Wall clock time and date at job start Mon Mar 30 2020 06:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46961 * 2 1 4 4 C 1.40035 * 111.00517 * 294.32145 * 3 2 1 5 5 C 1.39430 * 129.92310 * 319.87067 * 4 3 2 6 6 C 1.37918 * 120.25038 * 180.30632 * 5 4 3 7 7 C 1.38268 * 120.29439 * 0.02562 * 6 5 4 8 8 C 1.38536 * 119.85256 * 359.75627 * 7 6 5 9 9 F 1.35103 * 119.98484 * 180.02562 * 8 7 6 10 10 C 1.38142 * 120.02732 * 0.29292 * 8 7 6 11 11 C 1.51573 * 131.56913 * 180.21145 * 10 8 7 12 12 C 1.47903 * 111.00293 * 54.33455 * 3 2 1 13 13 H 1.09003 * 110.78008 * 329.26749 * 12 3 2 14 14 C 1.53004 * 110.78226 * 92.51115 * 12 3 2 15 15 C 1.50699 * 109.47195 * 293.51197 * 14 12 3 16 16 H 1.08002 * 120.00117 * 354.67392 * 15 14 12 17 17 C 1.37868 * 119.99820 * 174.67792 * 15 14 12 18 18 N 1.31516 * 120.00435 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46793 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47257 * 119.99556 * 19 17 15 22 22 H 1.48502 * 109.47350 * 240.00075 * 19 17 15 23 23 H 1.08995 * 109.47504 * 173.42541 * 1 2 3 24 24 H 1.09005 * 109.46900 * 293.42338 * 1 2 3 25 25 H 1.08996 * 109.47172 * 53.41893 * 1 2 3 26 26 H 1.09000 * 109.46492 * 240.00811 * 2 1 3 27 27 H 1.08996 * 109.47117 * 120.00445 * 2 1 3 28 28 H 1.07991 * 119.87468 * 0.27848 * 5 4 3 29 29 H 1.07996 * 119.85457 * 180.02562 * 6 5 4 30 30 H 1.07994 * 120.07623 * 179.97438 * 7 6 5 31 31 H 1.09007 * 110.74063 * 281.88376 * 11 10 8 32 32 H 1.08991 * 110.74448 * 45.22034 * 11 10 8 33 33 H 1.08996 * 109.46493 * 53.51223 * 14 12 3 34 34 H 1.08994 * 109.46832 * 173.50797 * 14 12 3 35 35 H 0.96996 * 120.00549 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6793 2.0377 -1.1913 5 6 1.6858 1.5661 -2.5034 6 6 1.3129 2.3943 -3.5412 7 6 0.9302 3.6989 -3.2895 8 6 0.9164 4.1747 -1.9885 9 9 0.5424 5.4488 -1.7394 10 6 1.2902 3.3485 -0.9463 11 6 1.3680 3.5876 0.5484 12 6 1.4373 2.1531 1.1218 13 1 0.4410 1.7849 1.3665 14 6 2.3501 2.0989 2.3485 15 6 2.3991 0.6881 2.8762 16 1 1.7701 -0.0738 2.4400 17 6 3.2468 0.3702 3.9160 18 7 4.0131 1.2978 4.4470 19 14 3.3071 -1.3783 4.5707 20 1 2.3555 -2.2256 3.8077 21 1 4.6821 -1.9175 4.4167 22 1 2.9318 -1.3822 6.0075 23 1 -0.3634 -1.0208 -0.1177 24 1 -0.3633 0.4085 0.9430 25 1 -0.3633 0.6124 -0.8252 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.9843 0.5486 -2.7078 29 1 1.3198 2.0222 -4.5551 30 1 0.6393 4.3445 -4.1049 31 1 2.2664 4.1499 0.8032 32 1 0.4754 4.1023 0.9040 33 1 3.3542 2.4171 2.0685 34 1 1.9608 2.7623 3.1206 35 1 4.6092 1.0742 5.1787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260063313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:31 Heat of formation + Delta-G solvation = -27.829916 kcal Electronic energy + Delta-G solvation = -18371.841037 eV Core-core repulsion = 15476.463927 eV Total energy + Delta-G solvation = -2895.377110 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.85002 -41.86009 -38.03655 -35.14314 -34.39965 -31.98965 -31.08346 -29.19610 -28.43974 -25.28022 -24.35618 -22.64584 -22.41409 -20.99842 -18.51424 -18.11626 -17.78449 -16.91369 -16.59586 -16.48231 -16.23894 -16.08122 -15.02257 -14.76765 -14.34326 -14.13936 -13.97920 -13.78940 -13.49112 -13.31040 -13.04691 -12.75185 -12.53602 -12.51734 -12.32948 -12.25391 -12.13491 -11.74410 -11.38501 -10.96419 -10.61428 -10.53428 -9.60258 -8.60606 -8.14778 -6.22685 0.25213 0.34508 1.41338 1.42195 1.53566 2.42955 2.58255 2.90066 3.20788 3.35401 3.53866 3.74796 4.02518 4.04876 4.24239 4.34424 4.36380 4.42554 4.48370 4.56069 4.72647 4.82535 4.91091 4.99468 5.06170 5.12390 5.21573 5.29626 5.31365 5.41790 5.47514 5.60079 5.85258 5.87553 6.16618 6.25651 6.40382 6.90436 7.44235 8.98061 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.006415 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.530382 B = 4363.635145 C = 4883.059160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.037 3.963 3 N -0.474 5.474 4 C 0.127 3.873 5 C -0.160 4.160 6 C -0.052 4.052 7 C -0.187 4.187 8 C 0.119 3.881 9 F -0.151 7.151 10 C -0.211 4.211 11 C -0.077 4.077 12 C 0.091 3.909 13 H 0.073 0.927 14 C 0.042 3.958 15 C -0.518 4.518 16 H 0.076 0.924 17 C -0.001 4.001 18 N -0.938 5.938 19 Si 0.958 3.042 20 H -0.255 1.255 21 H -0.285 1.285 22 H -0.283 1.283 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.144 0.856 29 H 0.174 0.826 30 H 0.160 0.840 31 H 0.068 0.932 32 H 0.082 0.918 33 H -0.006 1.006 34 H -0.001 1.001 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 -0.611 -15.934 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.088 4.088 3 N -0.185 5.185 4 C 0.026 3.974 5 C -0.181 4.181 6 C -0.070 4.070 7 C -0.207 4.207 8 C 0.099 3.901 9 F -0.129 7.129 10 C -0.215 4.215 11 C -0.115 4.115 12 C -0.015 4.015 13 H 0.091 0.909 14 C 0.005 3.995 15 C -0.556 4.556 16 H 0.094 0.906 17 C -0.198 4.198 18 N -0.579 5.579 19 Si 0.783 3.217 20 H -0.179 1.179 21 H -0.211 1.211 22 H -0.209 1.209 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.162 0.838 29 H 0.192 0.808 30 H 0.178 0.822 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.012 0.988 34 H 0.018 0.982 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.295 -0.646 -15.625 17.257 hybrid contribution -0.161 -0.114 1.128 1.145 sum -7.456 -0.760 -14.497 16.320 Atomic orbital electron populations 1.22334 0.96202 1.03402 1.01532 1.22542 0.94384 0.87738 1.04170 1.60302 1.53454 1.04356 1.00436 1.19910 0.92344 0.92661 0.92452 1.20834 1.05956 1.02117 0.89204 1.21112 0.94392 0.91452 1.00082 1.21246 1.07081 0.98508 0.93851 1.17345 1.00580 0.78381 0.93804 1.91434 1.89189 1.36965 1.95353 1.20620 1.08600 0.96525 0.95776 1.21284 1.02218 0.97641 0.90316 1.22828 0.97513 0.90144 0.91010 0.90893 1.18927 0.93412 0.96538 0.90656 1.21682 1.22235 0.95800 1.15896 0.90578 1.25904 0.95408 1.01225 0.97294 1.70116 1.26421 1.35157 1.26174 0.85506 0.77996 0.80076 0.78139 1.17864 1.21079 1.20930 0.89788 0.93245 0.92456 0.89006 0.89764 0.83841 0.80815 0.82217 0.91335 0.89917 0.98762 0.98242 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.01 9.21 71.98 0.66 -4.35 16 2 C 0.04 1.23 5.54 86.31 0.48 1.71 16 3 N -0.47 -18.32 4.89 -665.04 -3.25 -21.58 16 4 C 0.13 4.22 4.76 38.28 0.18 4.41 16 5 C -0.16 -4.02 9.36 22.48 0.21 -3.81 16 6 C -0.05 -1.03 10.02 22.20 0.22 -0.81 16 7 C -0.19 -4.23 10.04 22.35 0.22 -4.01 16 8 C 0.12 3.58 7.29 22.32 0.16 3.74 16 9 F -0.15 -4.71 17.27 44.97 0.78 -3.93 16 10 C -0.21 -7.31 6.21 -19.45 -0.12 -7.43 16 11 C -0.08 -2.95 6.58 30.69 0.20 -2.75 16 12 C 0.09 3.80 2.48 45.28 0.11 3.92 16 13 H 0.07 2.96 5.37 -2.39 -0.01 2.94 16 14 C 0.04 2.21 4.66 29.85 0.14 2.34 16 15 C -0.52 -28.08 8.25 25.60 0.21 -27.87 16 16 H 0.08 3.83 5.22 -2.91 -0.02 3.82 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 18 N -0.94 -57.07 13.29 21.44 0.28 -56.78 16 19 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 1.56 6.17 -2.38 -0.01 1.55 16 25 H 0.06 1.55 7.08 -2.39 -0.02 1.54 16 26 H 0.09 2.55 7.05 -2.39 -0.02 2.53 16 27 H 0.08 3.27 5.18 -2.39 -0.01 3.26 16 28 H 0.14 3.00 7.25 -2.92 -0.02 2.98 16 29 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.07 2.80 7.92 -2.38 -0.02 2.79 16 32 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 33 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -65.08 284.38 4.08 -61.00 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.10 Total: 10.33 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 3.15 Total: -34.51 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -2.97 Total: -78.36 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.93 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.08 4.08 -61.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.171 kcal (2) G-P(sol) polarization free energy of solvation -65.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds