Wall clock time and date at job start Mon Mar 30 2020 07:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46879 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00009 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46987 * 184.01978 * 9 7 2 11 11 H 1.08991 * 109.47126 * 55.68315 * 10 9 7 12 12 C 1.50698 * 109.47386 * 295.67563 * 10 9 7 13 13 C 1.34512 * 125.79017 * 99.71582 * 12 10 9 14 14 C 1.41378 * 106.84325 * 179.89143 * 13 12 10 15 15 C 1.34512 * 106.83968 * 0.37843 * 14 13 12 16 16 O 1.34296 * 108.42247 * 359.76719 * 15 14 13 17 17 N 1.46899 * 109.46701 * 175.68095 * 10 9 7 18 18 C 1.46852 * 110.99936 * 297.83724 * 17 10 9 19 19 C 1.53037 * 109.52453 * 174.16263 * 18 17 10 20 20 C 1.53120 * 109.27806 * 59.18157 * 19 18 17 21 21 C 1.53117 * 109.15704 * 302.34514 * 20 19 18 22 22 C 1.46848 * 110.99890 * 173.63180 * 17 10 9 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46711 * 64.01842 * 9 7 2 25 25 H 1.08999 * 109.47106 * 304.02138 * 9 7 2 26 26 H 1.08003 * 126.57780 * 0.02642 * 13 12 10 27 27 H 1.08004 * 126.58227 * 180.12154 * 14 13 12 28 28 H 1.08003 * 125.79141 * 179.75462 * 15 14 13 29 29 H 1.08992 * 109.46462 * 294.17959 * 18 17 10 30 30 H 1.09004 * 109.45846 * 54.14700 * 18 17 10 31 31 H 1.09004 * 109.50487 * 299.23867 * 19 18 17 32 32 H 1.08991 * 109.53433 * 179.14263 * 19 18 17 33 33 H 1.09003 * 109.52180 * 182.44437 * 20 19 18 34 34 H 1.08994 * 109.57508 * 62.27996 * 20 19 18 35 35 H 1.09000 * 109.50944 * 297.71093 * 21 20 19 36 36 H 1.09008 * 109.53364 * 177.61356 * 21 20 19 37 37 H 1.08993 * 109.46136 * 305.84863 * 22 17 10 38 38 H 1.08999 * 109.46546 * 65.83254 * 22 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2422 -3.6603 0.1032 11 1 2.8663 -3.5289 0.9871 12 6 3.1124 -3.6869 -1.1268 13 6 4.3635 -3.2010 -1.2161 14 6 4.8013 -3.4372 -2.5394 15 6 3.7885 -4.0459 -3.1822 16 8 2.7682 -4.1946 -2.3217 17 7 1.5044 -4.9261 0.2085 18 6 0.6829 -4.9568 1.4253 19 6 -0.1791 -6.2214 1.4288 20 6 0.7295 -7.4526 1.3728 21 6 1.6085 -7.3720 0.1217 22 6 2.4187 -6.0741 0.1561 23 1 -0.4851 0.8400 -0.0004 24 1 0.6791 -2.5894 -0.9219 25 1 0.5717 -2.5258 0.8537 26 1 4.9264 -2.7240 -0.4274 27 1 5.7628 -3.1752 -2.9558 28 1 3.7947 -4.3613 -4.2151 29 1 1.3313 -4.9569 2.3014 30 1 0.0385 -4.0780 1.4507 31 1 -0.8377 -6.2153 0.5603 32 1 -0.7776 -6.2519 2.3391 33 1 0.1186 -8.3545 1.3313 34 1 1.3612 -7.4810 2.2605 35 1 0.9781 -7.3840 -0.7675 36 1 2.2876 -8.2243 0.0978 37 1 3.0349 -6.0068 -0.7404 38 1 3.0589 -6.0691 1.0382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259817149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:08 Heat of formation + Delta-G solvation = 6.032542 kcal Electronic energy + Delta-G solvation = -18904.085255 eV Core-core repulsion = 16133.636837 eV Total energy + Delta-G solvation = -2770.448418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.89672 -38.62250 -34.66252 -32.53204 -32.24498 -30.60215 -29.90740 -27.86962 -25.04631 -23.12572 -22.67558 -21.24106 -20.83874 -19.49583 -19.15432 -16.95358 -16.22182 -15.58939 -15.06015 -14.61364 -14.45241 -14.16769 -13.94402 -13.36007 -13.10809 -12.76102 -12.43318 -12.14840 -12.11759 -11.96200 -11.73270 -11.17013 -11.00337 -10.91982 -10.66946 -10.57279 -10.35395 -10.08010 -10.00287 -9.46743 -9.26075 -9.10906 -8.34792 -7.77491 -7.66673 -6.00133 -4.01727 2.46659 3.29937 3.34123 3.38278 3.41178 3.71749 4.31326 4.51532 5.06016 5.10856 5.14710 5.34796 5.37245 5.53920 5.64934 5.67702 5.74330 5.84725 5.86557 5.92610 6.10706 6.11523 6.15827 6.25631 6.35923 6.42361 6.48702 6.56386 6.57830 6.62312 6.82164 7.12562 7.43897 7.55006 7.69485 7.79125 7.92017 8.06011 8.38182 9.02801 9.61497 11.11266 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.008176 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.054701 B = 3423.947318 C = 4549.247998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.035 3.965 10 C 0.164 3.836 11 H 0.059 0.941 12 C 0.054 3.946 13 C -0.226 4.226 14 C -0.212 4.212 15 C -0.069 4.069 16 O -0.162 6.162 17 N -0.532 5.532 18 C 0.053 3.947 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.114 4.114 22 C 0.055 3.945 23 H 0.261 0.739 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.192 0.808 29 H 0.027 0.973 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -12.458 -0.020 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.003 4.003 10 C 0.056 3.944 11 H 0.076 0.924 12 C 0.002 3.998 13 C -0.246 4.246 14 C -0.231 4.231 15 C -0.136 4.136 16 O -0.057 6.057 17 N -0.257 5.257 18 C -0.075 4.075 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.073 4.073 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.157 0.843 27 H 0.155 0.845 28 H 0.208 0.792 29 H 0.045 0.955 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.738 -12.505 -0.479 13.061 hybrid contribution 1.354 1.282 0.524 1.937 sum 5.091 -11.223 0.046 12.324 Atomic orbital electron populations 1.69951 1.05976 1.26729 1.50573 1.24940 0.94784 0.99072 0.95263 0.86679 0.79625 0.83226 0.78640 1.20219 1.21288 1.20268 1.21146 0.93146 0.90601 1.50910 0.92392 1.19216 0.93146 0.89282 0.98615 1.20599 0.93991 0.90785 0.88986 0.92359 1.22324 0.94013 0.97641 0.85782 1.21378 0.96471 1.08490 0.98214 1.21655 1.00640 1.05735 0.95118 1.23783 0.87133 1.06793 0.95933 1.84079 1.39111 1.63321 1.19219 1.61956 1.23899 1.01638 1.38163 1.22151 0.96331 0.99125 0.89867 1.21577 0.97844 0.93970 1.01891 1.21575 0.98195 0.98018 0.97921 1.21555 0.98550 0.96349 0.98695 1.22076 0.94122 0.90903 1.00246 0.92927 0.95509 0.94888 0.84321 0.84466 0.79164 0.95484 0.89119 0.91108 0.91933 0.92365 0.92652 0.91185 0.92286 0.91034 0.95701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.48 8.62 -34.44 -0.30 -14.78 16 8 H 0.06 1.58 6.78 -52.49 -0.36 1.22 16 9 C 0.03 0.89 4.40 -27.88 -0.12 0.77 16 10 C 0.16 3.49 1.98 -68.87 -0.14 3.36 16 11 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 12 C 0.05 1.13 3.93 -35.63 -0.14 0.99 16 13 C -0.23 -4.44 9.95 -39.70 -0.39 -4.84 16 14 C -0.21 -3.65 10.91 -39.71 -0.43 -4.08 16 15 C -0.07 -1.16 12.09 29.41 0.36 -0.80 16 16 O -0.16 -3.31 10.05 5.71 0.06 -3.25 16 17 N -0.53 -9.91 4.51 -228.09 -1.03 -10.94 16 18 C 0.05 0.90 5.26 -3.83 -0.02 0.88 16 19 C -0.11 -1.59 6.09 -26.65 -0.16 -1.76 16 20 C -0.12 -1.47 6.00 -26.61 -0.16 -1.63 16 21 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 22 C 0.05 0.88 5.19 -3.83 -0.02 0.86 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.88 6.12 -51.93 -0.32 0.56 16 26 H 0.14 2.60 8.06 -52.48 -0.42 2.18 16 27 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 28 H 0.19 2.35 8.06 -52.48 -0.42 1.93 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 1.72 5.99 -51.93 -0.31 1.41 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.07 1.21 6.24 -51.93 -0.32 0.89 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -30.41 303.71 -8.41 -38.82 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.94 Total: 0.97 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -1.79 Total: -21.07 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.29 Total: -36.84 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: 0.06 Total: -3.25 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.41 -8.41 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.856 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds