Wall clock time and date at job start Mon Mar 30 2020 07:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46879 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00009 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46987 * 184.01978 * 9 7 2 11 11 H 1.08991 * 109.47126 * 55.68315 * 10 9 7 12 12 C 1.50698 * 109.47386 * 295.67563 * 10 9 7 13 13 C 1.34512 * 125.79017 * 99.71582 * 12 10 9 14 14 C 1.41378 * 106.84325 * 179.89143 * 13 12 10 15 15 C 1.34512 * 106.83968 * 0.37843 * 14 13 12 16 16 O 1.34296 * 108.42247 * 359.76719 * 15 14 13 17 17 N 1.46899 * 109.46701 * 175.68095 * 10 9 7 18 18 C 1.46852 * 110.99936 * 297.83724 * 17 10 9 19 19 C 1.53037 * 109.52453 * 174.16263 * 18 17 10 20 20 C 1.53120 * 109.27806 * 59.18157 * 19 18 17 21 21 C 1.53117 * 109.15704 * 302.34514 * 20 19 18 22 22 C 1.46848 * 110.99890 * 173.63180 * 17 10 9 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46711 * 64.01842 * 9 7 2 25 25 H 1.08999 * 109.47106 * 304.02138 * 9 7 2 26 26 H 1.08003 * 126.57780 * 0.02642 * 13 12 10 27 27 H 1.08004 * 126.58227 * 180.12154 * 14 13 12 28 28 H 1.08003 * 125.79141 * 179.75462 * 15 14 13 29 29 H 1.08992 * 109.46462 * 294.17959 * 18 17 10 30 30 H 1.09004 * 109.45846 * 54.14700 * 18 17 10 31 31 H 1.09004 * 109.50487 * 299.23867 * 19 18 17 32 32 H 1.08991 * 109.53433 * 179.14263 * 19 18 17 33 33 H 1.09003 * 109.52180 * 182.44437 * 20 19 18 34 34 H 1.08994 * 109.57508 * 62.27996 * 20 19 18 35 35 H 1.09000 * 109.50944 * 297.71093 * 21 20 19 36 36 H 1.09008 * 109.53364 * 177.61356 * 21 20 19 37 37 H 1.08993 * 109.46136 * 305.84863 * 22 17 10 38 38 H 1.08999 * 109.46546 * 65.83254 * 22 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2422 -3.6603 0.1032 11 1 2.8663 -3.5289 0.9871 12 6 3.1124 -3.6869 -1.1268 13 6 4.3635 -3.2010 -1.2161 14 6 4.8013 -3.4372 -2.5394 15 6 3.7885 -4.0459 -3.1822 16 8 2.7682 -4.1946 -2.3217 17 7 1.5044 -4.9261 0.2085 18 6 0.6829 -4.9568 1.4253 19 6 -0.1791 -6.2214 1.4288 20 6 0.7295 -7.4526 1.3728 21 6 1.6085 -7.3720 0.1217 22 6 2.4187 -6.0741 0.1561 23 1 -0.4851 0.8400 -0.0004 24 1 0.6791 -2.5894 -0.9219 25 1 0.5717 -2.5258 0.8537 26 1 4.9264 -2.7240 -0.4274 27 1 5.7628 -3.1752 -2.9558 28 1 3.7947 -4.3613 -4.2151 29 1 1.3313 -4.9569 2.3014 30 1 0.0385 -4.0780 1.4507 31 1 -0.8377 -6.2153 0.5603 32 1 -0.7776 -6.2519 2.3391 33 1 0.1186 -8.3545 1.3313 34 1 1.3612 -7.4810 2.2605 35 1 0.9781 -7.3840 -0.7675 36 1 2.2876 -8.2243 0.0978 37 1 3.0349 -6.0068 -0.7404 38 1 3.0589 -6.0691 1.0382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259817149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:07 Heat of formation + Delta-G solvation = -12.373179 kcal Electronic energy + Delta-G solvation = -18904.883387 eV Core-core repulsion = 16133.636837 eV Total energy + Delta-G solvation = -2771.246550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.37007 -39.98035 -36.28159 -34.46872 -33.70009 -31.86528 -31.46888 -29.58289 -26.77139 -24.71810 -23.96657 -22.77167 -22.37682 -20.85849 -20.52738 -18.73297 -17.93464 -17.15067 -16.65698 -16.39853 -15.96802 -15.39498 -15.31338 -14.75063 -14.44320 -14.19851 -14.14795 -13.84352 -13.59051 -13.36451 -13.07481 -12.96243 -12.84291 -12.51902 -12.23631 -12.11234 -11.78077 -11.54798 -11.38600 -11.15674 -11.06873 -10.66225 -10.54777 -9.23219 -9.16195 -8.19779 -6.28999 1.00939 1.37860 1.40847 1.48340 1.85704 2.29502 2.39575 2.94830 3.14484 3.83969 3.92125 4.03648 4.09344 4.24477 4.33238 4.35394 4.41596 4.46902 4.63215 4.66250 4.73792 4.89010 4.95848 5.01817 5.06039 5.09010 5.13985 5.23770 5.26023 5.33672 5.45303 5.50999 5.58004 5.73650 5.77576 6.06211 6.19409 6.32023 6.50074 6.84176 7.38576 8.92313 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.008176 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.054701 B = 3423.947318 C = 4549.247998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.048 3.952 10 C 0.174 3.826 11 H 0.053 0.947 12 C 0.022 3.978 13 C -0.233 4.233 14 C -0.219 4.219 15 C -0.060 4.060 16 O -0.184 6.184 17 N -0.543 5.543 18 C 0.051 3.949 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.109 4.109 22 C 0.056 3.944 23 H 0.263 0.737 24 H -0.015 1.015 25 H 0.013 0.987 26 H 0.141 0.859 27 H 0.170 0.830 28 H 0.236 0.764 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -13.484 -0.409 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.011 3.989 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.029 4.029 13 C -0.253 4.253 14 C -0.238 4.238 15 C -0.127 4.127 16 O -0.080 6.080 17 N -0.268 5.268 18 C -0.077 4.077 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.147 4.147 22 C -0.071 4.071 23 H 0.072 0.928 24 H 0.003 0.997 25 H 0.031 0.969 26 H 0.159 0.841 27 H 0.188 0.812 28 H 0.252 0.748 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.338 -13.549 -0.859 14.588 hybrid contribution 0.867 1.571 0.592 1.889 sum 6.206 -11.978 -0.267 13.493 Atomic orbital electron populations 1.70090 1.07649 1.27712 1.51592 1.25853 0.95655 1.02936 0.94834 0.85597 0.78394 0.78578 0.79099 1.19689 1.20759 1.18922 1.21507 0.93504 0.91652 1.50427 0.91993 1.18938 0.93381 0.91110 0.95465 1.20177 0.92852 0.90676 0.89657 0.92960 1.22186 0.94668 0.99929 0.86083 1.21666 0.96200 1.07746 0.99694 1.22027 1.02186 1.05663 0.93895 1.24741 0.85862 1.05073 0.97041 1.84054 1.40704 1.63769 1.19521 1.61933 1.24414 1.01389 1.39062 1.22173 0.96211 0.99740 0.89536 1.21564 0.97649 0.93134 1.02436 1.21562 0.98033 0.97861 0.97660 1.21559 0.98735 0.95445 0.98936 1.22124 0.94098 0.91049 0.99840 0.92820 0.99654 0.96902 0.84079 0.81216 0.74756 0.94992 0.92305 0.92155 0.89957 0.89811 0.91732 0.92067 0.89631 0.92131 0.95285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.53 -30.60 8.62 25.60 0.22 -30.38 16 8 H 0.06 3.43 6.78 -2.91 -0.02 3.41 16 9 C 0.05 2.64 4.40 29.85 0.13 2.77 16 10 C 0.17 7.76 1.98 44.17 0.09 7.85 16 11 H 0.05 2.33 8.13 -2.39 -0.02 2.31 16 12 C 0.02 0.94 3.93 24.83 0.10 1.04 16 13 C -0.23 -9.06 9.95 22.19 0.22 -8.84 16 14 C -0.22 -7.04 10.91 22.19 0.24 -6.80 16 15 C -0.06 -1.91 12.09 66.97 0.81 -1.10 16 16 O -0.18 -7.51 10.05 -2.47 -0.02 -7.53 16 17 N -0.54 -20.86 4.51 -875.53 -3.95 -24.81 16 18 C 0.05 1.78 5.26 86.32 0.45 2.24 16 19 C -0.11 -2.97 6.09 30.65 0.19 -2.78 16 20 C -0.11 -2.50 6.00 30.67 0.18 -2.32 16 21 C -0.11 -2.68 6.09 30.65 0.19 -2.49 16 22 C 0.06 1.78 5.19 86.33 0.45 2.23 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.01 -0.93 8.14 -2.39 -0.02 -0.94 16 25 H 0.01 0.74 6.12 -2.39 -0.01 0.72 16 26 H 0.14 5.26 8.06 -2.91 -0.02 5.23 16 27 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.24 4.92 8.06 -2.91 -0.02 4.90 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 2.40 5.99 -2.38 -0.01 2.39 16 31 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.06 2.04 6.24 -2.39 -0.01 2.03 16 38 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -67.96 303.71 3.09 -64.87 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.02 Total: 15.16 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.73 Total: -37.82 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.67 Total: -81.76 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.02 Total: -7.53 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.96 3.09 -64.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.500 kcal (2) G-P(sol) polarization free energy of solvation -67.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds