9650 8 1 2.2887 0.5605 -3.5524 9 6 4.2133 1.4802 -3.4700 10 7 5.3002 1.6718 -2.7548 11 14 4.0684 2.2391 -5.1707 12 1 2.7569 1.8758 -5.7649 13 1 4.1705 3.7168 -5.0636 14 1 5.1625 1.7289 -6.0353 15 6 1.9990 -0.6353 -1.2260 16 1 1.2758 -0.5403 -2.0359 17 6 2.2938 -2.0898 -0.9641 18 6 2.0254 -3.0353 -1.9366 19 6 2.2948 -4.3698 -1.6976 20 6 2.8333 -4.7605 -0.4860 21 6 3.1024 -3.8148 0.4884 22 9 3.6292 -4.1954 1.6728 23 6 2.8375 -2.4773 0.2457 24 1 -0.3634 0.5158 -0.8888 25 1 -0.3633 0.5119 0.8911 26 1 -0.3633 -1.0277 -0.0022 27 1 1.4236 2.0205 -0.6730 28 1 2.0013 1.7988 1.0091 29 1 3.8122 2.1353 -0.9716 30 1 4.1115 0.8838 0.2786 31 1 6.0265 2.2076 -3.1102 32 1 1.6042 -2.7310 -2.8833 33 1 2.0843 -5.1075 -2.4578 34 1 3.0432 -5.8034 -0.2994 35 1 3.0509 -1.7381 1.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259813301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:52 Heat of formation + Delta-G solvation = -34.310735 kcal Electronic energy + Delta-G solvation = -18327.991527 eV Core-core repulsion = 15432.333388 eV Total energy + Delta-G solvation = -2895.658139 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.81354 -40.74858 -38.82139 -35.13219 -32.85080 -32.20683 -31.37689 -29.14945 -27.17866 -25.46418 -23.83764 -23.13491 -21.76375 -20.87822 -18.60854 -18.06892 -17.16626 -16.98907 -16.73460 -16.49504 -16.15763 -15.83904 -15.04192 -14.63523 -14.47155 -14.11220 -14.00813 -13.95012 -13.30960 -12.92454 -12.88725 -12.57069 -12.55912 -12.42670 -12.22255 -12.06462 -11.86967 -11.70016 -11.34708 -10.87145 -10.46222 -9.72790 -9.49880 -9.33051 -8.13055 -6.25464 0.29971 0.41388 1.39232 1.41938 1.52032 2.41054 2.73492 3.16524 3.20869 3.35932 3.87867 4.04746 4.16613 4.21316 4.31434 4.44564 4.46880 4.50340 4.64323 4.71935 4.78624 4.88822 4.99318 5.06325 5.19971 5.21662 5.29257 5.37136 5.45257 5.58229 5.67434 5.81735 5.84047 5.98948 6.07687 6.28445 6.38181 6.84184 7.42368 8.94239 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.007332 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.336224 B = 3817.980224 C = 4234.681655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.524 5.524 3 C 0.048 3.952 4 C -0.098 4.098 5 C 0.053 3.947 6 H -0.003 1.003 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.016 3.984 10 N -0.915 5.915 11 Si 0.951 3.049 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.113 3.887 16 H 0.052 0.948 17 C -0.039 4.039 18 C -0.137 4.137 19 C -0.085 4.085 20 C -0.161 4.161 21 C 0.073 3.927 22 F -0.151 7.151 23 C -0.139 4.139 24 H 0.024 0.976 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.133 0.867 33 H 0.166 0.834 34 H 0.158 0.842 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 -8.298 3.331 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.247 5.247 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.034 3.966 6 H 0.015 0.985 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.183 4.183 10 N -0.554 5.554 11 Si 0.777 3.223 12 H -0.189 1.189 13 H -0.207 1.207 14 H -0.208 1.208 15 C 0.005 3.995 16 H 0.070 0.930 17 C -0.040 4.040 18 C -0.156 4.156 19 C -0.103 4.103 20 C -0.179 4.179 21 C 0.054 3.946 22 F -0.130 7.130 23 C -0.158 4.158 24 H 0.043 0.957 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.183 0.817 34 H 0.176 0.824 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.884 -8.500 3.847 12.215 hybrid contribution 0.280 1.148 -1.265 1.732 sum -7.604 -7.352 2.581 10.887 Atomic orbital electron populations 1.22512 0.87141 1.02096 1.01089 1.64606 1.08824 1.15023 1.36285 1.23122 0.95388 0.89300 1.00108 1.22255 0.94349 1.00593 0.96513 1.19387 0.90869 0.92362 0.93992 0.98517 1.21510 1.02257 1.31462 1.01181 0.92734 1.25702 0.94980 0.96850 1.00814 1.70107 1.06706 1.40023 1.38561 0.85603 0.78244 0.78117 0.80309 1.18937 1.20684 1.20835 1.21416 0.97429 0.90260 0.90414 0.93004 1.19797 0.95888 0.95154 0.93121 1.21350 1.01559 0.93394 0.99251 1.21267 0.96662 0.95726 0.96622 1.21354 1.02873 1.00151 0.93534 1.17936 1.00503 0.93604 0.82580 1.91439 1.84494 1.91902 1.45128 1.20914 1.01690 0.94247 0.98956 0.95692 0.89960 0.91272 0.94448 0.89555 0.92566 0.95021 0.93006 0.84928 0.81671 0.82419 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.41 127.69 1.20 1.79 16 2 N -0.52 -19.29 4.41 -888.39 -3.91 -23.20 16 3 C 0.05 1.86 6.56 86.65 0.57 2.43 16 4 C -0.10 -4.67 6.12 31.80 0.19 -4.48 16 5 C 0.05 2.63 2.54 -10.66 -0.03 2.61 16 6 H 0.00 -0.19 7.68 -2.39 -0.02 -0.21 16 7 C -0.53 -28.11 8.53 25.60 0.22 -27.90 16 8 H 0.05 2.85 7.35 -2.91 -0.02 2.83 16 9 C 0.02 0.86 5.08 84.65 0.43 1.29 16 10 N -0.91 -52.46 11.91 21.45 0.26 -52.21 16 11 Si 0.95 42.68 29.54 68.60 2.03 44.70 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 C 0.11 4.63 2.32 44.31 0.10 4.74 16 16 H 0.05 2.17 6.84 -2.39 -0.02 2.15 16 17 C -0.04 -1.45 4.75 -19.87 -0.09 -1.54 16 18 C -0.14 -4.35 9.68 22.27 0.22 -4.13 16 19 C -0.09 -2.17 10.04 22.26 0.22 -1.94 16 20 C -0.16 -4.27 10.03 22.31 0.22 -4.05 16 21 C 0.07 2.38 7.30 22.38 0.16 2.55 16 22 F -0.15 -4.96 17.27 44.97 0.78 -4.18 16 23 C -0.14 -5.13 9.31 22.31 0.21 -4.92 16 24 H 0.02 0.74 7.99 -2.39 -0.02 0.72 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.04 1.46 8.00 -2.38 -0.02 1.44 16 28 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.06 2.97 6.52 -2.39 -0.02 2.95 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.13 3.93 8.05 -2.91 -0.02 3.91 16 33 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.12 4.82 7.70 -2.91 -0.02 4.80 16 Total: -1.00 -60.17 293.22 3.84 -56.33 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.07 Total: 12.11 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 3.63 Total: -33.56 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -3.66 Total: -75.41 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.78 Total: -4.18 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -60.17 3.84 -56.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.019 kcal (2) G-P(sol) polarization free energy of solvation -60.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds