Wall clock time and date at job start Mon Mar 30 2020 06:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46961 * 2 1 4 4 C 1.40035 * 111.00517 * 294.32145 * 3 2 1 5 5 C 1.39430 * 129.92310 * 319.87067 * 4 3 2 6 6 C 1.37918 * 120.25038 * 180.30632 * 5 4 3 7 7 C 1.38268 * 120.29439 * 0.02562 * 6 5 4 8 8 C 1.38536 * 119.85256 * 359.75627 * 7 6 5 9 9 F 1.35103 * 119.98484 * 180.02562 * 8 7 6 10 10 C 1.38142 * 120.02732 * 0.29292 * 8 7 6 11 11 C 1.51573 * 131.56913 * 180.21145 * 10 8 7 12 12 C 1.47903 * 111.00293 * 54.33455 * 3 2 1 13 13 H 1.09003 * 110.78008 * 329.26749 * 12 3 2 14 14 C 1.53004 * 110.78226 * 92.51115 * 12 3 2 15 15 C 1.50699 * 109.47195 * 293.51197 * 14 12 3 16 16 H 1.08002 * 120.00117 * 354.67392 * 15 14 12 17 17 C 1.37868 * 119.99820 * 174.67792 * 15 14 12 18 18 N 1.31516 * 120.00435 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46793 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47257 * 119.99556 * 19 17 15 22 22 H 1.48502 * 109.47350 * 240.00075 * 19 17 15 23 23 H 1.08995 * 109.47504 * 173.42541 * 1 2 3 24 24 H 1.09005 * 109.46900 * 293.42338 * 1 2 3 25 25 H 1.08996 * 109.47172 * 53.41893 * 1 2 3 26 26 H 1.09000 * 109.46492 * 240.00811 * 2 1 3 27 27 H 1.08996 * 109.47117 * 120.00445 * 2 1 3 28 28 H 1.07991 * 119.87468 * 0.27848 * 5 4 3 29 29 H 1.07996 * 119.85457 * 180.02562 * 6 5 4 30 30 H 1.07994 * 120.07623 * 179.97438 * 7 6 5 31 31 H 1.09007 * 110.74063 * 281.88376 * 11 10 8 32 32 H 1.08991 * 110.74448 * 45.22034 * 11 10 8 33 33 H 1.08996 * 109.46493 * 53.51223 * 14 12 3 34 34 H 1.08994 * 109.46832 * 173.50797 * 14 12 3 35 35 H 0.96996 * 120.00549 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6793 2.0377 -1.1913 5 6 1.6858 1.5661 -2.5034 6 6 1.3129 2.3943 -3.5412 7 6 0.9302 3.6989 -3.2895 8 6 0.9164 4.1747 -1.9885 9 9 0.5424 5.4488 -1.7394 10 6 1.2902 3.3485 -0.9463 11 6 1.3680 3.5876 0.5484 12 6 1.4373 2.1531 1.1218 13 1 0.4410 1.7849 1.3665 14 6 2.3501 2.0989 2.3485 15 6 2.3991 0.6881 2.8762 16 1 1.7701 -0.0738 2.4400 17 6 3.2468 0.3702 3.9160 18 7 4.0131 1.2978 4.4470 19 14 3.3071 -1.3783 4.5707 20 1 2.3555 -2.2256 3.8077 21 1 4.6821 -1.9175 4.4167 22 1 2.9318 -1.3822 6.0075 23 1 -0.3634 -1.0208 -0.1177 24 1 -0.3633 0.4085 0.9430 25 1 -0.3633 0.6124 -0.8252 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.9843 0.5486 -2.7078 29 1 1.3198 2.0222 -4.5551 30 1 0.6393 4.3445 -4.1049 31 1 2.2664 4.1499 0.8032 32 1 0.4754 4.1023 0.9040 33 1 3.3542 2.4171 2.0685 34 1 1.9608 2.7623 3.1206 35 1 4.6092 1.0742 5.1787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260063313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:32 Heat of formation + Delta-G solvation = -11.589385 kcal Electronic energy + Delta-G solvation = -18371.136795 eV Core-core repulsion = 15476.463927 eV Total energy + Delta-G solvation = -2894.672868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.63301 -40.53004 -36.77980 -33.31184 -32.87740 -30.40743 -29.78671 -27.92460 -26.76742 -23.52961 -23.03299 -21.39252 -20.96257 -19.54214 -16.87965 -16.50474 -16.43996 -15.54532 -15.47702 -15.03767 -14.80860 -14.46107 -13.69139 -13.38707 -12.96996 -12.68527 -12.62768 -12.25699 -11.93406 -11.69275 -11.51482 -11.29455 -11.13333 -11.01946 -10.86320 -10.63689 -10.53651 -10.18917 -9.78393 -9.16952 -8.96799 -8.42478 -8.39918 -7.29108 -6.03334 -4.04887 1.41203 1.49520 3.27962 3.36084 3.37260 3.74813 4.20541 4.41426 4.53902 4.82869 5.03268 5.17724 5.31353 5.34251 5.49328 5.53658 5.60492 5.67427 5.75574 5.78819 6.08486 6.14480 6.20716 6.25857 6.34949 6.49860 6.53590 6.56738 6.63078 6.75534 7.00537 7.29983 7.57624 7.69523 7.85539 7.94796 8.34240 8.98514 9.57727 11.08196 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.006415 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.530382 B = 4363.635145 C = 4883.059160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.038 3.962 3 N -0.450 5.450 4 C 0.148 3.852 5 C -0.163 4.163 6 C -0.068 4.068 7 C -0.200 4.200 8 C 0.135 3.865 9 F -0.145 7.145 10 C -0.188 4.188 11 C -0.079 4.079 12 C 0.082 3.918 13 H 0.069 0.931 14 C 0.035 3.965 15 C -0.515 4.515 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.024 0.976 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 0.973 -12.963 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.088 4.088 3 N -0.161 5.161 4 C 0.046 3.954 5 C -0.185 4.185 6 C -0.086 4.086 7 C -0.220 4.220 8 C 0.115 3.885 9 F -0.123 7.123 10 C -0.192 4.192 11 C -0.116 4.116 12 C -0.023 4.023 13 H 0.087 0.913 14 C -0.003 4.003 15 C -0.553 4.553 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.075 0.939 -12.627 14.044 hybrid contribution -0.528 -0.671 0.323 0.912 sum -6.602 0.269 -12.304 13.966 Atomic orbital electron populations 1.22447 0.97840 1.01956 1.02284 1.22552 0.92985 0.88709 1.04511 1.60384 1.52199 1.03537 0.99931 1.19792 0.90634 0.92900 0.92084 1.20477 1.06935 1.00786 0.90287 1.20598 0.97011 0.92445 0.98592 1.20807 1.09035 0.97668 0.94477 1.17052 0.99855 0.78605 0.92959 1.91451 1.89058 1.36615 1.95191 1.20640 1.06531 0.95577 0.96434 1.21434 1.02695 0.98915 0.88580 1.23210 0.98774 0.88379 0.91949 0.91328 1.19129 0.94564 0.97558 0.89016 1.21243 1.22753 0.94946 1.16401 0.92030 1.24976 0.95584 0.96918 0.96753 1.69961 1.25202 1.32745 1.25303 0.86610 0.77857 0.85114 0.78839 1.19779 1.21042 1.21093 0.92166 0.91495 0.93063 0.91419 0.86876 0.85842 0.85346 0.85299 0.89409 0.90790 0.94941 0.95818 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 9.21 37.16 0.34 -2.48 16 2 C 0.04 0.65 5.54 -3.82 -0.02 0.63 16 3 N -0.45 -8.68 4.89 -161.56 -0.79 -9.47 16 4 C 0.15 2.55 4.76 -83.41 -0.40 2.16 16 5 C -0.16 -2.35 9.36 -39.25 -0.37 -2.72 16 6 C -0.07 -0.84 10.02 -39.69 -0.40 -1.24 16 7 C -0.20 -2.67 10.04 -39.46 -0.40 -3.06 16 8 C 0.14 2.16 7.29 -39.51 -0.29 1.87 16 9 F -0.14 -2.33 17.27 2.25 0.04 -2.29 16 10 C -0.19 -3.28 6.21 -103.98 -0.65 -3.93 16 11 C -0.08 -1.44 6.58 -26.59 -0.17 -1.62 16 12 C 0.08 1.65 2.48 -66.29 -0.16 1.49 16 13 H 0.07 1.35 5.37 -51.93 -0.28 1.07 16 14 C 0.03 0.85 4.66 -27.88 -0.13 0.72 16 15 C -0.52 -13.55 8.25 -34.44 -0.28 -13.84 16 16 H 0.06 1.54 5.22 -52.49 -0.27 1.26 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 25 H 0.05 0.76 7.08 -51.93 -0.37 0.39 16 26 H 0.07 1.02 7.05 -51.93 -0.37 0.66 16 27 H 0.11 2.22 5.18 -51.93 -0.27 1.95 16 28 H 0.12 1.57 7.25 -52.49 -0.38 1.19 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.09 1.66 7.92 -51.93 -0.41 1.25 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 284.38 15.07 4.29 4.29 Total: -1.00 -28.82 284.38 -8.11 -36.94 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.34 Total: 0.53 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -3.02 Total: -20.50 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.05 Total: -34.84 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.82 -8.11 -36.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.346 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds